RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 A0A1W2PR77 199 aa10.22□□□□□ -0.77
VPS13A-204ENST00000376634 TMEM158Q8WZ71 300 aa10.22□□□□□ -0.77
VPS13A-204ENST00000376634 H3BUX3 64 aa10.22□□□□□ -0.77
VPS13A-204ENST00000376634 GREM1O60565 184 aa10.22□□□□□ -0.77
VPS13A-204ENST00000376634 IGHG3P01860 377 aa10.22□□□□□ -0.77
VPS13A-204ENST00000376634 A0A1B0GWJ7 208 aa10.22□□□□□ -0.77
VPS13A-204ENST00000376634 KLRD1Q13241 179 aa10.22□□□□□ -0.77
VPS13A-204ENST00000376634 PRDM6Q9NQX0 595 aa10.21□□□□□ -0.77
VPS13A-204ENST00000376634 AGMATQ9BSE5 352 aa10.21□□□□□ -0.77
VPS13A-204ENST00000376634 IGLV3-32A0A0A0MS00 114 aa10.21□□□□□ -0.77
VPS13A-204ENST00000376634 DLEU1O43261 78 aa10.21□□□□□ -0.77
VPS13A-204ENST00000376634 LINC00114Q6XXX2 140 aa10.21□□□□□ -0.77
VPS13A-204ENST00000376634 LYZL4Q96KX0 146 aa10.21□□□□□ -0.77
VPS13A-204ENST00000376634 TMEM178BH3BS89 294 aa10.21□□□□□ -0.77
VPS13A-204ENST00000376634 SUPT4H1P63272 117 aaKnown RBP10.21□□□□□ -0.77
VPS13A-204ENST00000376634 LINC01356Q8N9X3 169 aa10.21□□□□□ -0.77
VPS13A-204ENST00000376634 LTBP1Q14766 1721 aa10.21□□□□□ -0.77
VPS13A-204ENST00000376634 F5H768 121 aa10.21□□□□□ -0.78
VPS13A-204ENST00000376634 UBE2E2Q96LR5 201 aa10.21□□□□□ -0.78
VPS13A-204ENST00000376634 LYPD1Q8N2G4 141 aa10.21□□□□□ -0.78
VPS13A-204ENST00000376634 SETD2Q9BYW2 2564 aaPredicted RBP10.21□□□□□ -0.78
VPS13A-204ENST00000376634 TRPT1Q86TN4 253 aaKnown RBP10.21□□□□□ -0.78
VPS13A-204ENST00000376634 PDE6HQ13956 83 aa10.2□□□□□ -0.78
VPS13A-204ENST00000376634 ZNF672Q499Z4 452 aaPredicted RBP10.2□□□□□ -0.78
VPS13A-204ENST00000376634 FBLN5Q9UBX5 448 aa10.2□□□□□ -0.78
VPS13A-204ENST00000376634 IGLV3-19P01714 112 aa10.2□□□□□ -0.78
VPS13A-204ENST00000376634 CGB7P0DN87 165 aa10.2□□□□□ -0.78
VPS13A-204ENST00000376634 MPZP25189 248 aa10.2□□□□□ -0.78
VPS13A-204ENST00000376634 PIEZO2Q9H5I5 2752 aa10.2□□□□□ -0.78
VPS13A-204ENST00000376634 TRBV25-1A0A075B6N4 114 aa10.2□□□□□ -0.78
VPS13A-204ENST00000376634 A0A1B0GW64 132 aa10.2□□□□□ -0.78
VPS13A-204ENST00000376634 H0YJW9 148 aa10.2□□□□□ -0.78
VPS13A-204ENST00000376634 WFDC1Q9HC57 220 aa10.2□□□□□ -0.78
VPS13A-204ENST00000376634 BUB1B-PAK6H3BSN5 160 aa10.2□□□□□ -0.78
VPS13A-204ENST00000376634 IL18BPO95998 194 aa10.2□□□□□ -0.78
VPS13A-204ENST00000376634 DAD1P61803 113 aa10.2□□□□□ -0.78
VPS13A-204ENST00000376634 CPAMD8Q8IZJ3 1885 aa10.2□□□□□ -0.78
VPS13A-204ENST00000376634 LRP4O75096 1905 aa10.2□□□□□ -0.78
VPS13A-204ENST00000376634 RNF5Q99942 180 aa10.2□□□□□ -0.78
VPS13A-204ENST00000376634 MPV17L2Q567V2 206 aa10.19□□□□□ -0.78
VPS13A-204ENST00000376634 RPUSD1Q9UJJ7 312 aaKnown RBP10.19□□□□□ -0.78
VPS13A-204ENST00000376634 MSRB2Q9Y3D2 182 aa10.19□□□□□ -0.78
VPS13A-204ENST00000376634 SRRM5B3KS81 715 aa10.19□□□□□ -0.78
VPS13A-204ENST00000376634 TRBV24-1A0A075B6N3 115 aa10.19□□□□□ -0.78
VPS13A-204ENST00000376634 RMI2Q96E14 147 aa10.19□□□□□ -0.78
VPS13A-204ENST00000376634 MMP23AO75900 390 aa10.19□□□□□ -0.78
VPS13A-204ENST00000376634 PPDPFLQ8WWR9 84 aa10.19□□□□□ -0.78
VPS13A-204ENST00000376634 LHBP01229 141 aa10.19□□□□□ -0.78
VPS13A-204ENST00000376634 CXCL1P09341 107 aa10.19□□□□□ -0.78
VPS13A-204ENST00000376634 TGFBR3LH3BV60 316 aa10.19□□□□□ -0.78
VPS13A-204ENST00000376634 LINC01551Q86U37 167 aa10.19□□□□□ -0.78
VPS13A-204ENST00000376634 A0A0A6YYD4 124 aa10.18□□□□□ -0.78
VPS13A-204ENST00000376634 MRPL27Q9P0M9 148 aaKnown RBP10.18□□□□□ -0.78
VPS13A-204ENST00000376634 PMVKQ15126 192 aa10.18□□□□□ -0.78
VPS13A-204ENST00000376634 NDUFS5O43920 106 aa10.18□□□□□ -0.78
VPS13A-204ENST00000376634 COL4A5P29400 1685 aa10.18□□□□□ -0.78
VPS13A-204ENST00000376634 LY6G6FQ5SQ64 297 aa10.18□□□□□ -0.78
VPS13A-204ENST00000376634 GFRA4Q9GZZ7 299 aa10.18□□□□□ -0.78
VPS13A-204ENST00000376634 IGHG4P01861 327 aa10.18□□□□□ -0.78
VPS13A-204ENST00000376634 BRD3OSQ6XYD6 125 aa10.18□□□□□ -0.78
VPS13A-204ENST00000376634 TRAV25A0A0B4J276 109 aa10.18□□□□□ -0.78
VPS13A-204ENST00000376634 BTCP35070 178 aa10.18□□□□□ -0.78
VPS13A-204ENST00000376634 APOC4P55056 127 aa10.18□□□□□ -0.78
VPS13A-204ENST00000376634 TCF15Q12870 199 aa10.18□□□□□ -0.78
VPS13A-204ENST00000376634 FOXF2Q12947 444 aa10.18□□□□□ -0.78
VPS13A-204ENST00000376634 LIME1Q9H400 295 aa10.18□□□□□ -0.78
VPS13A-204ENST00000376634 SPANXCQ9NY87 97 aa10.18□□□□□ -0.78
VPS13A-204ENST00000376634 IGKV1-9A0A0C4DH69 117 aa10.17□□□□□ -0.78
VPS13A-204ENST00000376634 SMKR1H3BMG3 65 aa10.17□□□□□ -0.78
VPS13A-204ENST00000376634 TMEM75Q8N9X5 138 aa10.17□□□□□ -0.78
VPS13A-204ENST00000376634 UTF1Q5T230 341 aa10.17□□□□□ -0.78
VPS13A-204ENST00000376634 GLRX5Q86SX6 157 aa10.17□□□□□ -0.78
VPS13A-204ENST00000376634 MRPL14Q6P1L8 145 aaKnown RBP10.17□□□□□ -0.78
VPS13A-204ENST00000376634 IL17RELQ6ZVW7 336 aa10.17□□□□□ -0.78
VPS13A-204ENST00000376634 SRSF8Q9BRL6 282 aaKnown RBP10.17□□□□□ -0.78
VPS13A-204ENST00000376634 I3L3M4 83 aa10.17□□□□□ -0.78
VPS13A-204ENST00000376634 TMEM141Q96I45 108 aa10.17□□□□□ -0.78
VPS13A-204ENST00000376634 SHISA3A0PJX4 238 aa10.17□□□□□ -0.78
VPS13A-204ENST00000376634 SPATA31B1PQ5VZV4 182 aa10.17□□□□□ -0.78
VPS13A-204ENST00000376634 ACANP16112 2415 aa10.17□□□□□ -0.78
VPS13A-204ENST00000376634 FN1P02751 2386 aaKnown RBP10.17□□□□□ -0.78
VPS13A-204ENST00000376634 IGLV3-12A0A075B6K2 115 aa10.17□□□□□ -0.78
VPS13A-204ENST00000376634 ZNF362Q5T0B9 420 aaPredicted RBP10.17□□□□□ -0.78
VPS13A-204ENST00000376634 RHODO00212 210 aa10.17□□□□□ -0.78
VPS13A-204ENST00000376634 C22orf46C9J442 243 aa10.16□□□□□ -0.78
VPS13A-204ENST00000376634 ZNF329Q86UD4 541 aa10.16□□□□□ -0.78
VPS13A-204ENST00000376634 RFNGQ9Y644 331 aa10.16□□□□□ -0.78
VPS13A-204ENST00000376634 CLPSL1A2RUU4 121 aa10.16□□□□□ -0.78
VPS13A-204ENST00000376634 ID3Q02535 119 aa10.16□□□□□ -0.78
VPS13A-204ENST00000376634 C10orf55Q5SWW7 151 aa10.16□□□□□ -0.78
VPS13A-204ENST00000376634 VSIRQ9H7M9 311 aa10.16□□□□□ -0.78
VPS13A-204ENST00000376634 SIGLEC9Q9Y336 463 aa10.16□□□□□ -0.78
VPS13A-204ENST00000376634 LY96Q9Y6Y9 160 aa10.16□□□□□ -0.78
VPS13A-204ENST00000376634 F8W1H4 67 aa10.16□□□□□ -0.78
VPS13A-204ENST00000376634 CFHR1Q03591 330 aa10.16□□□□□ -0.78
VPS13A-204ENST00000376634 SAA4P35542 130 aa10.15□□□□□ -0.78
VPS13A-204ENST00000376634 WDR83OSQ9Y284 106 aa10.15□□□□□ -0.78
VPS13A-204ENST00000376634 CRLF1O75462 422 aa10.15□□□□□ -0.78
VPS13A-204ENST00000376634 TRAV12-1A0A0B4J245 112 aa10.15□□□□□ -0.78
VPS13A-204ENST00000376634 CSRP1P21291 193 aaKnown RBP10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms