RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 RPP21Q9H633 154 aaKnown RBP11.17□□□□□ -0.62
CLIP1-216ENST00000541410 TRAV9-1A0A075B6T8 112 aa11.17□□□□□ -0.62
CLIP1-216ENST00000541410 C19orf71A6NCJ1 209 aa11.17□□□□□ -0.62
CLIP1-216ENST00000541410 F2Z2F3 143 aa11.17□□□□□ -0.62
CLIP1-216ENST00000541410 K7EQM0 130 aa11.17□□□□□ -0.62
CLIP1-216ENST00000541410 CHEK1O14757 476 aa11.17□□□□□ -0.62
CLIP1-216ENST00000541410 RELQ04864 619 aaPredicted RBP11.17□□□□□ -0.62
CLIP1-216ENST00000541410 TMEM136Q6ZRR5 245 aa11.17□□□□□ -0.62
CLIP1-216ENST00000541410 GBGT1Q8N5D6 347 aa11.17□□□□□ -0.62
CLIP1-216ENST00000541410 TMEM75Q8N9X5 138 aa11.17□□□□□ -0.62
CLIP1-216ENST00000541410 OR4X2Q8NGF9 303 aa11.17□□□□□ -0.62
CLIP1-216ENST00000541410 TSKUQ8WUA8 353 aa11.17□□□□□ -0.62
CLIP1-216ENST00000541410 GTSF1Q8WW33 167 aa11.17□□□□□ -0.62
CLIP1-216ENST00000541410 VGLL1Q99990 258 aa11.17□□□□□ -0.62
CLIP1-216ENST00000541410 CSN1S1P47710 185 aa11.16□□□□□ -0.62
CLIP1-216ENST00000541410 PSG9Q00887 426 aa11.16□□□□□ -0.62
CLIP1-216ENST00000541410 PGLYRP4Q96LB8 373 aa11.16□□□□□ -0.62
CLIP1-216ENST00000541410 SSBP4Q9BWG4 385 aaPredicted RBP11.16□□□□□ -0.62
CLIP1-216ENST00000541410 ZNF331Q9NQX6 463 aaPredicted RBP11.16□□□□□ -0.62
CLIP1-216ENST00000541410 CUBNO60494 3623 aa11.16□□□□□ -0.62
CLIP1-216ENST00000541410 PRAC2D3DTV9 90 aa11.16□□□□□ -0.62
CLIP1-216ENST00000541410 J3QKU1 62 aa11.16□□□□□ -0.62
CLIP1-216ENST00000541410 HOXA3O43365 443 aaPredicted RBP11.16□□□□□ -0.62
CLIP1-216ENST00000541410 CRIP1P50238 77 aa11.16□□□□□ -0.62
CLIP1-216ENST00000541410 RAB9AP51151 201 aa11.16□□□□□ -0.62
CLIP1-216ENST00000541410 ERCC8Q13216 396 aa11.16□□□□□ -0.62
CLIP1-216ENST00000541410 PYY3Q5JQD4 70 aa11.16□□□□□ -0.62
CLIP1-216ENST00000541410 GDF5OSQ5U4N7 250 aa11.16□□□□□ -0.62
CLIP1-216ENST00000541410 OR5R1Q8NH85 324 aa11.16□□□□□ -0.62
CLIP1-216ENST00000541410 PRSS22Q9GZN4 317 aa11.16□□□□□ -0.62
CLIP1-216ENST00000541410 NIT2Q9NQR4 276 aa11.16□□□□□ -0.62
CLIP1-216ENST00000541410 AMBPP02760 352 aa11.15□□□□□ -0.62
CLIP1-216ENST00000541410 SSTP61278 116 aa11.15□□□□□ -0.62
CLIP1-216ENST00000541410 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.15□□□□□ -0.62
CLIP1-216ENST00000541410 LRRC75A-AS1Q8N1F1 130 aa11.15□□□□□ -0.62
CLIP1-216ENST00000541410 OR2D3Q8NGH3 330 aa11.15□□□□□ -0.62
CLIP1-216ENST00000541410 PACRGQ96M98 296 aaPredicted RBP11.15□□□□□ -0.62
CLIP1-216ENST00000541410 IGKV3-7A0A075B6H7 116 aa11.14□□□□□ -0.63
CLIP1-216ENST00000541410 EDN2P20800 178 aa11.14□□□□□ -0.63
CLIP1-216ENST00000541410 SMIM12Q96EX1 92 aa11.14□□□□□ -0.63
CLIP1-216ENST00000541410 GNB1LQ9BYB4 327 aa11.14□□□□□ -0.63
CLIP1-216ENST00000541410 IGLV1-40P01703 118 aa11.14□□□□□ -0.63
CLIP1-216ENST00000541410 SMIM6P0DI80 62 aa11.14□□□□□ -0.63
CLIP1-216ENST00000541410 SLAQ13239 276 aa11.14□□□□□ -0.63
CLIP1-216ENST00000541410 LCN12Q6JVE5 192 aa11.14□□□□□ -0.63
CLIP1-216ENST00000541410 MYO9AB2RTY4 2548 aa11.14□□□□□ -0.63
CLIP1-216ENST00000541410 PDZD2O15018 2839 aa11.14□□□□□ -0.63
CLIP1-216ENST00000541410 TMSB15BA0A087X1C1 80 aa11.13□□□□□ -0.63
CLIP1-216ENST00000541410 CRISP2P16562 243 aa11.13□□□□□ -0.63
CLIP1-216ENST00000541410 PSMG3-AS1Q96PY0 264 aa11.13□□□□□ -0.63
CLIP1-216ENST00000541410 TP53TG3Q9ULZ0 132 aa11.13□□□□□ -0.63
CLIP1-216ENST00000541410 FSHBP01225 129 aa11.13□□□□□ -0.63
CLIP1-216ENST00000541410 CFHR3Q02985 330 aa11.13□□□□□ -0.63
CLIP1-216ENST00000541410 ZNF492Q9P255 531 aa11.13□□□□□ -0.63
CLIP1-216ENST00000541410 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.12□□□□□ -0.63
CLIP1-216ENST00000541410 A8MWL6 223 aa11.12□□□□□ -0.63
CLIP1-216ENST00000541410 COA6Q5JTJ3 125 aaKnown RBP11.12□□□□□ -0.63
CLIP1-216ENST00000541410 CYB5R2Q6BCY4 276 aa11.12□□□□□ -0.63
CLIP1-216ENST00000541410 Q6YL49 198 aa11.12□□□□□ -0.63
CLIP1-216ENST00000541410 USMG5Q96IX5 58 aa11.12□□□□□ -0.63
CLIP1-216ENST00000541410 TPPP3Q9BW30 176 aa11.12□□□□□ -0.63
CLIP1-216ENST00000541410 VPREB3Q9UKI3 123 aa11.12□□□□□ -0.63
CLIP1-216ENST00000541410 ZFP30Q9Y2G7 519 aa11.12□□□□□ -0.63
CLIP1-216ENST00000541410 ZNF705DP0CH99 300 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-216ENST00000541410 ZNF705BP0CI00 300 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-216ENST00000541410 TM4SF20Q53R12 229 aa11.12□□□□□ -0.63
CLIP1-216ENST00000541410 SRIP30626 198 aa11.11□□□□□ -0.63
CLIP1-216ENST00000541410 RPL11P62913 178 aaKnown RBP11.11□□□□□ -0.63
CLIP1-216ENST00000541410 HIST2H2BDQ6DRA6 164 aa11.11□□□□□ -0.63
CLIP1-216ENST00000541410 WDR73Q6P4I2 378 aa11.11□□□□□ -0.63
CLIP1-216ENST00000541410 C8orf86Q6ZUL3 223 aa11.11□□□□□ -0.63
CLIP1-216ENST00000541410 TRAV8-2A0A0B4J237 113 aa11.11□□□□□ -0.63
CLIP1-216ENST00000541410 MUC21A0A0G2JKD1 596 aa11.11□□□□□ -0.63
CLIP1-216ENST00000541410 MUC21A0A140T8X8 626 aa11.11□□□□□ -0.63
CLIP1-216ENST00000541410 APCSP02743 223 aa11.11□□□□□ -0.63
CLIP1-216ENST00000541410 RPLP1P05386 114 aaKnown RBP11.11□□□□□ -0.63
CLIP1-216ENST00000541410 S100A7P31151 101 aa11.11□□□□□ -0.63
CLIP1-216ENST00000541410 ZNF80P51504 273 aaPredicted RBP11.11□□□□□ -0.63
CLIP1-216ENST00000541410 LINC00310P59036 64 aa11.11□□□□□ -0.63
CLIP1-216ENST00000541410 DEFB1P60022 68 aa11.11□□□□□ -0.63
CLIP1-216ENST00000541410 MUC21Q5SSG8 566 aa11.11□□□□□ -0.63
CLIP1-216ENST00000541410 PRR25Q96S07 402 aa11.11□□□□□ -0.63
CLIP1-216ENST00000541410 U3KQE9 123 aa11.11□□□□□ -0.63
CLIP1-216ENST00000541410 NPIPB6E9PJ23 425 aa11.1□□□□□ -0.63
CLIP1-216ENST00000541410 H3BUA1 57 aa11.1□□□□□ -0.63
CLIP1-216ENST00000541410 SERF1AO75920 110 aa11.1□□□□□ -0.63
CLIP1-216ENST00000541410 CT45A10P0DMU9 189 aa11.1□□□□□ -0.63
CLIP1-216ENST00000541410 SRD5A1P18405 259 aa11.1□□□□□ -0.63
CLIP1-216ENST00000541410 BAGE3Q86Y29 109 aa11.1□□□□□ -0.63
CLIP1-216ENST00000541410 GCN1Q92616 2671 aaKnown RBP11.1□□□□□ -0.63
CLIP1-216ENST00000541410 TRBV6-1A0A0K0K1D8 114 aa11.1□□□□□ -0.63
CLIP1-216ENST00000541410 NDUFA4O00483 81 aa11.1□□□□□ -0.63
CLIP1-216ENST00000541410 HLA-DQA1P01909 254 aa11.1□□□□□ -0.63
CLIP1-216ENST00000541410 PSMB8P28062 276 aa11.1□□□□□ -0.63
CLIP1-216ENST00000541410 NPFFR1Q9GZQ6 430 aa11.1□□□□□ -0.63
CLIP1-216ENST00000541410 NF1P21359 2839 aa11.09□□□□□ -0.63
CLIP1-216ENST00000541410 SORL1Q92673 2214 aa11.09□□□□□ -0.63
CLIP1-216ENST00000541410 A0A087X0K7 114 aa11.09□□□□□ -0.63
CLIP1-216ENST00000541410 A0A0G2JLM5 398 aa11.09□□□□□ -0.63
CLIP1-216ENST00000541410 MT-ND6P03923 174 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms