RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 COX7A1P24310 79 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 HIST2H2BCQ6DN03 193 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 HIST2H2BDQ6DRA6 164 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 GTSF1Q8WW33 167 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 PLAC8L1A1L4L8 177 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 LTAP01374 205 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 IGLC6P0CF74 106 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 ZFP36L1Q07352 338 aaKnown RBP2.88□□□□□ -1.95
USP53-205ENST00000509769 BEAN1Q3B7T3 259 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 SH2D6Q7Z4S9 175 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 ZIC4Q8N9L1 334 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 TOMM6Q96B49 74 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 SCARF2Q96GP6 870 aaPredicted RBP2.88□□□□□ -1.95
USP53-205ENST00000509769 RCHY1Q96PM5 261 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 AMELYQ99218 206 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 SIRPDQ9H106 197 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 TRBV7-3A0A075B6L6 115 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 SAA2P0DJI9 122 aaPredicted RBP2.88□□□□□ -1.95
USP53-205ENST00000509769 HOXB4P17483 251 aaPredicted RBP2.88□□□□□ -1.95
USP53-205ENST00000509769 WFDC2Q14508 124 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 TRIP6Q15654 476 aaKnown RBP2.88□□□□□ -1.95
USP53-205ENST00000509769 PRSS57Q6UWY2 283 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 ZNF497Q6ZNH5 498 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 FAM19A3Q7Z5A8 133 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 SPACA3Q8IXA5 215 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 DPM3Q9P2X0 92 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 LSM4Q9Y4Z0 139 aaKnown RBP2.88□□□□□ -1.95
USP53-205ENST00000509769 TRAV23DV6A0A075B6W5 121 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 TRAV4A0A0B4J268 109 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 FAM223BA6NKX1 122 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 ZNF883P0CG24 379 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 RNASE4P34096 147 aaKnown RBP2.88□□□□□ -1.95
USP53-205ENST00000509769 DEFB133Q30KQ1 61 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 PLA2G2CQ5R387 149 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 FAM19A5Q7Z5A7 132 aaPredicted RBP2.88□□□□□ -1.95
USP53-205ENST00000509769 APRG1Q8IVJ8 170 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 FAM223AQ8IWN6 122 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 C20orf197Q8N268 126 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 GBF1Q92538 1859 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 ELSPBP1Q96BH3 223 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 USMG5Q96IX5 58 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 TP53TG1Q9Y2A0 90 aa2.88□□□□□ -1.95
USP53-205ENST00000509769 A0A1W2PR77 199 aa2.87□□□□□ -1.95
USP53-205ENST00000509769 FAM90A27PA6NNH2 459 aa2.87□□□□□ -1.95
USP53-205ENST00000509769 IGLV3-21P80748 117 aaPredicted RBP2.87□□□□□ -1.95
USP53-205ENST00000509769 PMS2CLQ68D20 193 aa2.87□□□□□ -1.95
USP53-205ENST00000509769 ZCCHC24Q8N2G6 241 aaKnown RBP2.87□□□□□ -1.95
USP53-205ENST00000509769 TMEM254Q8TBM7 123 aa2.87□□□□□ -1.95
USP53-205ENST00000509769 COX14Q96I36 57 aa2.87□□□□□ -1.95
USP53-205ENST00000509769 SHANK2-AS3Q9BTD1 123 aa2.87□□□□□ -1.95
USP53-205ENST00000509769 MRPL35Q9NZE8 188 aaKnown RBP2.87□□□□□ -1.95
USP53-205ENST00000509769 CACNA1BQ00975 2339 aa2.87□□□□□ -1.95
USP53-205ENST00000509769 CD55P08174 381 aa2.87□□□□□ -1.95
USP53-205ENST00000509769 STHQ8IWL8 128 aa2.87□□□□□ -1.95
USP53-205ENST00000509769 DYNAPQ8N1N2 210 aa2.87□□□□□ -1.95
USP53-205ENST00000509769 LINC01587Q99440 93 aa2.87□□□□□ -1.95
USP53-205ENST00000509769 CHCHD5Q9BSY4 110 aa2.87□□□□□ -1.95
USP53-205ENST00000509769 MRPL36Q9P0J6 103 aaKnown RBP2.87□□□□□ -1.95
USP53-205ENST00000509769 LMO7DNF2Z398 122 aa2.87□□□□□ -1.95
USP53-205ENST00000509769 K7ESM1 405 aa2.87□□□□□ -1.95
USP53-205ENST00000509769 M0R1W7 72 aa2.87□□□□□ -1.95
USP53-205ENST00000509769 MT-ATP8P03928 68 aa2.87□□□□□ -1.95
USP53-205ENST00000509769 ZFP36L2P47974 494 aaKnown RBP2.87□□□□□ -1.95
USP53-205ENST00000509769 LPAL2Q16609 132 aa2.87□□□□□ -1.95
USP53-205ENST00000509769 LINC00114Q6XXX2 140 aa2.87□□□□□ -1.95
USP53-205ENST00000509769 LHFPL6Q9Y693 200 aa2.87□□□□□ -1.95
USP53-205ENST00000509769 C12orf77C9JDV5 145 aa2.86□□□□□ -1.95
USP53-205ENST00000509769 NBR2O15453 112 aa2.86□□□□□ -1.95
USP53-205ENST00000509769 VWC2Q2TAL6 325 aa2.86□□□□□ -1.95
USP53-205ENST00000509769 MINOS1Q5TGZ0 78 aa2.86□□□□□ -1.95
USP53-205ENST00000509769 NEU4Q8WWR8 484 aaPredicted RBP2.86□□□□□ -1.95
USP53-205ENST00000509769 SPRY4Q9C004 299 aa2.86□□□□□ -1.95
USP53-205ENST00000509769 FOXQ1Q9C009 403 aa2.86□□□□□ -1.95
USP53-205ENST00000509769 TMEM133Q9H2Q1 129 aa2.86□□□□□ -1.95
USP53-205ENST00000509769 MINOS1-NBL1R4GNA1 71 aa2.86□□□□□ -1.95
USP53-205ENST00000509769 TRGV2A0A075B6R0 118 aa2.86□□□□□ -1.95
USP53-205ENST00000509769 TRGV4A0A0C4DH28 118 aa2.86□□□□□ -1.95
USP53-205ENST00000509769 LINC00694P0DN24 101 aa2.86□□□□□ -1.95
USP53-205ENST00000509769 NTF4P34130 210 aa2.86□□□□□ -1.95
USP53-205ENST00000509769 ODF1Q14990 250 aa2.86□□□□□ -1.95
USP53-205ENST00000509769 HCP5Q6MZN7 132 aa2.86□□□□□ -1.95
USP53-205ENST00000509769 VN1R4Q7Z5H5 301 aa2.86□□□□□ -1.95
USP53-205ENST00000509769 NDUFA11Q86Y39 141 aa2.86□□□□□ -1.95
USP53-205ENST00000509769 WFDC3Q8IUB2 231 aa2.86□□□□□ -1.95
USP53-205ENST00000509769 GAFA1Q96PS6 74 aa2.86□□□□□ -1.95
USP53-205ENST00000509769 PTPRFP10586 1907 aa2.86□□□□□ -1.95
USP53-205ENST00000509769 MYO5AQ9Y4I1 1855 aaKnown RBP2.86□□□□□ -1.95
USP53-205ENST00000509769 ZNF318Q5VUA4 2279 aa2.86□□□□□ -1.95
USP53-205ENST00000509769 HCRTO43612 131 aa2.86□□□□□ -1.95
USP53-205ENST00000509769 CBLN3Q6UW01 205 aa2.86□□□□□ -1.95
USP53-205ENST00000509769 CLUHP3Q96NS8 147 aa2.86□□□□□ -1.95
USP53-205ENST00000509769 PRSS22Q9GZN4 317 aa2.86□□□□□ -1.95
USP53-205ENST00000509769 FNDC1Q4ZHG4 1894 aaPredicted RBP2.86□□□□□ -1.95
USP53-205ENST00000509769 LAMA4Q16363 1823 aa2.86□□□□□ -1.95
USP53-205ENST00000509769 TRBV27A0A0K0K1C4 114 aa2.86□□□□□ -1.95
USP53-205ENST00000509769 A0A1B0GW54 56 aa2.86□□□□□ -1.95
USP53-205ENST00000509769 C17orf98A8MV24 154 aa2.86□□□□□ -1.95
USP53-205ENST00000509769 B9A039 149 aa2.86□□□□□ -1.95
USP53-205ENST00000509769 CCDC179H3BU77 68 aa2.86□□□□□ -1.95
USP53-205ENST00000509769 CRYGAP11844 174 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms