RNA–Protein interactions for RNA: ENST00000538333.3

LIMK1-208, Transcript of LIM domain kinase 1, humanhuman

TSL 2 BASIC

Gene LIMK1, Length 2,170 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-208ENST00000538333 CHEK1O14757 476 aa10.84□□□□□ -0.67
LIMK1-208ENST00000538333 BUB3O43684 328 aa10.84□□□□□ -0.67
LIMK1-208ENST00000538333 IGKV2D-40P01614 121 aaPredicted RBP10.84□□□□□ -0.67
LIMK1-208ENST00000538333 S100A7P31151 101 aa10.84□□□□□ -0.67
LIMK1-208ENST00000538333 CLEC19AQ6UXS0 136 aa10.84□□□□□ -0.67
LIMK1-208ENST00000538333 A0A087X0K7 114 aa10.84□□□□□ -0.67
LIMK1-208ENST00000538333 TRBV7-1A0A0A6YYK4 115 aa10.84□□□□□ -0.67
LIMK1-208ENST00000538333 IGHV4-38-2P0DP08 117 aa10.84□□□□□ -0.67
LIMK1-208ENST00000538333 TDRG1Q3Y452 100 aa10.84□□□□□ -0.67
LIMK1-208ENST00000538333 EEF1AKMT3Q96AZ1 226 aa10.84□□□□□ -0.67
LIMK1-208ENST00000538333 URB1-AS1Q96HZ7 61 aa10.84□□□□□ -0.67
LIMK1-208ENST00000538333 RAB9AP51151 201 aa10.83□□□□□ -0.68
LIMK1-208ENST00000538333 A0A1B0GUT8 65 aa10.83□□□□□ -0.68
LIMK1-208ENST00000538333 CT45A10P0DMU9 189 aa10.83□□□□□ -0.68
LIMK1-208ENST00000538333 HLA-DMBP28068 263 aa10.83□□□□□ -0.68
LIMK1-208ENST00000538333 KRTDAPP60985 99 aa10.83□□□□□ -0.68
LIMK1-208ENST00000538333 IGFL4Q6B9Z1 124 aa10.83□□□□□ -0.68
LIMK1-208ENST00000538333 GATD1Q8NB37 220 aa10.83□□□□□ -0.68
LIMK1-208ENST00000538333 PRR25Q96S07 402 aa10.83□□□□□ -0.68
LIMK1-208ENST00000538333 SPOCK3Q9BQ16 436 aa10.83□□□□□ -0.68
LIMK1-208ENST00000538333 USP9XQ93008 2570 aaPredicted RBP10.82□□□□□ -0.68
LIMK1-208ENST00000538333 LOC102724200A0A096LPH7 203 aaPredicted RBP10.82□□□□□ -0.68
LIMK1-208ENST00000538333 TRAV41A0A0B4J266 112 aa10.82□□□□□ -0.68
LIMK1-208ENST00000538333 FBLL1A6NHQ2 334 aaKnown RBP10.82□□□□□ -0.68
LIMK1-208ENST00000538333 ARMS2P0C7Q2 107 aa10.82□□□□□ -0.68
LIMK1-208ENST00000538333 C3orf79P0CE67 100 aa10.82□□□□□ -0.68
LIMK1-208ENST00000538333 NTF3P20783 257 aa10.82□□□□□ -0.68
LIMK1-208ENST00000538333 SAPCD1Q5SSQ6 148 aa10.82□□□□□ -0.68
LIMK1-208ENST00000538333 Q6AWC8 147 aa10.82□□□□□ -0.68
LIMK1-208ENST00000538333 ATP6V0BQ99437 205 aa10.82□□□□□ -0.68
LIMK1-208ENST00000538333 VGLL1Q99990 258 aa10.82□□□□□ -0.68
LIMK1-208ENST00000538333 NDFIP1Q9BT67 221 aa10.82□□□□□ -0.68
LIMK1-208ENST00000538333 SH2D1AO60880 128 aa10.81□□□□□ -0.68
LIMK1-208ENST00000538333 HSBP1O75506 76 aa10.81□□□□□ -0.68
LIMK1-208ENST00000538333 MSMBP08118 114 aa10.81□□□□□ -0.68
LIMK1-208ENST00000538333 RELQ04864 619 aaPredicted RBP10.81□□□□□ -0.68
LIMK1-208ENST00000538333 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.81□□□□□ -0.68
LIMK1-208ENST00000538333 LURAP1LQ8IV03 231 aa10.81□□□□□ -0.68
LIMK1-208ENST00000538333 C20orf144Q9BQM9 153 aa10.81□□□□□ -0.68
LIMK1-208ENST00000538333 LINC00527Q9UJ94 153 aa10.81□□□□□ -0.68
LIMK1-208ENST00000538333 FLNCQ14315 2725 aa10.81□□□□□ -0.68
LIMK1-208ENST00000538333 FAM223BA6NKX1 122 aa10.8□□□□□ -0.68
LIMK1-208ENST00000538333 ATP5G2Q06055 141 aa10.8□□□□□ -0.68
LIMK1-208ENST00000538333 FAM162BQ5T6X4 162 aa10.8□□□□□ -0.68
LIMK1-208ENST00000538333 LCN12Q6JVE5 192 aa10.8□□□□□ -0.68
LIMK1-208ENST00000538333 RNASEKQ6P5S7 137 aaKnown RBP10.8□□□□□ -0.68
LIMK1-208ENST00000538333 FAM223AQ8IWN6 122 aa10.8□□□□□ -0.68
LIMK1-208ENST00000538333 ZNF843Q8N446 348 aa10.8□□□□□ -0.68
LIMK1-208ENST00000538333 U3KQE9 123 aa10.8□□□□□ -0.68
LIMK1-208ENST00000538333 SPG11Q96JI7 2443 aa10.8□□□□□ -0.68
LIMK1-208ENST00000538333 IGF1P05019 195 aa10.8□□□□□ -0.68
LIMK1-208ENST00000538333 RIGQ13278 110 aa10.8□□□□□ -0.68
LIMK1-208ENST00000538333 Q8TAT8 98 aa10.8□□□□□ -0.68
LIMK1-208ENST00000538333 A0A1B0GW15 77 aa10.79□□□□□ -0.68
LIMK1-208ENST00000538333 A6NDX4 124 aa10.79□□□□□ -0.68
LIMK1-208ENST00000538333 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.79□□□□□ -0.68
LIMK1-208ENST00000538333 IGHV3-66A0A0C4DH42 116 aa10.79□□□□□ -0.68
LIMK1-208ENST00000538333 ZNF80P51504 273 aaPredicted RBP10.79□□□□□ -0.68
LIMK1-208ENST00000538333 METTL26Q96S19 204 aa10.79□□□□□ -0.68
LIMK1-208ENST00000538333 SLC50A1Q9BRV3 221 aa10.79□□□□□ -0.68
LIMK1-208ENST00000538333 VAMP8Q9BV40 100 aa10.79□□□□□ -0.68
LIMK1-208ENST00000538333 MYO18BQ8IUG5 2567 aa10.78□□□□□ -0.68
LIMK1-208ENST00000538333 TMEM189A5PLL7 270 aa10.78□□□□□ -0.68
LIMK1-208ENST00000538333 FAM181BA6NEQ2 426 aa10.78□□□□□ -0.68
LIMK1-208ENST00000538333 PRAC2D3DTV9 90 aa10.78□□□□□ -0.68
LIMK1-208ENST00000538333 H3BUX3 64 aa10.78□□□□□ -0.68
LIMK1-208ENST00000538333 M0QZ24 198 aa10.78□□□□□ -0.68
LIMK1-208ENST00000538333 M0R2Z0 102 aa10.78□□□□□ -0.68
LIMK1-208ENST00000538333 IGHG2P01859 326 aa10.78□□□□□ -0.68
LIMK1-208ENST00000538333 PPIFP30405 207 aaKnown RBP10.78□□□□□ -0.68
LIMK1-208ENST00000538333 ZNF575Q86XF7 245 aa10.78□□□□□ -0.68
LIMK1-208ENST00000538333 BORCS7Q96B45 105 aa10.78□□□□□ -0.68
LIMK1-208ENST00000538333 PSMG3-AS1Q96PY0 264 aa10.78□□□□□ -0.68
LIMK1-208ENST00000538333 PAM16Q9Y3D7 125 aa10.78□□□□□ -0.68
LIMK1-208ENST00000538333 IGHV3OR16-13A0A075B7E8 117 aa10.77□□□□□ -0.68
LIMK1-208ENST00000538333 IGHV3-74A0A0B4J1X5 117 aa10.77□□□□□ -0.68
LIMK1-208ENST00000538333 BRI3O95415 125 aa10.77□□□□□ -0.68
LIMK1-208ENST00000538333 AVPP01185 164 aa10.77□□□□□ -0.68
LIMK1-208ENST00000538333 TRGV3P03979 118 aa10.77□□□□□ -0.68
LIMK1-208ENST00000538333 LY6EQ16553 131 aa10.77□□□□□ -0.68
LIMK1-208ENST00000538333 EBLN2Q6P2I7 272 aa10.77□□□□□ -0.68
LIMK1-208ENST00000538333 ZNF493Q6ZR52 646 aa10.77□□□□□ -0.68
LIMK1-208ENST00000538333 NRGNQ92686 78 aa10.77□□□□□ -0.68
LIMK1-208ENST00000538333 CHCHD1Q96BP2 118 aaKnown RBP10.77□□□□□ -0.68
LIMK1-208ENST00000538333 RBAKDNA6NC62 111 aa10.77□□□□□ -0.69
LIMK1-208ENST00000538333 C2orf70A6NJV1 201 aa10.77□□□□□ -0.69
LIMK1-208ENST00000538333 ZNF207O43670 478 aaKnown RBP10.77□□□□□ -0.69
LIMK1-208ENST00000538333 LYZL1Q6UWQ5 148 aa10.77□□□□□ -0.69
LIMK1-208ENST00000538333 RNF182Q8N6D2 247 aa10.77□□□□□ -0.69
LIMK1-208ENST00000538333 HIF1ANQ9NWT6 349 aa10.77□□□□□ -0.69
LIMK1-208ENST00000538333 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.77□□□□□ -0.692e-6■■■□□ 17.1
LIMK1-208ENST00000538333 TMSB15BA0A087X1C1 80 aa10.76□□□□□ -0.69
LIMK1-208ENST00000538333 TRAV8-2A0A0B4J237 113 aa10.76□□□□□ -0.69
LIMK1-208ENST00000538333 B4DSR2 109 aa10.76□□□□□ -0.69
LIMK1-208ENST00000538333 CTRLP40313 264 aa10.76□□□□□ -0.69
LIMK1-208ENST00000538333 LBHQ53QV2 105 aaPredicted RBP10.76□□□□□ -0.69
LIMK1-208ENST00000538333 DMRTA1Q5VZB9 504 aa10.76□□□□□ -0.69
LIMK1-208ENST00000538333 TPPP3Q9BW30 176 aa10.76□□□□□ -0.69
LIMK1-208ENST00000538333 CELSR2Q9HCU4 2923 aa10.76□□□□□ -0.69
LIMK1-208ENST00000538333 IGHV3-49A0A0A0MS15 119 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms