RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 PEF1Q9UBV8 284 aaKnown RBP15.95■□□□□ 0.14
TMEM260-203ENST00000539559 E7EQL1 145 aa15.94■□□□□ 0.14
TMEM260-203ENST00000539559 IGHV3-23P01764 117 aa15.94■□□□□ 0.14
TMEM260-203ENST00000539559 ABCA4P78363 2273 aa15.94■□□□□ 0.14
TMEM260-203ENST00000539559 IGHV3OR16-8A0A075B7F1 116 aa15.94■□□□□ 0.14
TMEM260-203ENST00000539559 PPBPP02775 128 aa15.93■□□□□ 0.14
TMEM260-203ENST00000539559 TM4SF20Q53R12 229 aa15.93■□□□□ 0.14
TMEM260-203ENST00000539559 Q8TAT8 98 aa15.93■□□□□ 0.14
TMEM260-203ENST00000539559 K7EQM0 130 aa15.93■□□□□ 0.14
TMEM260-203ENST00000539559 VKORC1Q9BQB6 163 aa15.93■□□□□ 0.14
TMEM260-203ENST00000539559 H3BUT2 72 aa15.92■□□□□ 0.14
TMEM260-203ENST00000539559 CT45A10P0DMU9 189 aa15.92■□□□□ 0.14
TMEM260-203ENST00000539559 PCP2Q8IVA1 136 aa15.92■□□□□ 0.14
TMEM260-203ENST00000539559 KAAG1Q9UBP8 84 aa15.92■□□□□ 0.14
TMEM260-203ENST00000539559 TLN1Q9Y490 2541 aaKnown RBP15.92■□□□□ 0.14
TMEM260-203ENST00000539559 GAGE10A6NGK3 116 aa15.92■□□□□ 0.14
TMEM260-203ENST00000539559 TIMM23O14925 209 aa15.92■□□□□ 0.14
TMEM260-203ENST00000539559 MRPS12O15235 138 aaKnown RBP15.92■□□□□ 0.14
TMEM260-203ENST00000539559 SH2D1AO60880 128 aa15.92■□□□□ 0.14
TMEM260-203ENST00000539559 MRPL51Q4U2R6 128 aaKnown RBP15.92■□□□□ 0.14
TMEM260-203ENST00000539559 RALYQ9UKM9 306 aaKnown RBP15.92■□□□□ 0.14
TMEM260-203ENST00000539559 ASH1LQ9NR48 2969 aaKnown RBP15.92■□□□□ 0.14
TMEM260-203ENST00000539559 TMEM189A5PLL7 270 aa15.91■□□□□ 0.14
TMEM260-203ENST00000539559 GAS8-AS1O95177 125 aa15.91■□□□□ 0.14
TMEM260-203ENST00000539559 APOBEC3AP31941 199 aaPredicted RBP15.91■□□□□ 0.14
TMEM260-203ENST00000539559 C18orf15Q96N68 181 aa15.91■□□□□ 0.14
TMEM260-203ENST00000539559 WNK2Q9Y3S1 2297 aa15.91■□□□□ 0.14
TMEM260-203ENST00000539559 NMUP48645 174 aa15.91■□□□□ 0.14
TMEM260-203ENST00000539559 IGF2RP11717 2491 aa15.91■□□□□ 0.14
TMEM260-203ENST00000539559 SHISA9B4DS77 424 aa15.91■□□□□ 0.14
TMEM260-203ENST00000539559 NPYP01303 97 aa15.91■□□□□ 0.14
TMEM260-203ENST00000539559 FAM104BQ5XKR9 115 aa15.91■□□□□ 0.14
TMEM260-203ENST00000539559 HLA-DMBP28068 263 aa15.9■□□□□ 0.14
TMEM260-203ENST00000539559 MSRB1Q9NZV6 116 aa15.9■□□□□ 0.14
TMEM260-203ENST00000539559 DKK2Q9UBU2 259 aa15.9■□□□□ 0.14
TMEM260-203ENST00000539559 IGHV3-35A0A0C4DH35 117 aa15.9■□□□□ 0.14
TMEM260-203ENST00000539559 RIPPLY3P57055 190 aa15.9■□□□□ 0.14
TMEM260-203ENST00000539559 ORMDL3Q8N138 153 aa15.9■□□□□ 0.14
TMEM260-203ENST00000539559 TTTY13Q9BZ97 58 aa15.9■□□□□ 0.14
TMEM260-203ENST00000539559 ONECUT1Q9UBC0 465 aa15.9■□□□□ 0.14
TMEM260-203ENST00000539559 PPIAL4CA0A0B4J2A2 164 aa15.89■□□□□ 0.13
TMEM260-203ENST00000539559 TRBV6-1A0A0K0K1D8 114 aa15.89■□□□□ 0.13
TMEM260-203ENST00000539559 LY6HO94772 140 aa15.89■□□□□ 0.13
TMEM260-203ENST00000539559 PPIAL4GP0DN37 164 aa15.89■□□□□ 0.13
TMEM260-203ENST00000539559 GATD1Q8NB37 220 aa15.89■□□□□ 0.13
TMEM260-203ENST00000539559 MEGF9Q9H1U4 602 aa15.89■□□□□ 0.13
TMEM260-203ENST00000539559 MED13LQ71F56 2210 aa15.89■□□□□ 0.13
TMEM260-203ENST00000539559 NPIPB5A8MRT5 1133 aa15.89■□□□□ 0.13
TMEM260-203ENST00000539559 ZNF80P51504 273 aaPredicted RBP15.89■□□□□ 0.13
TMEM260-203ENST00000539559 PAX2Q02962 417 aa15.89■□□□□ 0.13
