RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 LINC00526Q96FQ7 95 aa7.24□□□□□ -1.25
COL6A3-210ENST00000473258 APC2O95996 2303 aa7.24□□□□□ -1.25
COL6A3-210ENST00000473258 USP54Q70EL1 1684 aa7.24□□□□□ -1.25
COL6A3-210ENST00000473258 ROBO1Q9Y6N7 1651 aa7.24□□□□□ -1.25
COL6A3-210ENST00000473258 LRP6O75581 1613 aa7.24□□□□□ -1.25
COL6A3-210ENST00000473258 CLEC19AQ6UXS0 136 aa7.24□□□□□ -1.25
COL6A3-210ENST00000473258 PIFOQ8TCI5 191 aa7.24□□□□□ -1.25
COL6A3-210ENST00000473258 KLF14Q8TD94 323 aaPredicted RBP7.24□□□□□ -1.25
COL6A3-210ENST00000473258 IGKV1D-33P01593 117 aa7.24□□□□□ -1.25
COL6A3-210ENST00000473258 IGKV1-33P01594 117 aa7.24□□□□□ -1.25
COL6A3-210ENST00000473258 UBE2AP49459 152 aa7.24□□□□□ -1.25
COL6A3-210ENST00000473258 RSPO4Q2I0M5 234 aaPredicted RBP7.24□□□□□ -1.25
COL6A3-210ENST00000473258 A0A0G2JRQ6 117 aa7.23□□□□□ -1.25
COL6A3-210ENST00000473258 XRN1Q8IZH2 1706 aaKnown RBP7.23□□□□□ -1.25
COL6A3-210ENST00000473258 IGHV1OR15-9A0A0B4J2B8 117 aa7.23□□□□□ -1.25
COL6A3-210ENST00000473258 TRGV4A0A0C4DH28 118 aa7.23□□□□□ -1.25
COL6A3-210ENST00000473258 SRRM4A7MD48 611 aaKnown RBP7.23□□□□□ -1.25
COL6A3-210ENST00000473258 GATA1P15976 413 aaPredicted RBP7.23□□□□□ -1.25
COL6A3-210ENST00000473258 Q6ZRM9 215 aa7.23□□□□□ -1.25
COL6A3-210ENST00000473258 LINC00477Q96M19 166 aa7.23□□□□□ -1.25
COL6A3-210ENST00000473258 SRXN1Q9BYN0 137 aa7.23□□□□□ -1.25
COL6A3-210ENST00000473258 PRORYQ9H606 182 aa7.23□□□□□ -1.25
COL6A3-210ENST00000473258 AHCTF1Q8WYP5 2266 aa7.23□□□□□ -1.25
COL6A3-210ENST00000473258 SDHAF1A6NFY7 115 aa7.23□□□□□ -1.25
COL6A3-210ENST00000473258 IGFBP6P24592 240 aaPredicted RBP7.23□□□□□ -1.25
COL6A3-210ENST00000473258 RNF144BQ7Z419 303 aa7.23□□□□□ -1.25
COL6A3-210ENST00000473258 LINC01465Q8N7H1 131 aa7.23□□□□□ -1.25
COL6A3-210ENST00000473258 TMEM167AQ8TBQ9 72 aa7.23□□□□□ -1.25
COL6A3-210ENST00000473258 DCTN5Q9BTE1 182 aa7.23□□□□□ -1.25
COL6A3-210ENST00000473258 LOC107984640A0A0U1RRK4 108 aa7.23□□□□□ -1.25
COL6A3-210ENST00000473258 NDUFA11Q86Y39 141 aa7.23□□□□□ -1.25
COL6A3-210ENST00000473258 AGPAT4-IT1Q9H0P7 198 aa7.23□□□□□ -1.25
COL6A3-210ENST00000473258 WNK2Q9Y3S1 2297 aa7.23□□□□□ -1.25
COL6A3-210ENST00000473258 KIAA2026Q5HYC2 2103 aa7.23□□□□□ -1.25
COL6A3-210ENST00000473258 CLEC2BQ92478 149 aa7.22□□□□□ -1.25
COL6A3-210ENST00000473258 A0A087WWL8 130 aa7.22□□□□□ -1.25
COL6A3-210ENST00000473258 TMEM133Q9H2Q1 129 aa7.22□□□□□ -1.25
COL6A3-210ENST00000473258 LRRK1Q38SD2 2015 aa7.22□□□□□ -1.25
COL6A3-210ENST00000473258 IGKV1D-43A0A0B4J1Z2 117 aa7.22□□□□□ -1.25
COL6A3-210ENST00000473258 I3L3M4 83 aa7.22□□□□□ -1.25
COL6A3-210ENST00000473258 NDUFS5O43920 106 aa7.22□□□□□ -1.25
COL6A3-210ENST00000473258 COL22A1Q8NFW1 1626 aaPredicted RBP7.22□□□□□ -1.25
COL6A3-210ENST00000473258 F5P12259 2224 aa7.22□□□□□ -1.25
COL6A3-210ENST00000473258 TP53BP1Q12888 1972 aaPredicted RBP7.22□□□□□ -1.25
COL6A3-210ENST00000473258 ITLN2Q8WWU7 325 aaPredicted RBP7.22□□□□□ -1.25
COL6A3-210ENST00000473258 REPIN1Q9BWE0 567 aaKnown RBP7.22□□□□□ -1.25
COL6A3-210ENST00000473258 FOXF2Q12947 444 aa7.21□□□□□ -1.25
COL6A3-210ENST00000473258 Q6ZS52 159 aa7.21□□□□□ -1.25
COL6A3-210ENST00000473258 LYZL4Q96KX0 146 aa7.21□□□□□ -1.25
COL6A3-210ENST00000473258 IGHV3-73A0A0B4J1V6 119 aa7.21□□□□□ -1.26
COL6A3-210ENST00000473258 TFF1P04155 84 aa7.21□□□□□ -1.26
COL6A3-210ENST00000473258 LINC00114Q6XXX2 140 aa7.21□□□□□ -1.26
COL6A3-210ENST00000473258 TMEM61Q8N0U2 210 aa7.21□□□□□ -1.26
COL6A3-210ENST00000473258 KLHL30-AS1Q8NEE0 82 aa7.21□□□□□ -1.26
COL6A3-210ENST00000473258 TMEM131LA2VDJ0 1609 aa7.21□□□□□ -1.26
COL6A3-210ENST00000473258 UBR1Q8IWV7 1749 aa7.21□□□□□ -1.26
COL6A3-210ENST00000473258 KIF26BQ2KJY2 2108 aa7.21□□□□□ -1.26
COL6A3-210ENST00000473258 H3BQ85 93 aa7.21□□□□□ -1.26
COL6A3-210ENST00000473258 SS18Q15532 418 aa7.21□□□□□ -1.26
COL6A3-210ENST00000473258 FAM201AQ5SY85 155 aa7.21□□□□□ -1.26
COL6A3-210ENST00000473258 CFHR4Q92496 578 aa7.21□□□□□ -1.26
COL6A3-210ENST00000473258 TM2D2Q9BX73 214 aa7.21□□□□□ -1.26
COL6A3-210ENST00000473258 FOXS1O43638 330 aa7.21□□□□□ -1.26
COL6A3-210ENST00000473258 NXPH4O95158 308 aa7.21□□□□□ -1.26
COL6A3-210ENST00000473258 CTRLP40313 264 aa7.21□□□□□ -1.26
COL6A3-210ENST00000473258 BLCAPP62952 87 aa7.21□□□□□ -1.26
COL6A3-210ENST00000473258 C9orf139Q6ZV77 190 aa7.21□□□□□ -1.26
COL6A3-210ENST00000473258 DPM3Q9P2X0 92 aa7.21□□□□□ -1.26
COL6A3-210ENST00000473258 C2orf70A6NJV1 201 aa7.2□□□□□ -1.26
COL6A3-210ENST00000473258 FOXE3Q13461 319 aa7.2□□□□□ -1.26
COL6A3-210ENST00000473258 DTX1Q86Y01 620 aa7.2□□□□□ -1.26
COL6A3-210ENST00000473258 PDE6GP18545 87 aa7.2□□□□□ -1.26
COL6A3-210ENST00000473258 TMEM200BQ69YZ2 307 aa7.2□□□□□ -1.26
COL6A3-210ENST00000473258 SPINK14Q6IE38 97 aa7.2□□□□□ -1.26
COL6A3-210ENST00000473258 K7ERS5 55 aa7.2□□□□□ -1.26
COL6A3-210ENST00000473258 SIGLEC9Q9Y336 463 aa7.2□□□□□ -1.26
COL6A3-210ENST00000473258 WDR81Q562E7 1941 aa7.2□□□□□ -1.26
COL6A3-210ENST00000473258 TRAV26-2A0A0B4J265 109 aa7.19□□□□□ -1.26
COL6A3-210ENST00000473258 A0A1W2PRX2 142 aa7.19□□□□□ -1.26
COL6A3-210ENST00000473258 Q6P435 159 aa7.19□□□□□ -1.26
COL6A3-210ENST00000473258 IGHV1-69DA0A0B4J2H0 117 aa7.19□□□□□ -1.26
COL6A3-210ENST00000473258 FAM120AOSQ5T036 256 aa7.19□□□□□ -1.26
COL6A3-210ENST00000473258 ZCCHC24Q8N2G6 241 aaKnown RBP7.19□□□□□ -1.26
COL6A3-210ENST00000473258 FAM168AQ92567 244 aa7.19□□□□□ -1.26
COL6A3-210ENST00000473258 QRFPP83859 136 aa7.19□□□□□ -1.26
COL6A3-210ENST00000473258 OPRPNQ99935 248 aaPredicted RBP7.19□□□□□ -1.26
COL6A3-210ENST00000473258 PRR15LQ9BU68 103 aa7.19□□□□□ -1.26
COL6A3-210ENST00000473258 Q9H8V8 135 aa7.19□□□□□ -1.26
COL6A3-210ENST00000473258 ADAMTSL3P82987 1691 aa7.19□□□□□ -1.26
COL6A3-210ENST00000473258 TRPM3Q9HCF6 1732 aaPredicted RBP7.18□□□□□ -1.26
COL6A3-210ENST00000473258 ELSPBP1Q96BH3 223 aa7.18□□□□□ -1.26
COL6A3-210ENST00000473258 SNURFQ9Y675 71 aa7.18□□□□□ -1.26
COL6A3-210ENST00000473258 LINC00312Q9Y6C7 94 aa7.18□□□□□ -1.26
COL6A3-210ENST00000473258 LRRC37A3O60309 1634 aa7.18□□□□□ -1.26
COL6A3-210ENST00000473258 SOSTDC1Q6X4U4 206 aa7.18□□□□□ -1.26
COL6A3-210ENST00000473258 IGKV1-12A0A0C4DH73 117 aa7.18□□□□□ -1.26
COL6A3-210ENST00000473258 LECT2O14960 151 aa7.18□□□□□ -1.26
COL6A3-210ENST00000473258 IGKV1D-12P01611 117 aa7.18□□□□□ -1.26
COL6A3-210ENST00000473258 SP7Q8TDD2 431 aaPredicted RBP7.18□□□□□ -1.26
COL6A3-210ENST00000473258 POLEQ07864 2286 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms