RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 M0R1W7 72 aa9.26□□□□□ -0.93
NPHP4-204ENST00000460696 FXYD7P58549 80 aa9.26□□□□□ -0.93
NPHP4-204ENST00000460696 HIST1H1AQ02539 215 aaPredicted RBP9.26□□□□□ -0.93
NPHP4-204ENST00000460696 ORMDL3Q8N138 153 aa9.26□□□□□ -0.93
NPHP4-204ENST00000460696 C11orf44Q8N8P7 122 aa9.26□□□□□ -0.93
NPHP4-204ENST00000460696 SHANK2-AS3Q9BTD1 123 aa9.26□□□□□ -0.93
NPHP4-204ENST00000460696 LAMTOR2Q9Y2Q5 125 aa9.26□□□□□ -0.93
NPHP4-204ENST00000460696 COA6Q5JTJ3 125 aaKnown RBP9.25□□□□□ -0.93
NPHP4-204ENST00000460696 THAP8Q8NA92 274 aa9.25□□□□□ -0.93
NPHP4-204ENST00000460696 FAM167A-AS1Q96KT0 104 aa9.25□□□□□ -0.93
NPHP4-204ENST00000460696 YPEL4Q96NS1 127 aa9.25□□□□□ -0.93
NPHP4-204ENST00000460696 SORL1Q92673 2214 aa9.25□□□□□ -0.93
NPHP4-204ENST00000460696 CFAP47Q6ZTR5 3102 aa9.25□□□□□ -0.93
NPHP4-204ENST00000460696 FABP5P3A8MUU1 101 aa9.25□□□□□ -0.93
NPHP4-204ENST00000460696 M0R381 172 aa9.25□□□□□ -0.93
NPHP4-204ENST00000460696 NUDT3O95989 172 aa9.25□□□□□ -0.93
NPHP4-204ENST00000460696 ARMS2P0C7Q2 107 aa9.25□□□□□ -0.93
NPHP4-204ENST00000460696 SAA4P35542 130 aa9.25□□□□□ -0.93
NPHP4-204ENST00000460696 DMRTC2Q8IXT2 367 aaPredicted RBP9.25□□□□□ -0.93
NPHP4-204ENST00000460696 MYOZ3Q8TDC0 251 aa9.25□□□□□ -0.93
NPHP4-204ENST00000460696 VPS25Q9BRG1 176 aa9.25□□□□□ -0.93
NPHP4-204ENST00000460696 IL17RELQ6ZVW7 336 aa9.25□□□□□ -0.93
NPHP4-204ENST00000460696 TRAV9-2A0A087WT02 112 aa9.24□□□□□ -0.93
NPHP4-204ENST00000460696 FAM181BA6NEQ2 426 aa9.24□□□□□ -0.93
NPHP4-204ENST00000460696 PRSS46E5RG02 174 aa9.24□□□□□ -0.93
NPHP4-204ENST00000460696 NDPQ00604 133 aa9.24□□□□□ -0.93
NPHP4-204ENST00000460696 LYZL1Q6UWQ5 148 aa9.24□□□□□ -0.93
NPHP4-204ENST00000460696 GLMPQ8WWB7 406 aa9.24□□□□□ -0.93
NPHP4-204ENST00000460696 PHLDA3Q9Y5J5 127 aa9.24□□□□□ -0.93
NPHP4-204ENST00000460696 NCR2O95944 276 aa9.24□□□□□ -0.93
NPHP4-204ENST00000460696 Q6AWC8 147 aa9.24□□□□□ -0.93
NPHP4-204ENST00000460696 G3V318 75 aa9.24□□□□□ -0.93
NPHP4-204ENST00000460696 ZNF503Q96F45 646 aa9.24□□□□□ -0.93
NPHP4-204ENST00000460696 SMIM27A0A1W2PRY6 76 aa9.23□□□□□ -0.93
NPHP4-204ENST00000460696 PSG3Q16557 428 aa9.23□□□□□ -0.93
NPHP4-204ENST00000460696 MINOS1Q5TGZ0 78 aa9.23□□□□□ -0.93
NPHP4-204ENST00000460696 RASL11AQ6T310 242 aa9.23□□□□□ -0.93
NPHP4-204ENST00000460696 MINOS1-NBL1R4GNA1 71 aa9.23□□□□□ -0.93
NPHP4-204ENST00000460696 TRBV19A0A075B6N1 114 aa9.23□□□□□ -0.93
NPHP4-204ENST00000460696 DNLZQ5SXM8 178 aa9.23□□□□□ -0.93
NPHP4-204ENST00000460696 MGAM2Q2M2H8 2515 aa9.23□□□□□ -0.93
NPHP4-204ENST00000460696 IGLV2-23P01705 113 aa9.23□□□□□ -0.93
NPHP4-204ENST00000460696 DPF1Q92782 380 aa9.23□□□□□ -0.93
NPHP4-204ENST00000460696 ZNF414Q96IQ9 312 aa9.23□□□□□ -0.93
NPHP4-204ENST00000460696 D6R8Y8 96 aa9.22□□□□□ -0.93
NPHP4-204ENST00000460696 SNHG12Q9BXW3 62 aa9.22□□□□□ -0.93
NPHP4-204ENST00000460696 LOC102724200A0A096LPH7 203 aaPredicted RBP9.22□□□□□ -0.93
NPHP4-204ENST00000460696 C7orf71A4D174 169 aa9.22□□□□□ -0.93
NPHP4-204ENST00000460696 EVI2AP22794 236 aa9.22□□□□□ -0.93
NPHP4-204ENST00000460696 CDSNQ15517 529 aa9.22□□□□□ -0.93
NPHP4-204ENST00000460696 C12orf54Q6X4T0 127 aa9.22□□□□□ -0.93
NPHP4-204ENST00000460696 hDV102S1A0JD36 115 aa9.22□□□□□ -0.93
NPHP4-204ENST00000460696 IGLV1-47P01700 117 aa9.22□□□□□ -0.93
NPHP4-204ENST00000460696 SRD5A1P18405 259 aa9.22□□□□□ -0.93
NPHP4-204ENST00000460696 TDRG1Q3Y452 100 aa9.22□□□□□ -0.93
NPHP4-204ENST00000460696 TMEM97Q5BJF2 176 aa9.22□□□□□ -0.93
NPHP4-204ENST00000460696 FAM231DQ6ZW35 169 aa9.22□□□□□ -0.93
NPHP4-204ENST00000460696 AMN1Q8IY45 258 aa9.22□□□□□ -0.93
NPHP4-204ENST00000460696 RAB37Q96AX2 223 aa9.22□□□□□ -0.93
NPHP4-204ENST00000460696 MRPL27Q9P0M9 148 aaKnown RBP9.22□□□□□ -0.93
NPHP4-204ENST00000460696 SH2D1AO60880 128 aa9.22□□□□□ -0.93
NPHP4-204ENST00000460696 IGKV1-17P01599 117 aa9.22□□□□□ -0.93
NPHP4-204ENST00000460696 FBLN7Q53RD9 439 aa9.22□□□□□ -0.93
NPHP4-204ENST00000460696 DMRTA1Q5VZB9 504 aa9.22□□□□□ -0.93
NPHP4-204ENST00000460696 ZNF491Q8N8L2 437 aa9.22□□□□□ -0.93
NPHP4-204ENST00000460696 C8orf31Q8N9H6 132 aa9.22□□□□□ -0.93
NPHP4-204ENST00000460696 C8orf49Q96NF6 230 aa9.22□□□□□ -0.93
NPHP4-204ENST00000460696 OOSP1A8MZH6 123 aa9.21□□□□□ -0.93
NPHP4-204ENST00000460696 SMKR1H3BMG3 65 aa9.21□□□□□ -0.93
NPHP4-204ENST00000460696 ATP6V0E1O15342 81 aa9.21□□□□□ -0.93
NPHP4-204ENST00000460696 FOSL1P15407 271 aa9.21□□□□□ -0.93
NPHP4-204ENST00000460696 ALKBH7Q9BT30 221 aaPredicted RBP9.21□□□□□ -0.93
NPHP4-204ENST00000460696 NPFFO15130 113 aa9.21□□□□□ -0.94
NPHP4-204ENST00000460696 NUTF2P61970 127 aaKnown RBP9.21□□□□□ -0.94
NPHP4-204ENST00000460696 RUSC1-AS1Q66K80 236 aa9.21□□□□□ -0.94
NPHP4-204ENST00000460696 A0A1B0GW15 77 aa9.21□□□□□ -0.94
NPHP4-204ENST00000460696 ERCC8Q13216 396 aa9.21□□□□□ -0.94
NPHP4-204ENST00000460696 FAM106AQ4KMX7 169 aa9.21□□□□□ -0.94
NPHP4-204ENST00000460696 Q8N7P7 452 aa9.21□□□□□ -0.94
NPHP4-204ENST00000460696 TRAV41A0A0B4J266 112 aa9.2□□□□□ -0.94
NPHP4-204ENST00000460696 TMEM213A2RRL7 107 aa9.2□□□□□ -0.94
NPHP4-204ENST00000460696 PAX8Q06710 450 aa9.2□□□□□ -0.94
NPHP4-204ENST00000460696 RNF182Q8N6D2 247 aa9.2□□□□□ -0.94
NPHP4-204ENST00000460696 WFDC12Q8WWY7 111 aa9.2□□□□□ -0.94
NPHP4-204ENST00000460696 C2orf88Q9BSF0 95 aa9.2□□□□□ -0.94
NPHP4-204ENST00000460696 CHCHD1Q96BP2 118 aaKnown RBP9.2□□□□□ -0.94
NPHP4-204ENST00000460696 SRSF8Q9BRL6 282 aaKnown RBP9.2□□□□□ -0.94
NPHP4-204ENST00000460696 H3BUX3 64 aa9.2□□□□□ -0.94
NPHP4-204ENST00000460696 ID1P41134 155 aa9.2□□□□□ -0.94
NPHP4-204ENST00000460696 CACNG7P62955 275 aa9.2□□□□□ -0.94
NPHP4-204ENST00000460696 LYPD1Q8N2G4 141 aa9.2□□□□□ -0.94
NPHP4-204ENST00000460696 ZC2HC1AQ96GY0 325 aa9.2□□□□□ -0.94
NPHP4-204ENST00000460696 SLC50A1Q9BRV3 221 aa9.2□□□□□ -0.94
NPHP4-204ENST00000460696 LINC00574Q9H8X3 128 aa9.2□□□□□ -0.94
NPHP4-204ENST00000460696 FAM74A4Q5TZK3 123 aa9.19□□□□□ -0.94
NPHP4-204ENST00000460696 TMEM160Q9NX00 188 aa9.19□□□□□ -0.94
NPHP4-204ENST00000460696 ZZEF1O43149 2961 aa9.19□□□□□ -0.94
NPHP4-204ENST00000460696 IGKV1D-37A0A075B6S9 117 aa9.19□□□□□ -0.94
NPHP4-204ENST00000460696 GCSHP23434 173 aa9.19□□□□□ -0.94
NPHP4-204ENST00000460696 TMEM208Q9BTX3 173 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 123.4 ms