RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 CLPSL1A2RUU4 121 aa8.31□□□□□ -1.08
USP4-214ENST00000491791 RBAKDNA6NC62 111 aa8.31□□□□□ -1.08
USP4-214ENST00000491791 LINC01548A6NM66 108 aa8.31□□□□□ -1.08
USP4-214ENST00000491791 A8MWP6 167 aa8.31□□□□□ -1.08
USP4-214ENST00000491791 BUB3O43684 328 aa8.31□□□□□ -1.08
USP4-214ENST00000491791 CLEC3BP05452 202 aa8.31□□□□□ -1.08
USP4-214ENST00000491791 IGHV4-38-2P0DP08 117 aa8.31□□□□□ -1.08
USP4-214ENST00000491791 GZMBP10144 247 aa8.31□□□□□ -1.08
USP4-214ENST00000491791 PPIFP30405 207 aaKnown RBP8.31□□□□□ -1.08
USP4-214ENST00000491791 CSN1S1P47710 185 aa8.31□□□□□ -1.08
USP4-214ENST00000491791 SRSF2Q01130 221 aaKnown RBP8.31□□□□□ -1.08
USP4-214ENST00000491791 RELQ04864 619 aaPredicted RBP8.31□□□□□ -1.08
USP4-214ENST00000491791 KLF5Q13887 457 aaPredicted RBP8.31□□□□□ -1.08
USP4-214ENST00000491791 ECSCRQ19T08 205 aa8.31□□□□□ -1.08
USP4-214ENST00000491791 PDZD11Q5EBL8 140 aa8.31□□□□□ -1.08
USP4-214ENST00000491791 SAPCD1Q5SSQ6 148 aa8.31□□□□□ -1.08
USP4-214ENST00000491791 CYB5R2Q6BCY4 276 aa8.31□□□□□ -1.08
USP4-214ENST00000491791 RBPMS2Q6ZRY4 209 aaKnown RBP8.31□□□□□ -1.08
USP4-214ENST00000491791 GOLT1AQ6ZVE7 132 aa8.31□□□□□ -1.08
USP4-214ENST00000491791 PRIMA1Q86XR5 153 aa8.31□□□□□ -1.08
USP4-214ENST00000491791 MRPL53Q96EL3 112 aaKnown RBP8.31□□□□□ -1.08
USP4-214ENST00000491791 USMG5Q96IX5 58 aa8.31□□□□□ -1.08
USP4-214ENST00000491791 CLEC5AQ9NY25 188 aa8.31□□□□□ -1.08
USP4-214ENST00000491791 SMAD5-AS1Q9Y6J3 95 aa8.31□□□□□ -1.08
USP4-214ENST00000491791 ZANQ9Y493 2812 aa8.3□□□□□ -1.08
USP4-214ENST00000491791 TRAV40A0A0B4J280 105 aa8.3□□□□□ -1.08
USP4-214ENST00000491791 A0A1B0GW15 77 aa8.3□□□□□ -1.08
USP4-214ENST00000491791 PCP4L1A6NKN8 68 aa8.3□□□□□ -1.08
USP4-214ENST00000491791 HIGD1CA8MV81 97 aa8.3□□□□□ -1.08
USP4-214ENST00000491791 INAFM1C9JVW0 142 aa8.3□□□□□ -1.08
USP4-214ENST00000491791 G3V318 75 aa8.3□□□□□ -1.08
USP4-214ENST00000491791 H3BTX0 84 aa8.3□□□□□ -1.08
USP4-214ENST00000491791 HAX1O00165 279 aa8.3□□□□□ -1.08
USP4-214ENST00000491791 CA1P00915 261 aaPredicted RBP8.3□□□□□ -1.08
USP4-214ENST00000491791 IGHG4P01861 327 aa8.3□□□□□ -1.08
USP4-214ENST00000491791 APCSP02743 223 aa8.3□□□□□ -1.08
USP4-214ENST00000491791 APOHP02749 345 aaPredicted RBP8.3□□□□□ -1.08
USP4-214ENST00000491791 SNRPCP09234 159 aaKnown RBP8.3□□□□□ -1.08
USP4-214ENST00000491791 RAB4BP61018 213 aa8.3□□□□□ -1.08
USP4-214ENST00000491791 ATP5G2Q06055 141 aa8.3□□□□□ -1.08
USP4-214ENST00000491791 LOXL1Q08397 574 aaPredicted RBP8.3□□□□□ -1.08
USP4-214ENST00000491791 Q6AWC8 147 aa8.3□□□□□ -1.08
USP4-214ENST00000491791 TMEM256Q8N2U0 113 aa8.3□□□□□ -1.08
USP4-214ENST00000491791 CIARTQ8N365 385 aaPredicted RBP8.3□□□□□ -1.08
USP4-214ENST00000491791 LINC01356Q8N9X3 169 aa8.3□□□□□ -1.08
USP4-214ENST00000491791 GTSF1Q8WW33 167 aa8.3□□□□□ -1.08
USP4-214ENST00000491791 DAZAP1Q96EP5 407 aaKnown RBP8.3□□□□□ -1.08
USP4-214ENST00000491791 MDFIQ99750 246 aa8.3□□□□□ -1.08
USP4-214ENST00000491791 SLC50A1Q9BRV3 221 aa8.3□□□□□ -1.08
USP4-214ENST00000491791 PPP1R14DQ9NXH3 145 aa8.3□□□□□ -1.08
USP4-214ENST00000491791 S4R3C0 116 aa8.3□□□□□ -1.08
USP4-214ENST00000491791 STAB1Q9NY15 2570 aa8.3□□□□□ -1.08
USP4-214ENST00000491791 TMEM89A2RUT3 159 aa8.29□□□□□ -1.08
USP4-214ENST00000491791 NUPR1O60356 82 aa8.29□□□□□ -1.08
USP4-214ENST00000491791 FSHBP01225 129 aa8.29□□□□□ -1.08
USP4-214ENST00000491791 IGLV1-40P01703 118 aa8.29□□□□□ -1.08
USP4-214ENST00000491791 GPR183P32249 361 aa8.29□□□□□ -1.08
USP4-214ENST00000491791 TCL1AP56279 114 aa8.29□□□□□ -1.08
USP4-214ENST00000491791 TPPP2P59282 170 aa8.29□□□□□ -1.08
USP4-214ENST00000491791 CTAG1AP78358 180 aa8.29□□□□□ -1.08
USP4-214ENST00000491791 CFHR3Q02985 330 aa8.29□□□□□ -1.08
USP4-214ENST00000491791 FAM209BQ5JX69 171 aa8.29□□□□□ -1.08
USP4-214ENST00000491791 GDF5OSQ5U4N7 250 aa8.29□□□□□ -1.08
USP4-214ENST00000491791 PRR27Q6MZM9 219 aa8.29□□□□□ -1.08
USP4-214ENST00000491791 MRPL54Q6P161 138 aaKnown RBP8.29□□□□□ -1.08
USP4-214ENST00000491791 C9orf139Q6ZV77 190 aa8.29□□□□□ -1.08
USP4-214ENST00000491791 PRNTQ86SH4 94 aa8.29□□□□□ -1.08
USP4-214ENST00000491791 GNB4Q9HAV0 340 aa8.29□□□□□ -1.08
USP4-214ENST00000491791 HIF1ANQ9NWT6 349 aa8.29□□□□□ -1.08
USP4-214ENST00000491791 ABCA1O95477 2261 aa8.28□□□□□ -1.08
USP4-214ENST00000491791 TRAV8-1A0A0A6YYK1 113 aa8.28□□□□□ -1.08
USP4-214ENST00000491791 SERF1AO75920 110 aa8.28□□□□□ -1.08
USP4-214ENST00000491791 CRIP1P50238 77 aa8.28□□□□□ -1.08
USP4-214ENST00000491791 HBBP68871 147 aa8.28□□□□□ -1.08
USP4-214ENST00000491791 FAM162BQ5T6X4 162 aa8.28□□□□□ -1.08
USP4-214ENST00000491791 BRD3OSQ6XYD6 125 aa8.28□□□□□ -1.08
USP4-214ENST00000491791 ZC2HC1AQ96GY0 325 aa8.28□□□□□ -1.08
USP4-214ENST00000491791 RPH3ALQ9UNE2 315 aa8.28□□□□□ -1.08
USP4-214ENST00000491791 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.27□□□□□ -1.09
USP4-214ENST00000491791 GRIFINA4D1Z8 144 aa8.27□□□□□ -1.09
USP4-214ENST00000491791 SH2D7A6NKC9 451 aaPredicted RBP8.27□□□□□ -1.09
USP4-214ENST00000491791 M0R3E3 92 aa8.27□□□□□ -1.09
USP4-214ENST00000491791 CHEK1O14757 476 aa8.27□□□□□ -1.09
USP4-214ENST00000491791 IGHV3-23P01764 117 aa8.27□□□□□ -1.09
USP4-214ENST00000491791 PKIAP61925 76 aa8.27□□□□□ -1.09
USP4-214ENST00000491791 SLAQ13239 276 aa8.27□□□□□ -1.09
USP4-214ENST00000491791 IQCJQ1A5X6 159 aa8.27□□□□□ -1.09
USP4-214ENST00000491791 CLEC19AQ6UXS0 136 aa8.27□□□□□ -1.09
USP4-214ENST00000491791 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.27□□□□□ -1.09
USP4-214ENST00000491791 TMEM219Q86XT9 240 aa8.27□□□□□ -1.09
USP4-214ENST00000491791 BAGE3Q86Y29 109 aa8.27□□□□□ -1.09
USP4-214ENST00000491791 SGK494Q96LW2 274 aa8.27□□□□□ -1.09
USP4-214ENST00000491791 PRR25Q96S07 402 aa8.27□□□□□ -1.09
USP4-214ENST00000491791 METTL26Q96S19 204 aa8.27□□□□□ -1.09
USP4-214ENST00000491791 ALKBH7Q9BT30 221 aaPredicted RBP8.27□□□□□ -1.09
USP4-214ENST00000491791 NDFIP1Q9BT67 221 aa8.27□□□□□ -1.09
USP4-214ENST00000491791 WNK2Q9Y3S1 2297 aa8.27□□□□□ -1.09
USP4-214ENST00000491791 H3BUX3 64 aa8.26□□□□□ -1.09
USP4-214ENST00000491791 NDUFA4O00483 81 aa8.26□□□□□ -1.09
USP4-214ENST00000491791 CRLF1O75462 422 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms