RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 LINC00032P0C843 101 aa2.78□□□□□ -1.96
VPS41-212ENST00000482217 SNCAP37840 140 aa2.78□□□□□ -1.96
VPS41-212ENST00000482217 TIMM10P62072 90 aa2.78□□□□□ -1.96
VPS41-212ENST00000482217 BLCAPP62952 87 aa2.78□□□□□ -1.96
VPS41-212ENST00000482217 CDK5R1Q15078 307 aa2.78□□□□□ -1.96
VPS41-212ENST00000482217 LINC01545Q5VT33 79 aa2.78□□□□□ -1.96
VPS41-212ENST00000482217 EIF5AL1Q6IS14 154 aaKnown RBP2.78□□□□□ -1.96
VPS41-212ENST00000482217 NTM-AS1Q6ZSK4 140 aa2.78□□□□□ -1.96
VPS41-212ENST00000482217 MIR17HGQ75NE6 70 aa2.78□□□□□ -1.96
VPS41-212ENST00000482217 AMN1Q8IY45 258 aa2.78□□□□□ -1.96
VPS41-212ENST00000482217 POM121L12Q8N7R1 296 aa2.78□□□□□ -1.96
VPS41-212ENST00000482217 APCDD1LQ8NCL9 501 aa2.78□□□□□ -1.96
VPS41-212ENST00000482217 AQP10Q96PS8 301 aa2.78□□□□□ -1.96
VPS41-212ENST00000482217 S100A13Q99584 98 aa2.78□□□□□ -1.96
VPS41-212ENST00000482217 UPK3BQ9BT76 320 aa2.78□□□□□ -1.96
VPS41-212ENST00000482217 TPRKBQ9Y3C4 175 aa2.78□□□□□ -1.96
VPS41-212ENST00000482217 AP4S1Q9Y587 144 aa2.78□□□□□ -1.96
VPS41-212ENST00000482217 MICAL3Q7RTP6 2002 aa2.78□□□□□ -1.96
VPS41-212ENST00000482217 RTEL1-TNFRSF6BF6WH68 1400 aa2.77□□□□□ -1.97
VPS41-212ENST00000482217 PPRC1Q5VV67 1664 aaKnown RBP2.77□□□□□ -1.97
VPS41-212ENST00000482217 IGHV3-21A0A0B4J1V1 117 aa2.77□□□□□ -1.97
VPS41-212ENST00000482217 A0A1B0GW54 56 aa2.77□□□□□ -1.97
VPS41-212ENST00000482217 A6NN06 94 aa2.77□□□□□ -1.97
VPS41-212ENST00000482217 A8MWL6 223 aa2.77□□□□□ -1.97
VPS41-212ENST00000482217 LECT2O14960 151 aa2.77□□□□□ -1.97
VPS41-212ENST00000482217 SFT2D2O95562 160 aa2.77□□□□□ -1.97
VPS41-212ENST00000482217 IGHV3-7P01780 117 aa2.77□□□□□ -1.97
VPS41-212ENST00000482217 GYPBP06028 91 aa2.77□□□□□ -1.97
VPS41-212ENST00000482217 GIG44P09565 113 aaPredicted RBP2.77□□□□□ -1.97
VPS41-212ENST00000482217 FUSP35637 526 aaKnown RBP eCLIP2.77□□□□□ -1.97
VPS41-212ENST00000482217 RPL27AP46776 148 aaKnown RBP2.77□□□□□ -1.97
VPS41-212ENST00000482217 UBE2AP49459 152 aa2.77□□□□□ -1.97
VPS41-212ENST00000482217 PCBD1P61457 104 aa2.77□□□□□ -1.97
VPS41-212ENST00000482217 HIST1H4AP62805 103 aaKnown RBP2.77□□□□□ -1.97
VPS41-212ENST00000482217 DYNLT1P63172 113 aa2.77□□□□□ -1.97
VPS41-212ENST00000482217 GNGT1P63211 74 aa2.77□□□□□ -1.97
VPS41-212ENST00000482217 C10orf91Q5T1B1 145 aa2.77□□□□□ -1.97
VPS41-212ENST00000482217 ZNF660Q6AZW8 331 aaPredicted RBP2.77□□□□□ -1.97
VPS41-212ENST00000482217 NOXRED1Q6NXP6 359 aa2.77□□□□□ -1.97
VPS41-212ENST00000482217 Q6P435 159 aa2.77□□□□□ -1.97
VPS41-212ENST00000482217 C16orf47Q6ZP98 133 aaPredicted RBP2.77□□□□□ -1.97
VPS41-212ENST00000482217 LINC00299Q6ZSB3 139 aa2.77□□□□□ -1.97
VPS41-212ENST00000482217 CAMK2N1Q7Z7J9 78 aa2.77□□□□□ -1.97
VPS41-212ENST00000482217 SIGLECL1Q8N7X8 197 aa2.77□□□□□ -1.97
VPS41-212ENST00000482217 YPEL2Q96QA6 119 aa2.77□□□□□ -1.97
VPS41-212ENST00000482217 C20orf78Q9BR46 151 aa2.77□□□□□ -1.97
VPS41-212ENST00000482217 GABARAPL1Q9H0R8 117 aa2.77□□□□□ -1.97
VPS41-212ENST00000482217 INO80Q9ULG1 1556 aaPredicted RBP2.77□□□□□ -1.97
VPS41-212ENST00000482217 CABIN1Q9Y6J0 2220 aa2.77□□□□□ -1.97
VPS41-212ENST00000482217 ADGRB3O60242 1522 aa2.77□□□□□ -1.97
VPS41-212ENST00000482217 MARF1Q9Y4F3 1742 aaKnown RBP2.76□□□□□ -1.97
VPS41-212ENST00000482217 TET3O43151 1660 aa2.76□□□□□ -1.97
VPS41-212ENST00000482217 IQGAP3Q86VI3 1631 aa2.76□□□□□ -1.97
VPS41-212ENST00000482217 NYNRINQ9P2P1 1898 aaKnown RBP2.76□□□□□ -1.97
VPS41-212ENST00000482217 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.76□□□□□ -1.97
VPS41-212ENST00000482217 BPY2O14599 106 aa2.76□□□□□ -1.97
VPS41-212ENST00000482217 INSP01308 110 aa2.76□□□□□ -1.97
VPS41-212ENST00000482217 HLA-DQA1P01909 254 aa2.76□□□□□ -1.97
VPS41-212ENST00000482217 SHBGP04278 402 aa2.76□□□□□ -1.97
VPS41-212ENST00000482217 IGHV1-8P0DP01 117 aa2.76□□□□□ -1.97
VPS41-212ENST00000482217 IGHV3-30-3P0DP02 117 aa2.76□□□□□ -1.97
VPS41-212ENST00000482217 CCL4P13236 92 aa2.76□□□□□ -1.97
VPS41-212ENST00000482217 NPC2P61916 151 aa2.76□□□□□ -1.97
VPS41-212ENST00000482217 HIGD2BQ4VC39 106 aa2.76□□□□□ -1.97
VPS41-212ENST00000482217 FAM78AQ5JUQ0 283 aa2.76□□□□□ -1.97
VPS41-212ENST00000482217 ZNF525Q8N782 197 aa2.76□□□□□ -1.97
VPS41-212ENST00000482217 CNEP1R1Q8N9A8 125 aa2.76□□□□□ -1.97
VPS41-212ENST00000482217 KLHL30-AS1Q8NEE0 82 aa2.76□□□□□ -1.97
VPS41-212ENST00000482217 COPS9Q8WXC6 57 aa2.76□□□□□ -1.97
VPS41-212ENST00000482217 RAB37Q96AX2 223 aa2.76□□□□□ -1.97
VPS41-212ENST00000482217 ZNF581Q9P0T4 197 aa2.76□□□□□ -1.97
VPS41-212ENST00000482217 UQCR10Q9UDW1 63 aa2.76□□□□□ -1.97
VPS41-212ENST00000482217 PXDNLA1KZ92 1463 aa2.76□□□□□ -1.97
VPS41-212ENST00000482217 TRPM7Q96QT4 1865 aa2.75□□□□□ -1.97
VPS41-212ENST00000482217 NUP214P35658 2090 aaPredicted RBP2.75□□□□□ -1.97
VPS41-212ENST00000482217 MAP2P11137 1827 aaKnown RBP2.75□□□□□ -1.97
VPS41-212ENST00000482217 TMEM223A0PJW6 202 aa2.75□□□□□ -1.97
VPS41-212ENST00000482217 B4DSR2 109 aa2.75□□□□□ -1.97
VPS41-212ENST00000482217 GNGT2O14610 69 aa2.75□□□□□ -1.97
VPS41-212ENST00000482217 CYB5AP00167 134 aa2.75□□□□□ -1.97
VPS41-212ENST00000482217 COX7CP15954 63 aa2.75□□□□□ -1.97
VPS41-212ENST00000482217 HINT1P49773 126 aaPredicted RBP2.75□□□□□ -1.97
VPS41-212ENST00000482217 SUPT4H1P63272 117 aaKnown RBP2.75□□□□□ -1.97
VPS41-212ENST00000482217 CIRBPQ14011 172 aaKnown RBP2.75□□□□□ -1.97
VPS41-212ENST00000482217 INSL4Q14641 139 aa2.75□□□□□ -1.97
VPS41-212ENST00000482217 OR5AS1Q8N127 324 aa2.75□□□□□ -1.97
VPS41-212ENST00000482217 FAM216BQ8N7L0 139 aa2.75□□□□□ -1.97
VPS41-212ENST00000482217 ATP6V0E2Q8NHE4 81 aa2.75□□□□□ -1.97
VPS41-212ENST00000482217 PFN4Q8NHR9 129 aa2.75□□□□□ -1.97
VPS41-212ENST00000482217 S100ZQ8WXG8 99 aa2.75□□□□□ -1.97
VPS41-212ENST00000482217 CLEC2BQ92478 149 aa2.75□□□□□ -1.97
VPS41-212ENST00000482217 FGF13Q92913 245 aa2.75□□□□□ -1.97
VPS41-212ENST00000482217 MCEEQ96PE7 176 aa2.75□□□□□ -1.97
VPS41-212ENST00000482217 NABP2Q9BQ15 211 aa2.75□□□□□ -1.97
VPS41-212ENST00000482217 CHCHD7Q9BUK0 85 aa2.75□□□□□ -1.97
VPS41-212ENST00000482217 DPH3P1Q9H4G8 78 aa2.75□□□□□ -1.97
VPS41-212ENST00000482217 WDR90Q96KV7 1748 aa2.75□□□□□ -1.97
VPS41-212ENST00000482217 ABCA7Q8IZY2 2146 aa2.75□□□□□ -1.97
VPS41-212ENST00000482217 MROH1Q8NDA8 1641 aa2.75□□□□□ -1.97
VPS41-212ENST00000482217 EPRSP07814 1512 aaKnown RBP2.74□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms