RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 ODF3BA8MYP8 253 aa11.19□□□□□ -0.62
LIG1-202ENST00000427526 IGLV11-55A0A075B6I3 123 aa11.19□□□□□ -0.62
LIG1-202ENST00000427526 F8W735 103 aaPredicted RBP11.19□□□□□ -0.62
LIG1-202ENST00000427526 M0R3E3 92 aa11.19□□□□□ -0.62
LIG1-202ENST00000427526 PRB4P10163 310 aaPredicted RBP11.19□□□□□ -0.62
LIG1-202ENST00000427526 RIPPLY3P57055 190 aa11.19□□□□□ -0.62
LIG1-202ENST00000427526 RIGQ13278 110 aa11.19□□□□□ -0.62
LIG1-202ENST00000427526 ZNF48Q96MX3 618 aaPredicted RBP11.19□□□□□ -0.62
LIG1-202ENST00000427526 TMUB1Q9BVT8 246 aa11.19□□□□□ -0.62
LIG1-202ENST00000427526 ST20Q9HBF5 79 aa11.19□□□□□ -0.62
LIG1-202ENST00000427526 S4R3C0 116 aa11.19□□□□□ -0.62
LIG1-202ENST00000427526 CFAP46Q8IYW2 2715 aa11.19□□□□□ -0.62
LIG1-202ENST00000427526 CSMD1Q96PZ7 3565 aa11.19□□□□□ -0.62
LIG1-202ENST00000427526 TRAV30A0A087WSZ9 112 aa11.19□□□□□ -0.62
LIG1-202ENST00000427526 PDE6HQ13956 83 aa11.19□□□□□ -0.62
LIG1-202ENST00000427526 C5orf64Q2M2E5 130 aa11.19□□□□□ -0.62
LIG1-202ENST00000427526 AKAP6Q13023 2319 aa11.18□□□□□ -0.62
LIG1-202ENST00000427526 SPTAN1Q13813 2472 aaKnown RBP11.18□□□□□ -0.62
LIG1-202ENST00000427526 A0A1B0GW15 77 aa11.18□□□□□ -0.62
LIG1-202ENST00000427526 NPIPB5A8MRT5 1133 aa11.18□□□□□ -0.62
LIG1-202ENST00000427526 CEACAM3P40198 252 aa11.18□□□□□ -0.62
LIG1-202ENST00000427526 KLRD1Q13241 179 aa11.18□□□□□ -0.62
LIG1-202ENST00000427526 ASH1LQ9NR48 2969 aaKnown RBP11.18□□□□□ -0.62
LIG1-202ENST00000427526 ACACBO00763 2458 aa11.18□□□□□ -0.62
LIG1-202ENST00000427526 GNG7O60262 68 aa11.18□□□□□ -0.62
LIG1-202ENST00000427526 M0R1W7 72 aa11.17□□□□□ -0.62
LIG1-202ENST00000427526 PRTN3P24158 256 aa11.17□□□□□ -0.62
LIG1-202ENST00000427526 PET117Q6UWS5 81 aa11.17□□□□□ -0.62
LIG1-202ENST00000427526 ZNF562Q6V9R5 426 aa11.17□□□□□ -0.62
LIG1-202ENST00000427526 C8orf49Q96NF6 230 aa11.17□□□□□ -0.62
LIG1-202ENST00000427526 hDV102S1A0JD36 115 aa11.17□□□□□ -0.62
LIG1-202ENST00000427526 MFAP4P55083 255 aa11.17□□□□□ -0.62
LIG1-202ENST00000427526 Q6AWC8 147 aa11.17□□□□□ -0.62
LIG1-202ENST00000427526 MAP1LC3CQ9BXW4 147 aa11.17□□□□□ -0.62
LIG1-202ENST00000427526 MED13LQ71F56 2210 aa11.17□□□□□ -0.62
LIG1-202ENST00000427526 ZNF493Q6ZR52 646 aa11.17□□□□□ -0.62
LIG1-202ENST00000427526 TTC9CQ8N5M4 171 aa11.17□□□□□ -0.62
LIG1-202ENST00000427526 TMEM191AQ9H0A3 160 aa11.16□□□□□ -0.62
LIG1-202ENST00000427526 TP73-AS1Q9UF72 201 aa11.16□□□□□ -0.62
LIG1-202ENST00000427526 HSPB8Q9UJY1 196 aa11.16□□□□□ -0.62
LIG1-202ENST00000427526 A0A1W2PRD5 423 aa11.16□□□□□ -0.62
LIG1-202ENST00000427526 A0A1W2PRF3 423 aa11.16□□□□□ -0.62
LIG1-202ENST00000427526 A0A1W2PRM7 423 aa11.16□□□□□ -0.62
LIG1-202ENST00000427526 CSN3P07498 182 aa11.16□□□□□ -0.62
LIG1-202ENST00000427526 NDPQ00604 133 aa11.16□□□□□ -0.62
LIG1-202ENST00000427526 HES1Q14469 280 aa11.16□□□□□ -0.62
LIG1-202ENST00000427526 COX8CQ7Z4L0 72 aa11.15□□□□□ -0.62
LIG1-202ENST00000427526 IGSF10Q6WRI0 2623 aa11.15□□□□□ -0.62
LIG1-202ENST00000427526 RPS20P60866 119 aaKnown RBP11.15□□□□□ -0.62
LIG1-202ENST00000427526 DYNAPQ8N1N2 210 aa11.15□□□□□ -0.62
LIG1-202ENST00000427526 ARPC1AQ92747 370 aa11.15□□□□□ -0.62
LIG1-202ENST00000427526 AAMDCQ9H7C9 122 aa11.15□□□□□ -0.62
LIG1-202ENST00000427526 AP5S1Q9NUS5 200 aa11.15□□□□□ -0.62
LIG1-202ENST00000427526 ZFP36P26651 326 aaKnown RBP11.14□□□□□ -0.63
LIG1-202ENST00000427526 Q8N6K4 173 aa11.14□□□□□ -0.63
LIG1-202ENST00000427526 MCRIP2Q9BUT9 160 aaKnown RBP11.14□□□□□ -0.63
LIG1-202ENST00000427526 COL12A1Q99715 3063 aa11.14□□□□□ -0.63
LIG1-202ENST00000427526 SERTM2A0A1B0GWG4 89 aa11.14□□□□□ -0.63
LIG1-202ENST00000427526 TMEM8BA6NDV4 472 aa11.14□□□□□ -0.63
LIG1-202ENST00000427526 K7ERU9 68 aa11.14□□□□□ -0.63
LIG1-202ENST00000427526 GOSR1O95249 250 aa11.14□□□□□ -0.63
LIG1-202ENST00000427526 LINC01545Q5VT33 79 aa11.14□□□□□ -0.63
LIG1-202ENST00000427526 MEGF9Q9H1U4 602 aa11.14□□□□□ -0.63
LIG1-202ENST00000427526 C21orf62Q9NYP8 219 aa11.14□□□□□ -0.63
LIG1-202ENST00000427526 CT45A10P0DMU9 189 aa11.14□□□□□ -0.63
LIG1-202ENST00000427526 ZNF747Q9BV97 191 aa11.14□□□□□ -0.63
LIG1-202ENST00000427526 SCRT2Q9NQ03 307 aa11.14□□□□□ -0.63
LIG1-202ENST00000427526 PSG9Q00887 426 aa11.13□□□□□ -0.63
LIG1-202ENST00000427526 LYZL1Q6UWQ5 148 aa11.13□□□□□ -0.63
LIG1-202ENST00000427526 TPPP3Q9BW30 176 aa11.13□□□□□ -0.63
LIG1-202ENST00000427526 U3KQK5 164 aa11.13□□□□□ -0.63
LIG1-202ENST00000427526 RHOGP84095 191 aa11.13□□□□□ -0.63
LIG1-202ENST00000427526 EBI3Q14213 229 aa11.13□□□□□ -0.63
LIG1-202ENST00000427526 VAMP3Q15836 100 aa11.13□□□□□ -0.63
LIG1-202ENST00000427526 C1orf122Q6ZSJ8 110 aa11.13□□□□□ -0.63
LIG1-202ENST00000427526 EGR2P11161 476 aaPredicted RBP11.12□□□□□ -0.63
LIG1-202ENST00000427526 CSN1S1P47710 185 aa11.12□□□□□ -0.63
LIG1-202ENST00000427526 CACNA1BQ00975 2339 aa11.12□□□□□ -0.63
LIG1-202ENST00000427526 TMEM189A5PLL7 270 aa11.12□□□□□ -0.63
LIG1-202ENST00000427526 NCBP2LA6PVI3 153 aaKnown RBP11.12□□□□□ -0.63
LIG1-202ENST00000427526 SH2D1AO60880 128 aa11.12□□□□□ -0.63
LIG1-202ENST00000427526 CTSGP08311 255 aa11.12□□□□□ -0.63
LIG1-202ENST00000427526 MPV17L2Q567V2 206 aa11.12□□□□□ -0.63
LIG1-202ENST00000427526 SLC25A34Q6PIV7 304 aa11.12□□□□□ -0.63
LIG1-202ENST00000427526 PRSS3P2Q8NHM4 247 aa11.12□□□□□ -0.63
LIG1-202ENST00000427526 MS4A6AQ9H2W1 248 aa11.12□□□□□ -0.63
LIG1-202ENST00000427526 A0A096LNJ9 63 aa11.11□□□□□ -0.63
LIG1-202ENST00000427526 IGHG4P01861 327 aa11.11□□□□□ -0.63
LIG1-202ENST00000427526 FAM106CPP0CH98 169 aa11.11□□□□□ -0.63
LIG1-202ENST00000427526 EFNA4P52798 201 aa11.11□□□□□ -0.63
LIG1-202ENST00000427526 FAM106AQ4KMX7 169 aa11.11□□□□□ -0.63
LIG1-202ENST00000427526 CCDC144NLQ6NUI1 221 aa11.11□□□□□ -0.63
LIG1-202ENST00000427526 VMO1Q7Z5L0 202 aa11.11□□□□□ -0.63
LIG1-202ENST00000427526 THYN1Q9P016 225 aa11.11□□□□□ -0.63
LIG1-202ENST00000427526 SMAD5-AS1Q9Y6J3 95 aa11.11□□□□□ -0.63
LIG1-202ENST00000427526 IGKV2-40A0A087WW87 121 aaPredicted RBP11.11□□□□□ -0.63
LIG1-202ENST00000427526 TMEM213A2RRL7 107 aa11.11□□□□□ -0.63
LIG1-202ENST00000427526 IGKV2D-40P01614 121 aaPredicted RBP11.11□□□□□ -0.63
LIG1-202ENST00000427526 IGHV3-23P01764 117 aa11.11□□□□□ -0.63
LIG1-202ENST00000427526 RPL7P18124 248 aaKnown RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms