RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 SNURFLB1AK76 121 aa19.36■□□□□ 0.69
SHOX2-201ENST00000389589 NPIPB6E9PJ23 425 aa19.36■□□□□ 0.69
SHOX2-201ENST00000389589 NPFFR1Q9GZQ6 430 aa19.36■□□□□ 0.69
SHOX2-201ENST00000389589 HOXA3O43365 443 aaPredicted RBP19.35■□□□□ 0.69
SHOX2-201ENST00000389589 C16orf54Q6UWD8 224 aa19.35■□□□□ 0.69
SHOX2-201ENST00000389589 SPINK4O60575 86 aa19.34■□□□□ 0.69
SHOX2-201ENST00000389589 NUP35Q8NFH5 326 aa19.34■□□□□ 0.69
SHOX2-201ENST00000389589 ZC2HC1AQ96GY0 325 aa19.34■□□□□ 0.69
SHOX2-201ENST00000389589 NEU1Q99519 415 aa19.34■□□□□ 0.69
SHOX2-201ENST00000389589 GFRA4Q9GZZ7 299 aa19.34■□□□□ 0.69
SHOX2-201ENST00000389589 IGHV3OR16-13A0A075B7E8 117 aa19.34■□□□□ 0.69
SHOX2-201ENST00000389589 IGHV3-74A0A0B4J1X5 117 aa19.34■□□□□ 0.69
SHOX2-201ENST00000389589 SLC35B1P78383 322 aa19.34■□□□□ 0.69
SHOX2-201ENST00000389589 GFI1BQ5VTD9 330 aa19.34■□□□□ 0.69
SHOX2-201ENST00000389589 FAM231BA6NCW3 169 aa19.33■□□□□ 0.69
SHOX2-201ENST00000389589 S100A2P29034 98 aa19.33■□□□□ 0.69
SHOX2-201ENST00000389589 SAPCD1Q5SSQ6 148 aa19.33■□□□□ 0.69
SHOX2-201ENST00000389589 LCN12Q6JVE5 192 aa19.33■□□□□ 0.69
SHOX2-201ENST00000389589 MRPL54Q6P161 138 aaKnown RBP19.33■□□□□ 0.69
SHOX2-201ENST00000389589 LCNL1Q6ZST4 164 aa19.33■□□□□ 0.69
SHOX2-201ENST00000389589 WIPF2Q8TF74 440 aaPredicted RBP19.33■□□□□ 0.69
SHOX2-201ENST00000389589 TEX15Q9BXT5 2789 aa19.33■□□□□ 0.68
SHOX2-201ENST00000389589 IGHV3-49A0A0A0MS15 119 aa19.32■□□□□ 0.68
SHOX2-201ENST00000389589 IFITM10A6NMD0 228 aa19.32■□□□□ 0.68
SHOX2-201ENST00000389589 HIGD1CA8MV81 97 aa19.32■□□□□ 0.68
SHOX2-201ENST00000389589 UNQ9165/PRO28630Q6UXU0 137 aa19.32■□□□□ 0.68
SHOX2-201ENST00000389589 TMEM136Q6ZRR5 245 aa19.32■□□□□ 0.68
SHOX2-201ENST00000389589 PEF1Q9UBV8 284 aaKnown RBP19.32■□□□□ 0.68
SHOX2-201ENST00000389589 IGKV2-40A0A087WW87 121 aaPredicted RBP19.32■□□□□ 0.68
SHOX2-201ENST00000389589 IGKV2D-40P01614 121 aaPredicted RBP19.32■□□□□ 0.68
SHOX2-201ENST00000389589 FRMD6-AS1P0C7T7 363 aa19.32■□□□□ 0.68
SHOX2-201ENST00000389589 GLMPQ8WWB7 406 aa19.32■□□□□ 0.68
SHOX2-201ENST00000389589 GPR61Q9BZJ8 451 aa19.32■□□□□ 0.68
SHOX2-201ENST00000389589 HLA-DQA1P01909 254 aa19.31■□□□□ 0.68
SHOX2-201ENST00000389589 SMIM6P0DI80 62 aa19.31■□□□□ 0.68
SHOX2-201ENST00000389589 CT45A10P0DMU9 189 aa19.31■□□□□ 0.68
SHOX2-201ENST00000389589 COX8CQ7Z4L0 72 aa19.31■□□□□ 0.68
SHOX2-201ENST00000389589 ATP5L2Q7Z4Y8 100 aa19.31■□□□□ 0.68
SHOX2-201ENST00000389589 MRPL53Q96EL3 112 aaKnown RBP19.31■□□□□ 0.68
SHOX2-201ENST00000389589 CLEC5AQ9NY25 188 aa19.31■□□□□ 0.68
SHOX2-201ENST00000389589 NBPF19A0A087WUL8 3843 aa19.31■□□□□ 0.68
SHOX2-201ENST00000389589 A0A1W2PS18 150 aa19.31■□□□□ 0.68
SHOX2-201ENST00000389589 IGFL4Q6B9Z1 124 aa19.31■□□□□ 0.68
SHOX2-201ENST00000389589 ZNF702PQ9H963 129 aa19.31■□□□□ 0.68
SHOX2-201ENST00000389589 RBAKDNA6NC62 111 aa19.3■□□□□ 0.68
SHOX2-201ENST00000389589 HLA-DMBP28068 263 aa19.3■□□□□ 0.68
SHOX2-201ENST00000389589 C12orf57Q99622 126 aa19.3■□□□□ 0.68
SHOX2-201ENST00000389589 HELZ2Q9BYK8 2649 aaKnown RBP19.3■□□□□ 0.68
SHOX2-201ENST00000389589 ITPR3Q14573 2671 aa19.3■□□□□ 0.68
SHOX2-201ENST00000389589 FOXC2Q99958 501 aa19.29■□□□□ 0.68
SHOX2-201ENST00000389589 SMAD7O15105 426 aaKnown RBP19.29■□□□□ 0.68
SHOX2-201ENST00000389589 RAB4BP61018 213 aa19.29■□□□□ 0.68
SHOX2-201ENST00000389589 PDZD11Q5EBL8 140 aa19.29■□□□□ 0.68
SHOX2-201ENST00000389589 C8orf86Q6ZUL3 223 aa19.29■□□□□ 0.68
SHOX2-201ENST00000389589 OR2D3Q8NGH3 330 aa19.29■□□□□ 0.68
SHOX2-201ENST00000389589 ZNF705FA8MVS1 300 aaPredicted RBP19.28■□□□□ 0.68
SHOX2-201ENST00000389589 Q71RC1 249 aaPredicted RBP19.28■□□□□ 0.68
SHOX2-201ENST00000389589 PRR25Q96S07 402 aa19.28■□□□□ 0.68
SHOX2-201ENST00000389589 PRB4P10163 310 aaPredicted RBP19.28■□□□□ 0.68
SHOX2-201ENST00000389589 FOXE3Q13461 319 aa19.28■□□□□ 0.68
SHOX2-201ENST00000389589 RBPMS2Q6ZRY4 209 aaKnown RBP19.28■□□□□ 0.68
SHOX2-201ENST00000389589 TCF24Q7RTU0 167 aa19.28■□□□□ 0.68
SHOX2-201ENST00000389589 SIGLECL1Q8N7X8 197 aa19.28■□□□□ 0.68
SHOX2-201ENST00000389589 C8orf49Q96NF6 230 aa19.28■□□□□ 0.68
SHOX2-201ENST00000389589 ELANEP08246 267 aa19.27■□□□□ 0.68
SHOX2-201ENST00000389589 VGLL1Q99990 258 aa19.27■□□□□ 0.68
SHOX2-201ENST00000389589 FAM106AQ4KMX7 169 aa19.26■□□□□ 0.67
SHOX2-201ENST00000389589 TMEM86BQ8N661 226 aa19.26■□□□□ 0.67
SHOX2-201ENST00000389589 GTSF1Q8WW33 167 aa19.26■□□□□ 0.67
SHOX2-201ENST00000389589 ASCL2Q99929 193 aa19.26■□□□□ 0.67
SHOX2-201ENST00000389589 TRAV8-2A0A0B4J237 113 aa19.26■□□□□ 0.67
SHOX2-201ENST00000389589 CRIP1P50238 77 aa19.26■□□□□ 0.67
SHOX2-201ENST00000389589 GPHB5Q86YW7 130 aa19.26■□□□□ 0.67
SHOX2-201ENST00000389589 RNF182Q8N6D2 247 aa19.26■□□□□ 0.67
SHOX2-201ENST00000389589 NDFIP1Q9BT67 221 aa19.26■□□□□ 0.67
SHOX2-201ENST00000389589 DAZ1Q9NQZ3 744 aaKnown RBP19.26■□□□□ 0.67
SHOX2-201ENST00000389589 K7EMT4 169 aa19.25■□□□□ 0.67
SHOX2-201ENST00000389589 CRISP2P16562 243 aa19.25■□□□□ 0.67
SHOX2-201ENST00000389589 MXRA5Q9NR99 2828 aa19.25■□□□□ 0.67
SHOX2-201ENST00000389589 IGHV7-4-1A0A0J9YVY3 117 aa19.24■□□□□ 0.67
SHOX2-201ENST00000389589 FOXA3P55318 350 aaPredicted RBP19.24■□□□□ 0.67
SHOX2-201ENST00000389589 FAM162BQ5T6X4 162 aa19.24■□□□□ 0.67
SHOX2-201ENST00000389589 Q8N2B8 174 aa19.24■□□□□ 0.67
SHOX2-201ENST00000389589 A0A1B0GXF2 115 aa19.24■□□□□ 0.67
SHOX2-201ENST00000389589 FABP4P15090 132 aa19.24■□□□□ 0.67
SHOX2-201ENST00000389589 C10orf99Q6UWK7 81 aa19.24■□□□□ 0.67
SHOX2-201ENST00000389589 C16orf92Q96LL3 132 aa19.24■□□□□ 0.67
SHOX2-201ENST00000389589 HIST1H2BLQ99880 126 aa19.24■□□□□ 0.67
SHOX2-201ENST00000389589 APCSP02743 223 aa19.23■□□□□ 0.67
SHOX2-201ENST00000389589 PRAC2D3DTV9 90 aa19.23■□□□□ 0.67
SHOX2-201ENST00000389589 RPLP1P05386 114 aaKnown RBP19.23■□□□□ 0.67
SHOX2-201ENST00000389589 OR10D4PQ8NGN7 298 aa19.23■□□□□ 0.67
SHOX2-201ENST00000389589 MYOZ3Q8TDC0 251 aa19.23■□□□□ 0.67
SHOX2-201ENST00000389589 PGLYRP4Q96LB8 373 aa19.23■□□□□ 0.67
SHOX2-201ENST00000389589 HBBP68871 147 aa19.22■□□□□ 0.67
SHOX2-201ENST00000389589 PDZD2O15018 2839 aa19.22■□□□□ 0.67
SHOX2-201ENST00000389589 BMI1P35226 326 aa19.21■□□□□ 0.67
SHOX2-201ENST00000389589 IL17RELQ6ZVW7 336 aa19.21■□□□□ 0.67
SHOX2-201ENST00000389589 RNF152Q8N8N0 203 aa19.21■□□□□ 0.67
SHOX2-201ENST00000389589 Q8TAT8 98 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms