RNA–Protein interactions for RNA: ENST00000513988.1

CLDND1-229, Transcript of claudin domain containing 1, human

TSL 2

Gene CLDND1, Length 598 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLDND1-229	ENST00000513988	BPIFC	Q8NFQ6	507 aa		4.57	□□□□□ -1.68
CLDND1-229	ENST00000513988	NRG4	Q8WWG1	115 aa		4.57	□□□□□ -1.68
CLDND1-229	ENST00000513988	GFI1	Q99684	422 aa		4.57	□□□□□ -1.68
CLDND1-229	ENST00000513988	ARPC5L	Q9BPX5	153 aa		4.57	□□□□□ -1.68
CLDND1-229	ENST00000513988	TMEM222	Q9H0R3	208 aa		4.57	□□□□□ -1.68
CLDND1-229	ENST00000513988	SH3BGRL3	Q9H299	93 aa		4.57	□□□□□ -1.68
CLDND1-229	ENST00000513988	C11orf21	Q9P2W6	132 aa		4.57	□□□□□ -1.68
CLDND1-229	ENST00000513988	TRAV4	A0A0B4J268	109 aa		4.56	□□□□□ -1.68
CLDND1-229	ENST00000513988	METTL21EP	A6NDL7	271 aa		4.56	□□□□□ -1.68
CLDND1-229	ENST00000513988	GNG2	P59768	71 aa		4.56	□□□□□ -1.68
CLDND1-229	ENST00000513988		Q0VG73	95 aa		4.56	□□□□□ -1.68
CLDND1-229	ENST00000513988	KLF9	Q13886	244 aa	Predicted RBP	4.56	□□□□□ -1.68
CLDND1-229	ENST00000513988	TPRXL	Q17RH7	258 aa		4.56	□□□□□ -1.68
CLDND1-229	ENST00000513988	NIT1	Q86X76	327 aa		4.56	□□□□□ -1.68
CLDND1-229	ENST00000513988	STPG4	Q8N801	248 aa		4.56	□□□□□ -1.68
CLDND1-229	ENST00000513988	OR4C5	Q8NGB2	326 aa		4.56	□□□□□ -1.68
CLDND1-229	ENST00000513988	OR52I2	Q8NH67	350 aa		4.56	□□□□□ -1.68
CLDND1-229	ENST00000513988	RHOXF1	Q8NHV9	184 aa		4.56	□□□□□ -1.68
CLDND1-229	ENST00000513988	TP53TG3	Q9ULZ0	132 aa		4.56	□□□□□ -1.68
CLDND1-229	ENST00000513988	AK6	Q9Y3D8	172 aa	Known RBP	4.56	□□□□□ -1.68
CLDND1-229	ENST00000513988	NEB	P20929	6669 aa		4.56	□□□□□ -1.68
CLDND1-229	ENST00000513988	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	4.55	□□□□□ -1.68
CLDND1-229	ENST00000513988	IGHV3-16	A0A0C4DH30	117 aa		4.55	□□□□□ -1.68
CLDND1-229	ENST00000513988	LINC00854	A0A1B0GVQ3	168 aa		4.55	□□□□□ -1.68
CLDND1-229	ENST00000513988	IGKV1-39	P01597	117 aa		4.55	□□□□□ -1.68
CLDND1-229	ENST00000513988	IGKV1D-39	P04432	117 aa		4.55	□□□□□ -1.68
CLDND1-229	ENST00000513988	SLC25A5	P05141	298 aa	Known RBP	4.55	□□□□□ -1.68
CLDND1-229	ENST00000513988	SMIM18	P0DKX4	95 aa		4.55	□□□□□ -1.68
CLDND1-229	ENST00000513988	RPS19	P39019	145 aa	Known RBP	4.55	□□□□□ -1.68
CLDND1-229	ENST00000513988	POLR2G	P62487	172 aa	Known RBP eCLIP	4.55	□□□□□ -1.68
CLDND1-229	ENST00000513988	ELOB	Q15370	118 aa		4.55	□□□□□ -1.68
CLDND1-229	ENST00000513988	KRTAP20-1	Q3LI63	56 aa		4.55	□□□□□ -1.68
CLDND1-229	ENST00000513988	C2orf83	Q53S99	150 aa		4.55	□□□□□ -1.68
CLDND1-229	ENST00000513988	ZNF485	Q8NCK3	441 aa		4.55	□□□□□ -1.68
CLDND1-229	ENST00000513988	BEST4	Q8NFU0	473 aa		4.55	□□□□□ -1.68
CLDND1-229	ENST00000513988	OR10G9	Q8NGN4	311 aa		4.55	□□□□□ -1.68
CLDND1-229	ENST00000513988	ODF3	Q96PU9	254 aa		4.55	□□□□□ -1.68
CLDND1-229	ENST00000513988	PRADC1	Q9BSG0	188 aa		4.55	□□□□□ -1.68
CLDND1-229	ENST00000513988	CCDC90B	Q9GZT6	254 aa		4.55	□□□□□ -1.68
CLDND1-229	ENST00000513988	HEYL	Q9NQ87	328 aa	Predicted RBP	4.55	□□□□□ -1.68
CLDND1-229	ENST00000513988	SSR3	Q9UNL2	185 aa		4.55	□□□□□ -1.68
CLDND1-229	ENST00000513988	DIMT1	Q9UNQ2	313 aa	Known RBP	4.55	□□□□□ -1.68
CLDND1-229	ENST00000513988	ORC6	Q9Y5N6	252 aa		4.55	□□□□□ -1.68
CLDND1-229	ENST00000513988	IGKV2-24	A0A0C4DH68	120 aa		4.54	□□□□□ -1.68
CLDND1-229	ENST00000513988	TCRBV3S1	A0A5B6	114 aa		4.54	□□□□□ -1.68
CLDND1-229	ENST00000513988	IRGM	A1A4Y4	181 aa		4.54	□□□□□ -1.68
CLDND1-229	ENST00000513988	SSX5	O60225	188 aa		4.54	□□□□□ -1.68
CLDND1-229	ENST00000513988	MPDU1	O75352	247 aa		4.54	□□□□□ -1.68
CLDND1-229	ENST00000513988	IFNA7	P01567	189 aa		4.54	□□□□□ -1.68
CLDND1-229	ENST00000513988	TCRB	P04435	133 aa		4.54	□□□□□ -1.68
CLDND1-229	ENST00000513988	UCHL1	P09936	223 aa		4.54	□□□□□ -1.68
CLDND1-229	ENST00000513988	S100A7	P31151	101 aa		4.54	□□□□□ -1.68
CLDND1-229	ENST00000513988	UBE2D1	P51668	147 aa		4.54	□□□□□ -1.68
CLDND1-229	ENST00000513988	TAS2R20	P59543	309 aa		4.54	□□□□□ -1.68
CLDND1-229	ENST00000513988	KRTAP4-1	Q9BYQ7	146 aa		4.54	□□□□□ -1.68
CLDND1-229	ENST00000513988	ATG5	Q9H1Y0	275 aa		4.54	□□□□□ -1.68
CLDND1-229	ENST00000513988	SLC45A2	Q9UMX9	530 aa		4.54	□□□□□ -1.68
CLDND1-229	ENST00000513988	IGKV1D-37	A0A075B6S9	117 aa		4.53	□□□□□ -1.68
CLDND1-229	ENST00000513988	PGP	A6NDG6	321 aa		4.53	□□□□□ -1.68
CLDND1-229	ENST00000513988	RPL13A	P40429	203 aa	Known RBP	4.53	□□□□□ -1.68
CLDND1-229	ENST00000513988	BTN1A1	Q13410	526 aa		4.53	□□□□□ -1.68
CLDND1-229	ENST00000513988	C4orf46	Q504U0	113 aa		4.53	□□□□□ -1.68
CLDND1-229	ENST00000513988	SLC25A29	Q8N8R3	303 aa		4.53	□□□□□ -1.68
CLDND1-229	ENST00000513988	FER1L6-AS1	Q8NA97	138 aa		4.53	□□□□□ -1.68
CLDND1-229	ENST00000513988	CLRN3	Q8NCR9	226 aa		4.53	□□□□□ -1.68
CLDND1-229	ENST00000513988	OR4D10	Q8NGI6	311 aa		4.53	□□□□□ -1.68
CLDND1-229	ENST00000513988	RASL10A	Q92737	203 aa		4.53	□□□□□ -1.68
CLDND1-229	ENST00000513988	DIRC1	Q969H9	104 aa		4.53	□□□□□ -1.68
CLDND1-229	ENST00000513988		A0A087WX48	190 aa		4.52	□□□□□ -1.69
CLDND1-229	ENST00000513988	hDV102S1	A0JD36	115 aa		4.52	□□□□□ -1.69
CLDND1-229	ENST00000513988	PRAC2	D3DTV9	90 aa		4.52	□□□□□ -1.69
CLDND1-229	ENST00000513988	GABARAP	H6UMI1	98 aa		4.52	□□□□□ -1.69
CLDND1-229	ENST00000513988	GPR31	O00270	319 aa		4.52	□□□□□ -1.69
CLDND1-229	ENST00000513988	GABARAP	O95166	117 aa		4.52	□□□□□ -1.69
CLDND1-229	ENST00000513988	CRP	P02741	224 aa		4.52	□□□□□ -1.69
CLDND1-229	ENST00000513988	RPL7	P18124	248 aa	Known RBP	4.52	□□□□□ -1.69
CLDND1-229	ENST00000513988	HLA-DMA	P28067	261 aa		4.52	□□□□□ -1.69
CLDND1-229	ENST00000513988	S100G	P29377	79 aa		4.52	□□□□□ -1.69
CLDND1-229	ENST00000513988	RNASE4	P34096	147 aa	Known RBP	4.52	□□□□□ -1.69
CLDND1-229	ENST00000513988	AKR1C2	P52895	323 aa		4.52	□□□□□ -1.69
CLDND1-229	ENST00000513988	RHOH	Q15669	191 aa		4.52	□□□□□ -1.69
CLDND1-229	ENST00000513988	GUK1	Q16774	197 aa		4.52	□□□□□ -1.69
CLDND1-229	ENST00000513988	TRIM16L	Q309B1	348 aa		4.52	□□□□□ -1.69
CLDND1-229	ENST00000513988	PHLDA2	Q53GA4	152 aa		4.52	□□□□□ -1.69
CLDND1-229	ENST00000513988	KCNIP4	Q6PIL6	250 aa		4.52	□□□□□ -1.69
CLDND1-229	ENST00000513988	FAM219A	Q8IW50	185 aa		4.52	□□□□□ -1.69
CLDND1-229	ENST00000513988	TMEM147	Q9BVK8	224 aa		4.52	□□□□□ -1.69
CLDND1-229	ENST00000513988	DIABLO	Q9NR28	239 aa		4.52	□□□□□ -1.69
CLDND1-229	ENST00000513988		V9GY05	133 aa		4.52	□□□□□ -1.69
CLDND1-229	ENST00000513988		A0A087WWC5	75 aa		4.51	□□□□□ -1.69
CLDND1-229	ENST00000513988		A0A087X0K7	114 aa		4.51	□□□□□ -1.69
CLDND1-229	ENST00000513988	CASQ2	O14958	399 aa	Predicted RBP	4.51	□□□□□ -1.69
CLDND1-229	ENST00000513988	CFD	P00746	253 aa	Predicted RBP	4.51	□□□□□ -1.69
CLDND1-229	ENST00000513988	IGKV1-5	P01602	117 aa		4.51	□□□□□ -1.69
CLDND1-229	ENST00000513988	HSMCR30	P0CW71	290 aa		4.51	□□□□□ -1.69
CLDND1-229	ENST00000513988	ORM2	P19652	201 aa		4.51	□□□□□ -1.69
CLDND1-229	ENST00000513988	ZNF138	P52744	262 aa		4.51	□□□□□ -1.69
CLDND1-229	ENST00000513988	SPCS3	P61009	180 aa		4.51	□□□□□ -1.69
CLDND1-229	ENST00000513988	TSPAN5	P62079	268 aa		4.51	□□□□□ -1.69
CLDND1-229	ENST00000513988	COX6A2	Q02221	97 aa		4.51	□□□□□ -1.69

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