TMEM260-203ENST00000539559 CACNA1BQ00975 2339 aa15.88■□□□□ 0.13
TMEM260-203ENST00000539559 GNG7O60262 68 aa15.88■□□□□ 0.13
TMEM260-203ENST00000539559 EGR2P11161 476 aaPredicted RBP15.88■□□□□ 0.13
TMEM260-203ENST00000539559 KLRB1Q12918 225 aa15.88■□□□□ 0.13
TMEM260-203ENST00000539559 KIR3DS1Q14943 382 aa15.88■□□□□ 0.13
TMEM260-203ENST00000539559 TWIST1Q15672 202 aa15.88■□□□□ 0.13
TMEM260-203ENST00000539559 ZNF493Q6ZR52 646 aa15.88■□□□□ 0.13
TMEM260-203ENST00000539559 CKS2P33552 79 aa15.87■□□□□ 0.13
TMEM260-203ENST00000539559 AP1S3Q96PC3 154 aa15.87■□□□□ 0.13
TMEM260-203ENST00000539559 AAMDCQ9H7C9 122 aa15.87■□□□□ 0.13
TMEM260-203ENST00000539559 RPS20P60866 119 aaKnown RBP15.87■□□□□ 0.13
TMEM260-203ENST00000539559 SEC11AP67812 179 aa15.87■□□□□ 0.13
TMEM260-203ENST00000539559 BOD1L2Q8IYS8 172 aa15.87■□□□□ 0.13
TMEM260-203ENST00000539559 SPTBN4Q9H254 2564 aa15.87■□□□□ 0.13
TMEM260-203ENST00000539559 KLRD1Q13241 179 aa15.86■□□□□ 0.13
TMEM260-203ENST00000539559 IFI27L1Q96BM0 104 aa15.86■□□□□ 0.13
TMEM260-203ENST00000539559 VGLL1Q99990 258 aa15.86■□□□□ 0.13
TMEM260-203ENST00000539559 A1L4Q6 167 aa15.86■□□□□ 0.13
TMEM260-203ENST00000539559 SMAD7O15105 426 aaKnown RBP15.86■□□□□ 0.13
TMEM260-203ENST00000539559 HBDP02042 147 aa15.86■□□□□ 0.13
TMEM260-203ENST00000539559 PPIFP30405 207 aaKnown RBP15.86■□□□□ 0.13
TMEM260-203ENST00000539559 HES1Q14469 280 aa15.86■□□□□ 0.13
TMEM260-203ENST00000539559 A0A1B0GW15 77 aa15.85■□□□□ 0.13
TMEM260-203ENST00000539559 VSTM5A8MXK1 200 aa15.85■□□□□ 0.13
TMEM260-203ENST00000539559 LGALS9BQ3B8N2 356 aa15.85■□□□□ 0.13
TMEM260-203ENST00000539559 LGALS9CQ6DKI2 356 aa15.85■□□□□ 0.13
TMEM260-203ENST00000539559 ARL6IP6Q8N6S5 226 aa15.85■□□□□ 0.13
TMEM260-203ENST00000539559 TNFRSF14Q92956 283 aa15.85■□□□□ 0.13
TMEM260-203ENST00000539559 C9orf118A6NHY6 69 aa15.85■□□□□ 0.13
TMEM260-203ENST00000539559 Q6AWC8 147 aa15.85■□□□□ 0.13
TMEM260-203ENST00000539559 U3KQK5 164 aa15.85■□□□□ 0.13
TMEM260-203ENST00000539559 WI2-2373I1.2A0A1W2PRP0 233 aa15.84■□□□□ 0.13
TMEM260-203ENST00000539559 NDUFS7O75251 213 aa15.84■□□□□ 0.13
TMEM260-203ENST00000539559 EVI2AP22794 236 aa15.84■□□□□ 0.13
TMEM260-203ENST00000539559 UFSP1Q6NVU6 142 aa15.84■□□□□ 0.13
TMEM260-203ENST00000539559 LYPD1Q8N2G4 141 aa15.84■□□□□ 0.13
TMEM260-203ENST00000539559 PAX8Q06710 450 aa15.84■□□□□ 0.13
TMEM260-203ENST00000539559 FER1L6-AS1Q8NA97 138 aa15.84■□□□□ 0.13
TMEM260-203ENST00000539559 SPTA1P02549 2419 aa15.84■□□□□ 0.13
TMEM260-203ENST00000539559 A0A0G2JLM5 398 aa15.83■□□□□ 0.13
TMEM260-203ENST00000539559 K7EMI3 77 aa15.83■□□□□ 0.13
TMEM260-203ENST00000539559 K7ERU9 68 aa15.83■□□□□ 0.13
TMEM260-203ENST00000539559 ADAMTSL5Q6ZMM2 481 aa15.83■□□□□ 0.13
TMEM260-203ENST00000539559 GATA1P15976 413 aaPredicted RBP15.83■□□□□ 0.12
TMEM260-203ENST00000539559 PRR25Q96S07 402 aa15.83■□□□□ 0.12
TMEM260-203ENST00000539559 LY6LH3BQJ8 138 aa15.82■□□□□ 0.12
TMEM260-203ENST00000539559 H3BRM9 83 aa15.82■□□□□ 0.12
TMEM260-203ENST00000539559 SMIM15Q7Z3B0 74 aa15.82■□□□□ 0.12
TMEM260-203ENST00000539559 FANCD2OSQ96PS1 177 aa15.82■□□□□ 0.12
TMEM260-203ENST00000539559 IGKV2D-26A0A0A0MRZ7 120 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms