RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 PSG9Q00887 426 aa11.98□□□□□ -0.49
UPF3B-202ENST00000345865 KLK9Q2XQG4 91 aa11.98□□□□□ -0.49
UPF3B-202ENST00000345865 CRYBG3Q68DQ2 2970 aa11.98□□□□□ -0.49
UPF3B-202ENST00000345865 ZFAND3Q9H8U3 227 aa11.98□□□□□ -0.49
UPF3B-202ENST00000345865 KLK9Q9UKQ9 250 aa11.98□□□□□ -0.49
UPF3B-202ENST00000345865 FLNCQ14315 2725 aa11.97□□□□□ -0.49
UPF3B-202ENST00000345865 CCDC140Q96MF4 163 aa11.97□□□□□ -0.49
UPF3B-202ENST00000345865 VGLL1Q99990 258 aa11.97□□□□□ -0.49
UPF3B-202ENST00000345865 CSN1S1P47710 185 aa11.97□□□□□ -0.49
UPF3B-202ENST00000345865 NUTF2P61970 127 aaKnown RBP11.97□□□□□ -0.49
UPF3B-202ENST00000345865 LINC00173Q6ZV60 143 aa11.97□□□□□ -0.49
UPF3B-202ENST00000345865 TMEM219Q86XT9 240 aa11.97□□□□□ -0.49
UPF3B-202ENST00000345865 Q8TAT8 98 aa11.97□□□□□ -0.49
UPF3B-202ENST00000345865 TPPP3Q9BW30 176 aa11.97□□□□□ -0.49
UPF3B-202ENST00000345865 TMSB15BA0A087X1C1 80 aa11.96□□□□□ -0.49
UPF3B-202ENST00000345865 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.96□□□□□ -0.49
UPF3B-202ENST00000345865 IGHV1-24A0A0C4DH33 117 aa11.96□□□□□ -0.49
UPF3B-202ENST00000345865 SH2D1AO60880 128 aa11.96□□□□□ -0.49
UPF3B-202ENST00000345865 PRR25Q96S07 402 aa11.96□□□□□ -0.49
UPF3B-202ENST00000345865 CLPSL1A2RUU4 121 aa11.95□□□□□ -0.5
UPF3B-202ENST00000345865 ZNF80P51504 273 aaPredicted RBP11.95□□□□□ -0.5
UPF3B-202ENST00000345865 ZNF575Q86XF7 245 aa11.95□□□□□ -0.5
UPF3B-202ENST00000345865 C5orf56Q8N8D9 126 aa11.95□□□□□ -0.5
UPF3B-202ENST00000345865 SPG11Q96JI7 2443 aa11.95□□□□□ -0.5
UPF3B-202ENST00000345865 LINC00614P0C842 121 aa11.95□□□□□ -0.5
UPF3B-202ENST00000345865 CT45A10P0DMU9 189 aa11.95□□□□□ -0.5
UPF3B-202ENST00000345865 BTF3P20290 206 aaKnown RBP11.95□□□□□ -0.5
UPF3B-202ENST00000345865 SSTP61278 116 aa11.95□□□□□ -0.5
UPF3B-202ENST00000345865 RELQ04864 619 aaPredicted RBP11.95□□□□□ -0.5
UPF3B-202ENST00000345865 CLEC19AQ6UXS0 136 aa11.95□□□□□ -0.5
UPF3B-202ENST00000345865 GATD1Q8NB37 220 aa11.95□□□□□ -0.5
UPF3B-202ENST00000345865 IGHV3-66A0A0C4DH42 116 aa11.94□□□□□ -0.5
UPF3B-202ENST00000345865 SERTM2A0A1B0GWG4 89 aa11.94□□□□□ -0.5
UPF3B-202ENST00000345865 BUB3O43684 328 aa11.94□□□□□ -0.5
UPF3B-202ENST00000345865 IGLC3P0DOY3 106 aa11.94□□□□□ -0.5
UPF3B-202ENST00000345865 PAX8Q06710 450 aa11.94□□□□□ -0.5
UPF3B-202ENST00000345865 RIGQ13278 110 aa11.94□□□□□ -0.5
UPF3B-202ENST00000345865 COX8CQ7Z4L0 72 aa11.94□□□□□ -0.5
UPF3B-202ENST00000345865 CHCHD1Q96BP2 118 aaKnown RBP11.94□□□□□ -0.5
UPF3B-202ENST00000345865 IGHV3OR16-13A0A075B7E8 117 aa11.94□□□□□ -0.5
UPF3B-202ENST00000345865 IGHV3-74A0A0B4J1X5 117 aa11.94□□□□□ -0.5
UPF3B-202ENST00000345865 LYZL1Q6UWQ5 148 aa11.94□□□□□ -0.5
UPF3B-202ENST00000345865 BRD3OSQ6XYD6 125 aa11.94□□□□□ -0.5
UPF3B-202ENST00000345865 PIFOQ8TCI5 191 aa11.94□□□□□ -0.5
UPF3B-202ENST00000345865 LINC00527Q9UJ94 153 aa11.94□□□□□ -0.5
UPF3B-202ENST00000345865 CACNA1AO00555 2505 aa11.94□□□□□ -0.5
UPF3B-202ENST00000345865 UTP20O75691 2785 aaKnown RBP11.94□□□□□ -0.5
UPF3B-202ENST00000345865 IGHV4-61A0A0C4DH41 118 aa11.93□□□□□ -0.5
UPF3B-202ENST00000345865 MUC21A0A0G2JKD1 596 aa11.93□□□□□ -0.5
UPF3B-202ENST00000345865 MUC21A0A140T8X8 626 aa11.93□□□□□ -0.5
UPF3B-202ENST00000345865 PRAC2D3DTV9 90 aa11.93□□□□□ -0.5
UPF3B-202ENST00000345865 SCGB2A1O75556 95 aa11.93□□□□□ -0.5
UPF3B-202ENST00000345865 MUC21Q5SSG8 566 aa11.93□□□□□ -0.5
UPF3B-202ENST00000345865 FAM162BQ5T6X4 162 aa11.93□□□□□ -0.5
UPF3B-202ENST00000345865 IGSF10Q6WRI0 2623 aa11.93□□□□□ -0.5
UPF3B-202ENST00000345865 TMEM213A2RRL7 107 aa11.93□□□□□ -0.5
UPF3B-202ENST00000345865 TMEM189A5PLL7 270 aa11.93□□□□□ -0.5
UPF3B-202ENST00000345865 CSN3P07498 182 aa11.93□□□□□ -0.5
UPF3B-202ENST00000345865 RNF182Q8N6D2 247 aa11.92□□□□□ -0.5
UPF3B-202ENST00000345865 ARL6IP6Q8N6S5 226 aa11.92□□□□□ -0.5
UPF3B-202ENST00000345865 ERCC8Q13216 396 aa11.92□□□□□ -0.5
UPF3B-202ENST00000345865 SAPCD1Q5SSQ6 148 aa11.92□□□□□ -0.5
UPF3B-202ENST00000345865 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.92□□□□□ -0.5
UPF3B-202ENST00000345865 PSMG3-AS1Q96PY0 264 aa11.92□□□□□ -0.5
UPF3B-202ENST00000345865 TMEM70Q9BUB7 260 aa11.92□□□□□ -0.5
UPF3B-202ENST00000345865 USP9XQ93008 2570 aaPredicted RBP11.91□□□□□ -0.5
UPF3B-202ENST00000345865 IGHV3-49A0A0A0MS15 119 aa11.91□□□□□ -0.5
UPF3B-202ENST00000345865 ZNF207O43670 478 aaKnown RBP11.91□□□□□ -0.5
UPF3B-202ENST00000345865 Q6AWC8 147 aa11.91□□□□□ -0.5
UPF3B-202ENST00000345865 ZNF493Q6ZR52 646 aa11.91□□□□□ -0.5
UPF3B-202ENST00000345865 CRXO43186 299 aaPredicted RBP11.91□□□□□ -0.5
UPF3B-202ENST00000345865 LEPROTL1O95214 131 aa11.91□□□□□ -0.5
UPF3B-202ENST00000345865 A0A087X0K7 114 aa11.9□□□□□ -0.5
UPF3B-202ENST00000345865 TRAV40A0A0B4J280 105 aa11.9□□□□□ -0.5
UPF3B-202ENST00000345865 IGHV1-69DA0A0B4J2H0 117 aa11.9□□□□□ -0.5
UPF3B-202ENST00000345865 GOSR1O95249 250 aa11.9□□□□□ -0.5
UPF3B-202ENST00000345865 IGHV1-69P01742 117 aa11.9□□□□□ -0.5
UPF3B-202ENST00000345865 IGLL1P15814 213 aa11.9□□□□□ -0.5
UPF3B-202ENST00000345865 C19orf54Q5BKX5 351 aa11.9□□□□□ -0.5
UPF3B-202ENST00000345865 MRPL52Q86TS9 123 aaKnown RBP11.9□□□□□ -0.5
UPF3B-202ENST00000345865 UQCR10Q9UDW1 63 aa11.9□□□□□ -0.5
UPF3B-202ENST00000345865 TRAV9-2A0A087WT02 112 aa11.89□□□□□ -0.51
UPF3B-202ENST00000345865 A0A1B0GW15 77 aa11.89□□□□□ -0.51
UPF3B-202ENST00000345865 EEF1AKMT3Q96AZ1 226 aa11.89□□□□□ -0.51
UPF3B-202ENST00000345865 SYS1-DBNDD2H3BUS1 97 aa11.89□□□□□ -0.51
UPF3B-202ENST00000345865 TCAPO15273 167 aa11.89□□□□□ -0.51
UPF3B-202ENST00000345865 IGHV4-38-2P0DP08 117 aa11.89□□□□□ -0.51
UPF3B-202ENST00000345865 FAM106AQ4KMX7 169 aa11.89□□□□□ -0.51
UPF3B-202ENST00000345865 AMN1Q8IY45 258 aa11.89□□□□□ -0.51
UPF3B-202ENST00000345865 MOB4Q9Y3A3 225 aa11.89□□□□□ -0.51
UPF3B-202ENST00000345865 TRBV7-1A0A0A6YYK4 115 aa11.88□□□□□ -0.51
UPF3B-202ENST00000345865 M0QZK8 103 aa11.88□□□□□ -0.51
UPF3B-202ENST00000345865 BATFQ16520 125 aa11.88□□□□□ -0.51
UPF3B-202ENST00000345865 C10orf105Q8TEF2 133 aa11.88□□□□□ -0.51
UPF3B-202ENST00000345865 MCRIP2Q9BUT9 160 aaKnown RBP11.88□□□□□ -0.51
UPF3B-202ENST00000345865 TRAV41A0A0B4J266 112 aa11.88□□□□□ -0.51
UPF3B-202ENST00000345865 D6R8Y8 96 aa11.88□□□□□ -0.51
UPF3B-202ENST00000345865 Q6ZN92 141 aa11.88□□□□□ -0.51
UPF3B-202ENST00000345865 CCL19Q99731 98 aa11.88□□□□□ -0.51
UPF3B-202ENST00000345865 DOPEY1Q5JWR5 2465 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms