RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 OR8A1Q8NGG7 326 aa8.45□□□□□ -1.06
CLIP1-213ENST00000540338 ZNF48Q96MX3 618 aaPredicted RBP8.45□□□□□ -1.06
CLIP1-213ENST00000540338 F2Z2F3 143 aa8.45□□□□□ -1.06
CLIP1-213ENST00000540338 EBI3Q14213 229 aa8.45□□□□□ -1.06
CLIP1-213ENST00000540338 TM4SF20Q53R12 229 aa8.45□□□□□ -1.06
CLIP1-213ENST00000540338 LYZL1Q6UWQ5 148 aa8.45□□□□□ -1.06
CLIP1-213ENST00000540338 ORMDL3Q8N138 153 aa8.45□□□□□ -1.06
CLIP1-213ENST00000540338 ALKBH7Q9BT30 221 aaPredicted RBP8.45□□□□□ -1.06
CLIP1-213ENST00000540338 AP1S3Q96PC3 154 aa8.45□□□□□ -1.06
CLIP1-213ENST00000540338 MIEN1Q9BRT3 115 aa8.45□□□□□ -1.06
CLIP1-213ENST00000540338 ARMS2P0C7Q2 107 aa8.44□□□□□ -1.06
CLIP1-213ENST00000540338 C3orf79P0CE67 100 aa8.44□□□□□ -1.06
CLIP1-213ENST00000540338 USMG5Q96IX5 58 aa8.44□□□□□ -1.06
CLIP1-213ENST00000540338 C8orf49Q96NF6 230 aa8.44□□□□□ -1.06
CLIP1-213ENST00000540338 HIVEP3Q5T1R4 2406 aa8.44□□□□□ -1.06
CLIP1-213ENST00000540338 MYCNOSP40205 109 aa8.44□□□□□ -1.06
CLIP1-213ENST00000540338 CYB5R2Q6BCY4 276 aa8.44□□□□□ -1.06
CLIP1-213ENST00000540338 LOC102724200A0A096LPH7 203 aaPredicted RBP8.44□□□□□ -1.06
CLIP1-213ENST00000540338 SMIM17P0DL12 118 aa8.44□□□□□ -1.06
CLIP1-213ENST00000540338 IGLC2P0DOY2 106 aa8.44□□□□□ -1.06
CLIP1-213ENST00000540338 SLC25A16P16260 332 aa8.44□□□□□ -1.06
CLIP1-213ENST00000540338 C14orf144Q96I85 54 aa8.44□□□□□ -1.06
CLIP1-213ENST00000540338 NPFFR1Q9GZQ6 430 aa8.44□□□□□ -1.06
CLIP1-213ENST00000540338 MAP1LC3AQ9H492 121 aa8.44□□□□□ -1.06
CLIP1-213ENST00000540338 MGAQ8IWI9 3026 aa8.44□□□□□ -1.06
CLIP1-213ENST00000540338 MRGPRG-AS1Q2M3A8 158 aa8.43□□□□□ -1.06
CLIP1-213ENST00000540338 ZNF502Q8TBZ5 544 aa8.43□□□□□ -1.06
CLIP1-213ENST00000540338 PRR25Q96S07 402 aa8.43□□□□□ -1.06
CLIP1-213ENST00000540338 POLR3KQ9Y2Y1 108 aaPredicted RBP8.43□□□□□ -1.06
CLIP1-213ENST00000540338 HIST1H1AQ02539 215 aaPredicted RBP8.43□□□□□ -1.06
CLIP1-213ENST00000540338 C10orf105Q8TEF2 133 aa8.43□□□□□ -1.06
CLIP1-213ENST00000540338 ZMAT5Q9UDW3 170 aaKnown RBP8.43□□□□□ -1.06
CLIP1-213ENST00000540338 HAX1O00165 279 aa8.43□□□□□ -1.06
CLIP1-213ENST00000540338 RCHY1Q96PM5 261 aa8.43□□□□□ -1.06
CLIP1-213ENST00000540338 FAM181BA6NEQ2 426 aa8.43□□□□□ -1.06
CLIP1-213ENST00000540338 GATA3P23771 443 aa8.43□□□□□ -1.06
CLIP1-213ENST00000540338 A0A1B0GV90 55 aa8.42□□□□□ -1.06
CLIP1-213ENST00000540338 ZNF138P52744 262 aa8.42□□□□□ -1.06
CLIP1-213ENST00000540338 DPF1Q92782 380 aa8.42□□□□□ -1.06
CLIP1-213ENST00000540338 A0A1W2PPR1 153 aa8.42□□□□□ -1.06
CLIP1-213ENST00000540338 OR4C46A6NHA9 309 aa8.42□□□□□ -1.06
CLIP1-213ENST00000540338 PRSS1P07477 247 aa8.42□□□□□ -1.06
CLIP1-213ENST00000540338 TFPI2P48307 235 aa8.42□□□□□ -1.06
CLIP1-213ENST00000540338 MLST8Q9BVC4 326 aa8.42□□□□□ -1.06
CLIP1-213ENST00000540338 RPLP1P05386 114 aaKnown RBP8.42□□□□□ -1.06
CLIP1-213ENST00000540338 ERCC8Q13216 396 aa8.42□□□□□ -1.06
CLIP1-213ENST00000540338 MBD6Q96DN6 1003 aa8.42□□□□□ -1.06
CLIP1-213ENST00000540338 TCAPO15273 167 aa8.41□□□□□ -1.06
CLIP1-213ENST00000540338 CTAG1AP78358 180 aa8.41□□□□□ -1.06
CLIP1-213ENST00000540338 C9orf139Q6ZV77 190 aa8.41□□□□□ -1.06
CLIP1-213ENST00000540338 OR4X2Q8NGF9 303 aa8.41□□□□□ -1.06
CLIP1-213ENST00000540338 DSCAML1Q8TD84 2053 aa8.41□□□□□ -1.06
CLIP1-213ENST00000540338 IGHV4-30-2A0A087WSY4 118 aa8.41□□□□□ -1.06
CLIP1-213ENST00000540338 C19orf71A6NCJ1 209 aa8.41□□□□□ -1.06
CLIP1-213ENST00000540338 RNF182Q8N6D2 247 aa8.41□□□□□ -1.06
CLIP1-213ENST00000540338 Q8N6K4 173 aa8.41□□□□□ -1.06
CLIP1-213ENST00000540338 C5orf56Q8N8D9 126 aa8.41□□□□□ -1.06
CLIP1-213ENST00000540338 LINC01356Q8N9X3 169 aa8.41□□□□□ -1.06
CLIP1-213ENST00000540338 TRBV6-1A0A0K0K1D8 114 aa8.41□□□□□ -1.06
CLIP1-213ENST00000540338 G0S2P27469 103 aa8.41□□□□□ -1.06
CLIP1-213ENST00000540338 PPIFP30405 207 aaKnown RBP8.41□□□□□ -1.06
CLIP1-213ENST00000540338 PIP4P2Q8N4L2 257 aa8.41□□□□□ -1.06
CLIP1-213ENST00000540338 CREBBPQ92793 2442 aa8.41□□□□□ -1.06
CLIP1-213ENST00000540338 ESDP10768 282 aa8.4□□□□□ -1.06
CLIP1-213ENST00000540338 GTSF1Q8WW33 167 aa8.4□□□□□ -1.06
CLIP1-213ENST00000540338 VGLL1Q99990 258 aa8.4□□□□□ -1.06
CLIP1-213ENST00000540338 TRAV9-2A0A087WT02 112 aa8.4□□□□□ -1.06
CLIP1-213ENST00000540338 COL5A1-AS1Q5SY13 56 aa8.4□□□□□ -1.06
CLIP1-213ENST00000540338 PRSS22Q9GZN4 317 aa8.4□□□□□ -1.06
CLIP1-213ENST00000540338 PHLDA3Q9Y5J5 127 aa8.4□□□□□ -1.06
CLIP1-213ENST00000540338 D6R8Y8 96 aa8.4□□□□□ -1.06
CLIP1-213ENST00000540338 OVOL1O14753 267 aa8.4□□□□□ -1.06
CLIP1-213ENST00000540338 HLA-DMBP28068 263 aa8.4□□□□□ -1.06
CLIP1-213ENST00000540338 KLF5Q13887 457 aaPredicted RBP8.4□□□□□ -1.06
CLIP1-213ENST00000540338 LINC00322Q6ZN03 302 aaPredicted RBP8.4□□□□□ -1.06
CLIP1-213ENST00000540338 ARL6IP6Q8N6S5 226 aa8.4□□□□□ -1.06
CLIP1-213ENST00000540338 PPBPP02775 128 aa8.4□□□□□ -1.07
CLIP1-213ENST00000540338 IGHV4-38-2P0DP08 117 aa8.39□□□□□ -1.07
CLIP1-213ENST00000540338 C20orf144Q9BQM9 153 aa8.39□□□□□ -1.07
CLIP1-213ENST00000540338 BUB3O43684 328 aa8.39□□□□□ -1.07
CLIP1-213ENST00000540338 EBLN2Q6P2I7 272 aa8.39□□□□□ -1.07
CLIP1-213ENST00000540338 F5H697 171 aa8.39□□□□□ -1.07
CLIP1-213ENST00000540338 MGPP08493 103 aa8.39□□□□□ -1.07
CLIP1-213ENST00000540338 PET117Q6UWS5 81 aa8.39□□□□□ -1.07
CLIP1-213ENST00000540338 C8orf86Q6ZUL3 223 aa8.39□□□□□ -1.07
CLIP1-213ENST00000540338 AMN1Q8IY45 258 aa8.39□□□□□ -1.07
CLIP1-213ENST00000540338 TMEM213A2RRL7 107 aa8.38□□□□□ -1.07
CLIP1-213ENST00000540338 SAMD13Q5VXD3 122 aa8.38□□□□□ -1.07
CLIP1-213ENST00000540338 SLC25A34Q6PIV7 304 aa8.38□□□□□ -1.07
CLIP1-213ENST00000540338 OVOL3O00110 214 aa8.38□□□□□ -1.07
CLIP1-213ENST00000540338 NDUFA4O00483 81 aa8.38□□□□□ -1.07
CLIP1-213ENST00000540338 SCGB2A2Q13296 93 aa8.38□□□□□ -1.07
CLIP1-213ENST00000540338 MYOZ3Q8TDC0 251 aa8.38□□□□□ -1.07
CLIP1-213ENST00000540338 TRAV21A0A0B4J279 112 aa8.38□□□□□ -1.07
CLIP1-213ENST00000540338 ASIPP42127 132 aa8.38□□□□□ -1.07
CLIP1-213ENST00000540338 SNRPD3P62318 126 aaKnown RBP8.38□□□□□ -1.07
CLIP1-213ENST00000540338 TEX43Q6ZNM6 134 aa8.38□□□□□ -1.07
CLIP1-213ENST00000540338 LINC00477Q96M19 166 aa8.38□□□□□ -1.07
CLIP1-213ENST00000540338 LINC01548A6NM66 108 aa8.37□□□□□ -1.07
CLIP1-213ENST00000540338 ZNF25P17030 456 aaPredicted RBP8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms