RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 ANKRD17O75179 2603 aaKnown RBP0.26□□□□□ -2.37
SCN1A-206ENST00000491429 JMJD1CQ15652 2540 aa0.25□□□□□ -2.37
SCN1A-206ENST00000491429 TET1Q8NFU7 2136 aa0.25□□□□□ -2.37
SCN1A-206ENST00000491429 SIP14410 1827 aa0.25□□□□□ -2.37
SCN1A-206ENST00000491429 UHRF1BP1Q6BDS2 1440 aa0.25□□□□□ -2.37
SCN1A-206ENST00000491429 LYRM1O43325 122 aa0.25□□□□□ -2.37
SCN1A-206ENST00000491429 MIR22HGQ0VDD5 57 aa0.25□□□□□ -2.37
SCN1A-206ENST00000491429 SH3BGRL3Q9H299 93 aa0.25□□□□□ -2.37
SCN1A-206ENST00000491429 PLAC8Q9NZF1 115 aa0.25□□□□□ -2.37
SCN1A-206ENST00000491429 BOKQ9UMX3 212 aaPredicted RBP0.25□□□□□ -2.37
SCN1A-206ENST00000491429 BIRC6Q9NR09 4857 aa0.25□□□□□ -2.37
SCN1A-206ENST00000491429 NUP98P52948 1817 aa0.24□□□□□ -2.37
SCN1A-206ENST00000491429 PIAS1O75925 651 aa0.24□□□□□ -2.37
SCN1A-206ENST00000491429 KRTAP2-3P0C7H8 128 aa0.24□□□□□ -2.37
SCN1A-206ENST00000491429 HBBP68871 147 aa0.24□□□□□ -2.37
SCN1A-206ENST00000491429 VMA21Q3ZAQ7 101 aa0.24□□□□□ -2.37
SCN1A-206ENST00000491429 C1orf140Q5VVS0 124 aa0.24□□□□□ -2.37
SCN1A-206ENST00000491429 FOXI2Q6ZQN5 318 aa0.24□□□□□ -2.37
SCN1A-206ENST00000491429 Q6ZQY7 126 aa0.24□□□□□ -2.37
SCN1A-206ENST00000491429 Q6ZS92 163 aa0.24□□□□□ -2.37
SCN1A-206ENST00000491429 ATOH7Q8N100 152 aa0.24□□□□□ -2.37
SCN1A-206ENST00000491429 FAM216BQ8N7L0 139 aa0.24□□□□□ -2.37
SCN1A-206ENST00000491429 OR13C6PQ8NH95 151 aa0.24□□□□□ -2.37
SCN1A-206ENST00000491429 KRTAP2-4Q9BYR9 128 aa0.24□□□□□ -2.37
SCN1A-206ENST00000491429 KRTAP2-1Q9BYU5 128 aa0.24□□□□□ -2.37
SCN1A-206ENST00000491429 MYO18AQ92614 2054 aaKnown RBP0.24□□□□□ -2.37
SCN1A-206ENST00000491429 NAV2Q8IVL1 2488 aa0.24□□□□□ -2.37
SCN1A-206ENST00000491429 RNF213Q63HN8 5207 aa0.24□□□□□ -2.37
SCN1A-206ENST00000491429 HMCN2Q8NDA2 5059 aa0.23□□□□□ -2.37
SCN1A-206ENST00000491429 ERBINQ96RT1 1412 aa0.23□□□□□ -2.37
SCN1A-206ENST00000491429 TRAV5A0A0B4J249 113 aa0.23□□□□□ -2.37
SCN1A-206ENST00000491429 GPR31O00270 319 aa0.23□□□□□ -2.37
SCN1A-206ENST00000491429 IFNA1P01562 189 aa0.23□□□□□ -2.37
SCN1A-206ENST00000491429 MT-ND6P03923 174 aa0.23□□□□□ -2.37
SCN1A-206ENST00000491429 MRPS15P82914 257 aaKnown RBP0.23□□□□□ -2.37
SCN1A-206ENST00000491429 DIAPH2-AS1Q14236 149 aa0.23□□□□□ -2.37
SCN1A-206ENST00000491429 TSKUQ8WUA8 353 aa0.23□□□□□ -2.37
SCN1A-206ENST00000491429 MALSU1Q96EH3 234 aa0.23□□□□□ -2.37
SCN1A-206ENST00000491429 GINS3Q9BRX5 216 aa0.23□□□□□ -2.37
SCN1A-206ENST00000491429 FAM103A1Q9BTL3 118 aaKnown RBP0.23□□□□□ -2.37
SCN1A-206ENST00000491429 COL24A1Q17RW2 1714 aa0.23□□□□□ -2.37
SCN1A-206ENST00000491429 CAMSAP1Q5T5Y3 1602 aa0.23□□□□□ -2.37
SCN1A-206ENST00000491429 PIEZO1Q92508 2521 aa0.23□□□□□ -2.37
SCN1A-206ENST00000491429 NCOR2Q9Y618 2525 aa0.23□□□□□ -2.37
SCN1A-206ENST00000491429 CHD3Q12873 2000 aaKnown RBP0.23□□□□□ -2.37
SCN1A-206ENST00000491429 CREBBPQ92793 2442 aa0.23□□□□□ -2.37
SCN1A-206ENST00000491429 DOCK4Q8N1I0 1966 aa0.23□□□□□ -2.37
SCN1A-206ENST00000491429 CCDC168Q8NDH2 2452 aa0.22□□□□□ -2.37
SCN1A-206ENST00000491429 SONP18583 2426 aaKnown RBP0.22□□□□□ -2.37
SCN1A-206ENST00000491429 MFSD11O43934 449 aa0.22□□□□□ -2.37
SCN1A-206ENST00000491429 CSN2P05814 226 aa0.22□□□□□ -2.37
SCN1A-206ENST00000491429 RPL37AP61513 92 aaKnown RBP0.22□□□□□ -2.37
SCN1A-206ENST00000491429 ARF6P62330 175 aa0.22□□□□□ -2.37
SCN1A-206ENST00000491429 RPL19P84098 196 aaKnown RBP0.22□□□□□ -2.37
SCN1A-206ENST00000491429 FKBP1CQ5VVH2 108 aa0.22□□□□□ -2.37
SCN1A-206ENST00000491429 CROCCP2Q86T23 111 aa0.22□□□□□ -2.37
SCN1A-206ENST00000491429 SMIM20Q8N5G0 67 aa0.22□□□□□ -2.37
SCN1A-206ENST00000491429 PLAC4Q8WY50 150 aa0.22□□□□□ -2.37
SCN1A-206ENST00000491429 CCL19Q99731 98 aa0.22□□□□□ -2.37
SCN1A-206ENST00000491429 CST11Q9H112 138 aa0.22□□□□□ -2.37
SCN1A-206ENST00000491429 JPT1Q9UK76 154 aa0.22□□□□□ -2.37
SCN1A-206ENST00000491429 MAST4O15021 2626 aa0.22□□□□□ -2.37
SCN1A-206ENST00000491429 HECTD1Q9ULT8 2610 aa0.22□□□□□ -2.37
SCN1A-206ENST00000491429 PTPRFP10586 1907 aa0.21□□□□□ -2.38
SCN1A-206ENST00000491429 TENM4Q6N022 2769 aa0.21□□□□□ -2.38
SCN1A-206ENST00000491429 CST7O76096 145 aa0.21□□□□□ -2.38
SCN1A-206ENST00000491429 IGHV3-33P01772 117 aa0.21□□□□□ -2.38
SCN1A-206ENST00000491429 RPL35P42766 123 aaKnown RBP0.21□□□□□ -2.38
SCN1A-206ENST00000491429 FXYD6P3P58550 94 aa0.21□□□□□ -2.38
SCN1A-206ENST00000491429 GNG3P63215 75 aa0.21□□□□□ -2.38
SCN1A-206ENST00000491429 BASP1P80723 227 aaKnown RBP0.21□□□□□ -2.38
SCN1A-206ENST00000491429 RTL8BQ17RB0 113 aa0.21□□□□□ -2.38
SCN1A-206ENST00000491429 LINC00299Q6ZSB3 139 aa0.21□□□□□ -2.38
SCN1A-206ENST00000491429 ZCCHC23Q6ZST2 131 aa0.21□□□□□ -2.38
SCN1A-206ENST00000491429 NEK7Q8TDX7 302 aa0.21□□□□□ -2.38
SCN1A-206ENST00000491429 RTL8AQ9BWD3 113 aa0.21□□□□□ -2.38
SCN1A-206ENST00000491429 OR2H1Q9GZK4 316 aa0.21□□□□□ -2.38
SCN1A-206ENST00000491429 STOML2Q9UJZ1 356 aa0.21□□□□□ -2.38
SCN1A-206ENST00000491429 TPRKBQ9Y3C4 175 aa0.21□□□□□ -2.38
SCN1A-206ENST00000491429 USP9XQ93008 2570 aaPredicted RBP0.21□□□□□ -2.38
SCN1A-206ENST00000491429 APCP25054 2843 aa0.21□□□□□ -2.38
SCN1A-206ENST00000491429 FASNP49327 2511 aaKnown RBP0.21□□□□□ -2.38
SCN1A-206ENST00000491429 CD109Q6YHK3 1445 aa0.21□□□□□ -2.38
SCN1A-206ENST00000491429 MUC4Q99102 2169 aa0.21□□□□□ -2.38
SCN1A-206ENST00000491429 HIVEP3Q5T1R4 2406 aa0.21□□□□□ -2.38
SCN1A-206ENST00000491429 SETXQ7Z333 2677 aaKnown RBP0.2□□□□□ -2.38
SCN1A-206ENST00000491429 FLNAP21333 2647 aaKnown RBP0.2□□□□□ -2.38
SCN1A-206ENST00000491429 ABCA12Q86UK0 2595 aa0.2□□□□□ -2.38
SCN1A-206ENST00000491429 STAB2Q8WWQ8 2551 aa0.2□□□□□ -2.38
SCN1A-206ENST00000491429 KCPQ6ZWJ8 1503 aa0.2□□□□□ -2.38
SCN1A-206ENST00000491429 CCL4P13236 92 aa0.2□□□□□ -2.38
SCN1A-206ENST00000491429 GLRXP35754 106 aa0.2□□□□□ -2.38
SCN1A-206ENST00000491429 TAS2R41P59536 307 aa0.2□□□□□ -2.38
SCN1A-206ENST00000491429 NEDD8Q15843 81 aa0.2□□□□□ -2.38
SCN1A-206ENST00000491429 LTC4SQ16873 150 aa0.2□□□□□ -2.38
SCN1A-206ENST00000491429 CASC2Q6XLA1 102 aa0.2□□□□□ -2.38
SCN1A-206ENST00000491429 PHF5AQ7RTV0 110 aaKnown RBP0.2□□□□□ -2.38
SCN1A-206ENST00000491429 NUP35Q8NFH5 326 aa0.2□□□□□ -2.38
SCN1A-206ENST00000491429 RMND5BQ96G75 393 aaPredicted RBP0.2□□□□□ -2.38
SCN1A-206ENST00000491429 NAT8BQ9UHF3 227 aa0.2□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms