RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 FAM74A4Q5TZK3 123 aa11.48□□□□□ -0.57
LIMS1-215ENST00000544547 Q86TA4 180 aa11.48□□□□□ -0.57
LIMS1-215ENST00000544547 TMEM158Q8WZ71 300 aa11.48□□□□□ -0.57
LIMS1-215ENST00000544547 ZNF815PA8K554 130 aa11.48□□□□□ -0.57
LIMS1-215ENST00000544547 DLX6P56179 175 aa11.48□□□□□ -0.57
LIMS1-215ENST00000544547 TM4SF5O14894 197 aa11.48□□□□□ -0.57
LIMS1-215ENST00000544547 RRN3P1Q2M238 152 aa11.48□□□□□ -0.57
LIMS1-215ENST00000544547 ZFAND6Q6FIF0 208 aa11.48□□□□□ -0.57
LIMS1-215ENST00000544547 SIGLEC8Q9NYZ4 499 aa11.48□□□□□ -0.57
LIMS1-215ENST00000544547 TRGV3P03979 118 aa11.47□□□□□ -0.57
LIMS1-215ENST00000544547 SLC25A39Q9BZJ4 359 aaPredicted RBP11.47□□□□□ -0.57
LIMS1-215ENST00000544547 FAM90A1Q86YD7 464 aa11.47□□□□□ -0.57
LIMS1-215ENST00000544547 GAGE2BQ13066 116 aa11.47□□□□□ -0.57
LIMS1-215ENST00000544547 GAGE2EQ4V326 116 aa11.47□□□□□ -0.57
LIMS1-215ENST00000544547 GDF5OSQ5U4N7 250 aa11.47□□□□□ -0.57
LIMS1-215ENST00000544547 EEF1AKMT3Q96AZ1 226 aa11.47□□□□□ -0.57
LIMS1-215ENST00000544547 GAGE2DQ9UEU5 116 aa11.47□□□□□ -0.57
LIMS1-215ENST00000544547 ZNF256Q9Y2P7 627 aaPredicted RBP11.47□□□□□ -0.57
LIMS1-215ENST00000544547 A8MWV9 139 aa11.47□□□□□ -0.57
LIMS1-215ENST00000544547 WIPF2Q8TF74 440 aaPredicted RBP11.47□□□□□ -0.57
LIMS1-215ENST00000544547 NXT2Q9NPJ8 142 aaKnown RBP11.47□□□□□ -0.57
LIMS1-215ENST00000544547 TRAV26-1A0A087WT03 109 aa11.46□□□□□ -0.57
LIMS1-215ENST00000544547 C19orf54Q5BKX5 351 aa11.46□□□□□ -0.57
LIMS1-215ENST00000544547 DUX4L9Q6RFH8 374 aaPredicted RBP11.46□□□□□ -0.57
LIMS1-215ENST00000544547 TMEM133Q9H2Q1 129 aa11.46□□□□□ -0.57
LIMS1-215ENST00000544547 SRRM4A7MD48 611 aaKnown RBP11.46□□□□□ -0.58
LIMS1-215ENST00000544547 LGALS3P17931 250 aaKnown RBP11.46□□□□□ -0.58
LIMS1-215ENST00000544547 RNF125Q96EQ8 232 aa11.46□□□□□ -0.58
LIMS1-215ENST00000544547 MRAP2Q96G30 205 aa11.46□□□□□ -0.58
LIMS1-215ENST00000544547 C21orf62Q9NYP8 219 aa11.46□□□□□ -0.58
LIMS1-215ENST00000544547 TMEM8BA6NDV4 472 aa11.45□□□□□ -0.58
LIMS1-215ENST00000544547 LINC00312Q9Y6C7 94 aa11.45□□□□□ -0.58
LIMS1-215ENST00000544547 IGKV1OR2-108A0A075B7D4 117 aa11.45□□□□□ -0.58
LIMS1-215ENST00000544547 FXYD5Q96DB9 178 aa11.45□□□□□ -0.58
LIMS1-215ENST00000544547 FAM159AQ6UWV7 190 aa11.45□□□□□ -0.58
LIMS1-215ENST00000544547 RAX2Q96IS3 184 aa11.45□□□□□ -0.58
LIMS1-215ENST00000544547 TANC2Q9HCD6 1990 aa11.44□□□□□ -0.58
LIMS1-215ENST00000544547 IGHV4-39P01824 125 aa11.44□□□□□ -0.58
LIMS1-215ENST00000544547 FXYD2P54710 66 aa11.44□□□□□ -0.58
LIMS1-215ENST00000544547 DLX4Q92988 240 aaPredicted RBP11.44□□□□□ -0.58
LIMS1-215ENST00000544547 SS18L2Q9UHA2 77 aa11.44□□□□□ -0.58
LIMS1-215ENST00000544547 TRIOO75962 3097 aa11.44□□□□□ -0.58
LIMS1-215ENST00000544547 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.44□□□□□ -0.58
LIMS1-215ENST00000544547 FABP5P3A8MUU1 101 aa11.44□□□□□ -0.58
LIMS1-215ENST00000544547 C15orf65H3BRN8 121 aa11.44□□□□□ -0.58
LIMS1-215ENST00000544547 PSMG4Q5JS54 123 aa11.44□□□□□ -0.58
LIMS1-215ENST00000544547 TMEM131Q92545 1883 aa11.44□□□□□ -0.58
LIMS1-215ENST00000544547 F8W1H4 67 aa11.44□□□□□ -0.58
LIMS1-215ENST00000544547 LGALS9BQ3B8N2 356 aa11.44□□□□□ -0.58
LIMS1-215ENST00000544547 FAM120AOSQ5T036 256 aa11.44□□□□□ -0.58
LIMS1-215ENST00000544547 LGALS9CQ6DKI2 356 aa11.44□□□□□ -0.58
LIMS1-215ENST00000544547 Q8N976 141 aa11.44□□□□□ -0.58
LIMS1-215ENST00000544547 GTSF1Q8WW33 167 aa11.44□□□□□ -0.58
LIMS1-215ENST00000544547 IGF2BP2-AS1Q96M15 143 aa11.44□□□□□ -0.58
LIMS1-215ENST00000544547 LYNX1G3V0Z9 82 aa11.43□□□□□ -0.58
LIMS1-215ENST00000544547 SH2D1AO60880 128 aa11.43□□□□□ -0.58
LIMS1-215ENST00000544547 LYNX1P0DP58 116 aa11.43□□□□□ -0.58
LIMS1-215ENST00000544547 BRWD1-AS2P59051 145 aa11.43□□□□□ -0.58
LIMS1-215ENST00000544547 LINC01545Q5VT33 79 aa11.43□□□□□ -0.58
LIMS1-215ENST00000544547 NEU4Q8WWR8 484 aaPredicted RBP11.43□□□□□ -0.58
LIMS1-215ENST00000544547 CCL19Q99731 98 aa11.43□□□□□ -0.58
LIMS1-215ENST00000544547 GFRA4Q9GZZ7 299 aa11.43□□□□□ -0.58
LIMS1-215ENST00000544547 FNDC10F2Z333 226 aa11.43□□□□□ -0.58
LIMS1-215ENST00000544547 Q8TCH9 128 aa11.43□□□□□ -0.58
LIMS1-215ENST00000544547 CHTOPQ9Y3Y2 248 aaKnown RBP11.43□□□□□ -0.58
LIMS1-215ENST00000544547 IGHV1-18A0A0C4DH31 117 aa11.43□□□□□ -0.58
LIMS1-215ENST00000544547 SNRPD3P62318 126 aaKnown RBP11.43□□□□□ -0.58
LIMS1-215ENST00000544547 WT1-ASQ06250 92 aa11.43□□□□□ -0.58
LIMS1-215ENST00000544547 SRSF6Q13247 344 aaKnown RBP11.43□□□□□ -0.58
LIMS1-215ENST00000544547 C8orf49Q96NF6 230 aa11.43□□□□□ -0.58
LIMS1-215ENST00000544547 DOPEY1Q5JWR5 2465 aa11.43□□□□□ -0.58
LIMS1-215ENST00000544547 ZNF56Q15929 161 aa11.43□□□□□ -0.58
LIMS1-215ENST00000544547 FAM104BQ5XKR9 115 aa11.43□□□□□ -0.58
LIMS1-215ENST00000544547 PPP1R27Q86WC6 154 aa11.43□□□□□ -0.58
LIMS1-215ENST00000544547 PTPRSQ13332 1948 aa11.42□□□□□ -0.58
LIMS1-215ENST00000544547 NPYP01303 97 aa11.42□□□□□ -0.58
LIMS1-215ENST00000544547 ZNF48Q96MX3 618 aaPredicted RBP11.42□□□□□ -0.58
LIMS1-215ENST00000544547 CLUHP3Q96NS8 147 aa11.42□□□□□ -0.58
LIMS1-215ENST00000544547 A0A1W2PPI3 338 aa11.42□□□□□ -0.58
LIMS1-215ENST00000544547 COX6CP09669 75 aa11.42□□□□□ -0.58
LIMS1-215ENST00000544547 MRPL51Q4U2R6 128 aaKnown RBP11.42□□□□□ -0.58
LIMS1-215ENST00000544547 KIR2DL4Q99706 377 aa11.42□□□□□ -0.58
LIMS1-215ENST00000544547 C7orf69Q9H7B7 122 aa11.42□□□□□ -0.58
LIMS1-215ENST00000544547 CT83Q5H943 113 aa11.42□□□□□ -0.58
LIMS1-215ENST00000544547 ZNF492Q9P255 531 aa11.42□□□□□ -0.58
LIMS1-215ENST00000544547 NUP210LQ5VU65 1888 aa11.42□□□□□ -0.58
LIMS1-215ENST00000544547 B5MCH6 92 aa11.41□□□□□ -0.58
LIMS1-215ENST00000544547 DUX5Q96PT3 197 aa11.41□□□□□ -0.58
LIMS1-215ENST00000544547 NDUFS7O75251 213 aa11.41□□□□□ -0.58
LIMS1-215ENST00000544547 IGLV2-8P01709 118 aa11.41□□□□□ -0.58
LIMS1-215ENST00000544547 CRYBA4P53673 196 aa11.41□□□□□ -0.58
LIMS1-215ENST00000544547 IGKV3OR2-268A0A0C4DH90 116 aa11.41□□□□□ -0.58
LIMS1-215ENST00000544547 LINC01549A6NIU2 74 aa11.41□□□□□ -0.58
LIMS1-215ENST00000544547 CD59P13987 128 aa11.41□□□□□ -0.58
LIMS1-215ENST00000544547 ZNF503Q96F45 646 aa11.41□□□□□ -0.58
LIMS1-215ENST00000544547 IGHV3-11P01762 117 aa11.41□□□□□ -0.58
LIMS1-215ENST00000544547 TMEM167AQ8TBQ9 72 aa11.41□□□□□ -0.58
LIMS1-215ENST00000544547 NAV3Q8IVL0 2385 aa11.4□□□□□ -0.58
LIMS1-215ENST00000544547 TSPAN13O95857 204 aa11.4□□□□□ -0.58
LIMS1-215ENST00000544547 SRSF1Q07955 248 aaKnown RBP eCLIP11.4□□□□□ -0.582e-9■■■■□ 21.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms