RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 CCL21O00585 134 aa12.35□□□□□ -0.43
LDLR-204ENST00000545707 UBE2V1Q13404 147 aa12.35□□□□□ -0.43
LDLR-204ENST00000545707 ARPC1AQ92747 370 aa12.35□□□□□ -0.43
LDLR-204ENST00000545707 C21orf62Q9NYP8 219 aa12.35□□□□□ -0.43
LDLR-204ENST00000545707 SMKR1H3BMG3 65 aa12.35□□□□□ -0.43
LDLR-204ENST00000545707 K7ENP7 123 aa12.35□□□□□ -0.43
LDLR-204ENST00000545707 OR8A1Q8NGG7 326 aa12.35□□□□□ -0.43
LDLR-204ENST00000545707 A0A096LNJ9 63 aa12.34□□□□□ -0.43
LDLR-204ENST00000545707 NPIPB5A8MRT5 1133 aa12.34□□□□□ -0.43
LDLR-204ENST00000545707 ZNF80P51504 273 aaPredicted RBP12.34□□□□□ -0.43
LDLR-204ENST00000545707 LINC01545Q5VT33 79 aa12.34□□□□□ -0.43
LDLR-204ENST00000545707 VGLL1Q99990 258 aa12.34□□□□□ -0.43
LDLR-204ENST00000545707 RAB1BQ9H0U4 201 aa12.34□□□□□ -0.43
LDLR-204ENST00000545707 CEACAM3P40198 252 aa12.33□□□□□ -0.43
LDLR-204ENST00000545707 RELQ04864 619 aaPredicted RBP12.33□□□□□ -0.43
LDLR-204ENST00000545707 BVES-AS1Q5T3Y7 98 aa12.33□□□□□ -0.43
LDLR-204ENST00000545707 SIGLEC8Q9NYZ4 499 aa12.33□□□□□ -0.43
LDLR-204ENST00000545707 ODF3BA8MYP8 253 aa12.33□□□□□ -0.44
LDLR-204ENST00000545707 EGR2P11161 476 aaPredicted RBP12.33□□□□□ -0.44
LDLR-204ENST00000545707 CSN1S1P47710 185 aa12.33□□□□□ -0.44
LDLR-204ENST00000545707 ZNF562Q6V9R5 426 aa12.33□□□□□ -0.44
LDLR-204ENST00000545707 RNASE8Q8TDE3 154 aaKnown RBP12.33□□□□□ -0.44
LDLR-204ENST00000545707 SMAD5-AS1Q9Y6J3 95 aa12.33□□□□□ -0.44
LDLR-204ENST00000545707 AKAP6Q13023 2319 aa12.33□□□□□ -0.44
LDLR-204ENST00000545707 COL6A6A6NMZ7 2263 aa12.33□□□□□ -0.44
LDLR-204ENST00000545707 PRTN3P24158 256 aa12.32□□□□□ -0.44
LDLR-204ENST00000545707 OR10AG1Q8NH19 301 aa12.32□□□□□ -0.44
LDLR-204ENST00000545707 SPTBN1Q01082 2364 aaKnown RBP12.32□□□□□ -0.44
LDLR-204ENST00000545707 TRAV30A0A087WSZ9 112 aa12.32□□□□□ -0.44
LDLR-204ENST00000545707 CBY3A6NI87 242 aa12.32□□□□□ -0.44
LDLR-204ENST00000545707 TAX1BP3O14907 124 aa12.32□□□□□ -0.44
LDLR-204ENST00000545707 CTSGP08311 255 aa12.32□□□□□ -0.44
LDLR-204ENST00000545707 VAMP3Q15836 100 aa12.32□□□□□ -0.44
LDLR-204ENST00000545707 VMO1Q7Z5L0 202 aa12.32□□□□□ -0.44
LDLR-204ENST00000545707 TIMD4Q96H15 378 aa12.32□□□□□ -0.44
LDLR-204ENST00000545707 PRELID3AQ96N28 172 aa12.32□□□□□ -0.44
LDLR-204ENST00000545707 FAM104BQ5XKR9 115 aa12.31□□□□□ -0.44
LDLR-204ENST00000545707 PIP4P2Q8N4L2 257 aa12.31□□□□□ -0.44
LDLR-204ENST00000545707 GATD1Q8NB37 220 aa12.31□□□□□ -0.44
LDLR-204ENST00000545707 PRR25Q96S07 402 aa12.31□□□□□ -0.44
LDLR-204ENST00000545707 NDUFS7O75251 213 aa12.31□□□□□ -0.44
LDLR-204ENST00000545707 IGHG4P01861 327 aa12.31□□□□□ -0.44
LDLR-204ENST00000545707 ZFP36P26651 326 aaKnown RBP12.31□□□□□ -0.44
LDLR-204ENST00000545707 PDE6HQ13956 83 aa12.31□□□□□ -0.44
LDLR-204ENST00000545707 C21orf62-AS1Q17RA5 79 aa12.31□□□□□ -0.44
LDLR-204ENST00000545707 MRPL51Q4U2R6 128 aaKnown RBP12.31□□□□□ -0.44
LDLR-204ENST00000545707 ZNF493Q6ZR52 646 aa12.31□□□□□ -0.44
LDLR-204ENST00000545707 WFDC3Q8IUB2 231 aa12.31□□□□□ -0.44
LDLR-204ENST00000545707 MSRB1Q9NZV6 116 aa12.31□□□□□ -0.44
LDLR-204ENST00000545707 SFTPCP11686 197 aa12.3□□□□□ -0.44
LDLR-204ENST00000545707 TTC9CQ8N5M4 171 aa12.3□□□□□ -0.44
LDLR-204ENST00000545707 CELSR1Q9NYQ6 3014 aa12.3□□□□□ -0.44
LDLR-204ENST00000545707 IGHV3-66A0A0C4DH42 116 aa12.3□□□□□ -0.44
LDLR-204ENST00000545707 A0A1B0GW15 77 aa12.3□□□□□ -0.44
LDLR-204ENST00000545707 NBL1P41271 181 aa12.3□□□□□ -0.44
LDLR-204ENST00000545707 TWIST1Q15672 202 aa12.3□□□□□ -0.44
LDLR-204ENST00000545707 Q6AWC8 147 aa12.3□□□□□ -0.44
LDLR-204ENST00000545707 ZNF575Q86XF7 245 aa12.3□□□□□ -0.44
LDLR-204ENST00000545707 IGHV3OR16-13A0A075B7E8 117 aa12.29□□□□□ -0.44
LDLR-204ENST00000545707 IGHV3-74A0A0B4J1X5 117 aa12.29□□□□□ -0.44
LDLR-204ENST00000545707 GAS8-AS1O95177 125 aa12.29□□□□□ -0.44
LDLR-204ENST00000545707 ERCC8Q13216 396 aa12.29□□□□□ -0.44
LDLR-204ENST00000545707 VPS13CQ709C8 3753 aa12.29□□□□□ -0.44
LDLR-204ENST00000545707 M0R1W7 72 aa12.29□□□□□ -0.44
LDLR-204ENST00000545707 ADORA2A-AS1P86434 159 aa12.29□□□□□ -0.44
LDLR-204ENST00000545707 PSG9Q00887 426 aa12.29□□□□□ -0.44
LDLR-204ENST00000545707 ANKRD39Q53RE8 183 aa12.29□□□□□ -0.44
LDLR-204ENST00000545707 ORMDL3Q8N138 153 aa12.29□□□□□ -0.44
LDLR-204ENST00000545707 OR4C5Q8NGB2 326 aa12.29□□□□□ -0.44
LDLR-204ENST00000545707 IGHV7-81A0A0B4J1V7 117 aa12.28□□□□□ -0.44
LDLR-204ENST00000545707 IGHV2-70DA0A0C4DH43 119 aa12.28□□□□□ -0.44
LDLR-204ENST00000545707 PRAC2D3DTV9 90 aa12.28□□□□□ -0.44
LDLR-204ENST00000545707 NPYP01303 97 aa12.28□□□□□ -0.44
LDLR-204ENST00000545707 TMEM11P17152 192 aa12.28□□□□□ -0.44
LDLR-204ENST00000545707 RPL7P18124 248 aaKnown RBP12.28□□□□□ -0.44
LDLR-204ENST00000545707 PPIFP30405 207 aaKnown RBP12.28□□□□□ -0.44
LDLR-204ENST00000545707 RHOGP84095 191 aa12.28□□□□□ -0.44
LDLR-204ENST00000545707 C2orf91Q6ZV80 131 aa12.28□□□□□ -0.44
LDLR-204ENST00000545707 MS4A6AQ9H2W1 248 aa12.28□□□□□ -0.44
LDLR-204ENST00000545707 RABAC1Q9UI14 185 aa12.28□□□□□ -0.44
LDLR-204ENST00000545707 ORM1P02763 201 aa12.28□□□□□ -0.44
LDLR-204ENST00000545707 GPR183P32249 361 aa12.28□□□□□ -0.44
LDLR-204ENST00000545707 RNF182Q8N6D2 247 aa12.28□□□□□ -0.44
LDLR-204ENST00000545707 PPP1R14DQ9NXH3 145 aa12.28□□□□□ -0.44
LDLR-204ENST00000545707 CKS2P33552 79 aa12.27□□□□□ -0.44
LDLR-204ENST00000545707 CACNG7P62955 275 aa12.27□□□□□ -0.44
LDLR-204ENST00000545707 FBXL19-AS1Q494R0 122 aa12.27□□□□□ -0.44
LDLR-204ENST00000545707 DEFB125Q8N687 156 aa12.27□□□□□ -0.44
LDLR-204ENST00000545707 U3KQK5 164 aa12.27□□□□□ -0.44
LDLR-204ENST00000545707 COX8AP10176 69 aa12.27□□□□□ -0.45
LDLR-204ENST00000545707 NHLH1Q02575 133 aa12.27□□□□□ -0.45
LDLR-204ENST00000545707 ECSCRQ19T08 205 aa12.27□□□□□ -0.45
LDLR-204ENST00000545707 SAPCD1Q5SSQ6 148 aa12.27□□□□□ -0.45
LDLR-204ENST00000545707 C12orf54Q6X4T0 127 aa12.27□□□□□ -0.45
LDLR-204ENST00000545707 S100A7AQ86SG5 101 aa12.27□□□□□ -0.45
LDLR-204ENST00000545707 Q8N6K4 173 aa12.27□□□□□ -0.45
LDLR-204ENST00000545707 FER1L6-AS1Q8NA97 138 aa12.27□□□□□ -0.45
LDLR-204ENST00000545707 THYN1Q9P016 225 aa12.27□□□□□ -0.45
LDLR-204ENST00000545707 CBY1Q9Y3M2 126 aa12.27□□□□□ -0.45
LDLR-204ENST00000545707 MAP1AP78559 2803 aaPredicted RBP12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms