RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 VAMP2P63027 116 aa9.23□□□□□ -0.93
HMGB3-204ENST00000448905 DAZ2Q13117 558 aaKnown RBP9.23□□□□□ -0.93
HMGB3-204ENST00000448905 C12orf45Q8N5I9 185 aaPredicted RBP9.23□□□□□ -0.93
HMGB3-204ENST00000448905 PYGO2Q9BRQ0 406 aa9.23□□□□□ -0.93
HMGB3-204ENST00000448905 TRAV12-3A0A0B4J271 114 aa9.22□□□□□ -0.93
HMGB3-204ENST00000448905 EREGO14944 169 aa9.22□□□□□ -0.93
HMGB3-204ENST00000448905 CNPY1Q3B7I2 92 aa9.22□□□□□ -0.93
HMGB3-204ENST00000448905 GFI1BQ5VTD9 330 aa9.22□□□□□ -0.93
HMGB3-204ENST00000448905 TRIQKQ629K1 86 aa9.22□□□□□ -0.93
HMGB3-204ENST00000448905 LINC00612Q8N6U2 182 aa9.22□□□□□ -0.93
HMGB3-204ENST00000448905 ZBTB8BQ8NAP8 495 aaPredicted RBP9.22□□□□□ -0.93
HMGB3-204ENST00000448905 ODF3Q96PU9 254 aa9.22□□□□□ -0.93
HMGB3-204ENST00000448905 PGPEP1Q9NXJ5 209 aa9.22□□□□□ -0.93
HMGB3-204ENST00000448905 PTTG2Q9NZH5 202 aa9.22□□□□□ -0.93
HMGB3-204ENST00000448905 MRPS16Q9Y3D3 137 aaKnown RBP9.22□□□□□ -0.93
HMGB3-204ENST00000448905 CCNKO75909 580 aa9.21□□□□□ -0.94
HMGB3-204ENST00000448905 PRB4P10163 310 aaPredicted RBP9.21□□□□□ -0.94
HMGB3-204ENST00000448905 HOXA5P20719 270 aa9.21□□□□□ -0.94
HMGB3-204ENST00000448905 CAMLGP49069 296 aa9.21□□□□□ -0.94
HMGB3-204ENST00000448905 ZNF846Q147U1 533 aa9.21□□□□□ -0.94
HMGB3-204ENST00000448905 OR1L4Q8NGR5 311 aa9.21□□□□□ -0.94
HMGB3-204ENST00000448905 C20orf85Q9H1P6 137 aa9.21□□□□□ -0.94
HMGB3-204ENST00000448905 C7orf66A4D0T2 115 aa9.2□□□□□ -0.94
HMGB3-204ENST00000448905 PRAC2D3DTV9 90 aa9.2□□□□□ -0.94
HMGB3-204ENST00000448905 J3KRW8 73 aa9.2□□□□□ -0.94
HMGB3-204ENST00000448905 SLC25A5P05141 298 aaKnown RBP9.2□□□□□ -0.94
HMGB3-204ENST00000448905 CT45A10P0DMU9 189 aa9.2□□□□□ -0.94
HMGB3-204ENST00000448905 BCAP31P51572 246 aa9.2□□□□□ -0.94
HMGB3-204ENST00000448905 KIR3DS1Q14943 382 aa9.2□□□□□ -0.94
HMGB3-204ENST00000448905 ZNF680Q8NEM1 530 aa9.2□□□□□ -0.94
HMGB3-204ENST00000448905 ZNF431Q8TF32 576 aaPredicted RBP9.2□□□□□ -0.94
HMGB3-204ENST00000448905 TMEM37Q8WXS4 190 aa9.2□□□□□ -0.94
HMGB3-204ENST00000448905 SAT2Q96F10 170 aaPredicted RBP9.2□□□□□ -0.94
HMGB3-204ENST00000448905 PFDN5Q99471 154 aa9.2□□□□□ -0.94
HMGB3-204ENST00000448905 ZNF586Q9NXT0 402 aa9.2□□□□□ -0.94
HMGB3-204ENST00000448905 FLVCR2Q9UPI3 526 aa9.2□□□□□ -0.94
HMGB3-204ENST00000448905 H3BQ15 152 aa9.19□□□□□ -0.94
HMGB3-204ENST00000448905 H3BTX0 84 aa9.19□□□□□ -0.94
HMGB3-204ENST00000448905 IGLC2P0DOY2 106 aa9.19□□□□□ -0.94
HMGB3-204ENST00000448905 SLAQ13239 276 aa9.19□□□□□ -0.94
HMGB3-204ENST00000448905 OPCMLQ14982 345 aa9.19□□□□□ -0.94
HMGB3-204ENST00000448905 MITD1Q8WV92 249 aa9.19□□□□□ -0.94
HMGB3-204ENST00000448905 LINC00477Q96M19 166 aa9.19□□□□□ -0.94
HMGB3-204ENST00000448905 PARD6GQ9BYG4 376 aaPredicted RBP9.19□□□□□ -0.94
HMGB3-204ENST00000448905 TRAV9-2A0A087WT02 112 aa9.18□□□□□ -0.94
HMGB3-204ENST00000448905 LINC00854A0A1B0GVQ3 168 aa9.18□□□□□ -0.94
HMGB3-204ENST00000448905 NPIPB6E9PJ23 425 aa9.18□□□□□ -0.94
HMGB3-204ENST00000448905 ZNF253O75346 499 aa9.18□□□□□ -0.94
HMGB3-204ENST00000448905 MBPP02686 304 aaPredicted RBP9.18□□□□□ -0.94
HMGB3-204ENST00000448905 PVALBP20472 110 aaPredicted RBP9.18□□□□□ -0.94
HMGB3-204ENST00000448905 CAV2P51636 162 aa9.18□□□□□ -0.94
HMGB3-204ENST00000448905 ARL16Q0P5N6 197 aa9.18□□□□□ -0.94
HMGB3-204ENST00000448905 NRARPQ7Z6K4 114 aa9.18□□□□□ -0.94
HMGB3-204ENST00000448905 MRPL53Q96EL3 112 aaKnown RBP9.18□□□□□ -0.94
HMGB3-204ENST00000448905 C18orf15Q96N68 181 aa9.18□□□□□ -0.94
HMGB3-204ENST00000448905 MGST2Q99735 147 aa9.18□□□□□ -0.94
HMGB3-204ENST00000448905 TMPRSS5Q9H3S3 457 aa9.18□□□□□ -0.94
HMGB3-204ENST00000448905 PRELID1Q9Y255 219 aa9.18□□□□□ -0.94
HMGB3-204ENST00000448905 TIMM9Q9Y5J7 89 aa9.18□□□□□ -0.94
HMGB3-204ENST00000448905 TRGV1A0A0A0MS02 117 aa9.17□□□□□ -0.94
HMGB3-204ENST00000448905 SLC17A3O00476 420 aa9.17□□□□□ -0.94
HMGB3-204ENST00000448905 SIVA1O15304 175 aa9.17□□□□□ -0.94
HMGB3-204ENST00000448905 S100A11P31949 105 aa9.17□□□□□ -0.94
HMGB3-204ENST00000448905 BAK1Q16611 211 aa9.17□□□□□ -0.94
HMGB3-204ENST00000448905 Q6ZTI0 123 aa9.17□□□□□ -0.94
HMGB3-204ENST00000448905 EIF4E3Q8N5X7 224 aaKnown RBP9.17□□□□□ -0.94
HMGB3-204ENST00000448905 LINC00467Q9BRT7 94 aa9.17□□□□□ -0.94
HMGB3-204ENST00000448905 KRTAP1-5Q9BYS1 174 aa9.17□□□□□ -0.94
HMGB3-204ENST00000448905 SRRQ9GZT4 340 aa9.17□□□□□ -0.94
HMGB3-204ENST00000448905 GSN-AS1Q9NRJ2 163 aa9.17□□□□□ -0.94
HMGB3-204ENST00000448905 UQCC1Q9NVA1 299 aa9.17□□□□□ -0.94
HMGB3-204ENST00000448905 FUT9Q9Y231 359 aa9.17□□□□□ -0.94
HMGB3-204ENST00000448905 LRP1BQ9NZR2 4599 aa9.17□□□□□ -0.94
HMGB3-204ENST00000448905 A0A096LPF7 62 aa9.16□□□□□ -0.94
HMGB3-204ENST00000448905 TRAV5A0A0B4J249 113 aa9.16□□□□□ -0.94
HMGB3-204ENST00000448905 C7orf71A4D174 169 aa9.16□□□□□ -0.94
HMGB3-204ENST00000448905 FAM25EA8MYX2 175 aa9.16□□□□□ -0.94
HMGB3-204ENST00000448905 PAX4O43316 350 aa9.16□□□□□ -0.94
HMGB3-204ENST00000448905 GPX1P07203 203 aa9.16□□□□□ -0.94
HMGB3-204ENST00000448905 RNASE4P34096 147 aaKnown RBP9.16□□□□□ -0.94
HMGB3-204ENST00000448905 RPL29P47914 159 aaKnown RBP9.16□□□□□ -0.94
HMGB3-204ENST00000448905 KRTAP10-2P60368 255 aa9.16□□□□□ -0.94
HMGB3-204ENST00000448905 ANXA2RQ3ZCQ2 193 aa9.16□□□□□ -0.94
HMGB3-204ENST00000448905 MORN5Q5VZ52 161 aa9.16□□□□□ -0.94
HMGB3-204ENST00000448905 NFE4Q86UQ8 179 aa9.16□□□□□ -0.94
HMGB3-204ENST00000448905 AAMDCQ9H7C9 122 aa9.16□□□□□ -0.94
HMGB3-204ENST00000448905 RCL1Q9Y2P8 373 aaKnown RBP9.16□□□□□ -0.94
HMGB3-204ENST00000448905 ICOSQ9Y6W8 199 aa9.16□□□□□ -0.94
HMGB3-204ENST00000448905 TRBV19A0A075B6N1 114 aa9.15□□□□□ -0.94
HMGB3-204ENST00000448905 C5orf51A6NDU8 294 aa9.15□□□□□ -0.94
HMGB3-204ENST00000448905 EPM2AB3EWF7 344 aa9.15□□□□□ -0.94
HMGB3-204ENST00000448905 MPDU1O75352 247 aa9.15□□□□□ -0.94
HMGB3-204ENST00000448905 CST7O76096 145 aa9.15□□□□□ -0.94
HMGB3-204ENST00000448905 IFNA5P01569 189 aa9.15□□□□□ -0.94
HMGB3-204ENST00000448905 NMBP08949 121 aa9.15□□□□□ -0.94
HMGB3-204ENST00000448905 HIST1H1EP10412 219 aaKnown RBP9.15□□□□□ -0.94
HMGB3-204ENST00000448905 LINC00315P59091 139 aa9.15□□□□□ -0.94
HMGB3-204ENST00000448905 ERVFC1-1P60608 527 aa9.15□□□□□ -0.94
HMGB3-204ENST00000448905 HBG1P69891 147 aa9.15□□□□□ -0.94
HMGB3-204ENST00000448905 HBG2P69892 147 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 1703.5 ms