RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 CLPSL1A2RUU4 121 aa18.54■□□□□ 0.56
TRIM54-201ENST00000296098 IGHG4P01861 327 aa18.54■□□□□ 0.56
TRIM54-201ENST00000296098 ARMS2P0C7Q2 107 aa18.54■□□□□ 0.56
TRIM54-201ENST00000296098 RIGQ13278 110 aa18.54■□□□□ 0.56
TRIM54-201ENST00000296098 FAM162BQ5T6X4 162 aa18.54■□□□□ 0.56
TRIM54-201ENST00000296098 IGFL4Q6B9Z1 124 aa18.54■□□□□ 0.56
TRIM54-201ENST00000296098 Q8N976 141 aa18.54■□□□□ 0.56
TRIM54-201ENST00000296098 FAM223BA6NKX1 122 aa18.53■□□□□ 0.56
TRIM54-201ENST00000296098 SH2D1AO60880 128 aa18.53■□□□□ 0.56
TRIM54-201ENST00000296098 MSMBP08118 114 aa18.53■□□□□ 0.56
TRIM54-201ENST00000296098 HLA-DMBP28068 263 aa18.53■□□□□ 0.56
TRIM54-201ENST00000296098 FAM223AQ8IWN6 122 aa18.53■□□□□ 0.56
TRIM54-201ENST00000296098 BORCS7Q96B45 105 aa18.53■□□□□ 0.56
TRIM54-201ENST00000296098 PRR25Q96S07 402 aa18.53■□□□□ 0.56
TRIM54-201ENST00000296098 VAMP8Q9BV40 100 aa18.52■□□□□ 0.56
TRIM54-201ENST00000296098 A0A1B0GW15 77 aa18.52■□□□□ 0.55
TRIM54-201ENST00000296098 C3orf79P0CE67 100 aa18.52■□□□□ 0.55
TRIM54-201ENST00000296098 ATP6V0BQ99437 205 aa18.52■□□□□ 0.55
TRIM54-201ENST00000296098 IGSF10Q6WRI0 2623 aa18.51■□□□□ 0.55
TRIM54-201ENST00000296098 M0R2Z0 102 aa18.51■□□□□ 0.55
TRIM54-201ENST00000296098 Q8TAT8 98 aa18.51■□□□□ 0.55
TRIM54-201ENST00000296098 METTL26Q96S19 204 aa18.51■□□□□ 0.55
TRIM54-201ENST00000296098 VGLL1Q99990 258 aa18.51■□□□□ 0.55
TRIM54-201ENST00000296098 LINC00527Q9UJ94 153 aa18.51■□□□□ 0.55
TRIM54-201ENST00000296098 DOPEY1Q5JWR5 2465 aa18.51■□□□□ 0.55
TRIM54-201ENST00000296098 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP18.5■□□□□ 0.55
TRIM54-201ENST00000296098 TMEM189A5PLL7 270 aa18.5■□□□□ 0.55
TRIM54-201ENST00000296098 TDRG1Q3Y452 100 aa18.5■□□□□ 0.55
TRIM54-201ENST00000296098 LCN12Q6JVE5 192 aa18.5■□□□□ 0.55
TRIM54-201ENST00000296098 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa18.5■□□□□ 0.55
TRIM54-201ENST00000296098 GATD1Q8NB37 220 aa18.5■□□□□ 0.55
TRIM54-201ENST00000296098 C20orf144Q9BQM9 153 aa18.5■□□□□ 0.55
TRIM54-201ENST00000296098 NDFIP1Q9BT67 221 aa18.5■□□□□ 0.55
TRIM54-201ENST00000296098 IGHV3-66A0A0C4DH42 116 aa18.5■□□□□ 0.55
TRIM54-201ENST00000296098 URB1-AS1Q96HZ7 61 aa18.5■□□□□ 0.55
TRIM54-201ENST00000296098 SLC50A1Q9BRV3 221 aa18.5■□□□□ 0.55
TRIM54-201ENST00000296098 TPPP3Q9BW30 176 aa18.5■□□□□ 0.55
TRIM54-201ENST00000296098 TRGV3P03979 118 aa18.49■□□□□ 0.55
TRIM54-201ENST00000296098 LY6EQ16553 131 aa18.49■□□□□ 0.55
TRIM54-201ENST00000296098 PAM16Q9Y3D7 125 aa18.49■□□□□ 0.55
TRIM54-201ENST00000296098 FAM181BA6NEQ2 426 aa18.48■□□□□ 0.55
TRIM54-201ENST00000296098 H3BUX3 64 aa18.48■□□□□ 0.55
TRIM54-201ENST00000296098 LURAP1LQ8IV03 231 aa18.48■□□□□ 0.55
TRIM54-201ENST00000296098 TMSB15BA0A087X1C1 80 aa18.47■□□□□ 0.55
TRIM54-201ENST00000296098 A6NDX4 124 aa18.47■□□□□ 0.55
TRIM54-201ENST00000296098 IGF1P05019 195 aa18.47■□□□□ 0.55
TRIM54-201ENST00000296098 CHCHD1Q96BP2 118 aaKnown RBP18.47■□□□□ 0.55
TRIM54-201ENST00000296098 IGHV3OR16-13A0A075B7E8 117 aa18.47■□□□□ 0.55
TRIM54-201ENST00000296098 IGHV3-74A0A0B4J1X5 117 aa18.47■□□□□ 0.55
TRIM54-201ENST00000296098 CACNA1BQ00975 2339 aa18.47■□□□□ 0.55
TRIM54-201ENST00000296098 SPTAN1Q13813 2472 aaKnown RBP18.47■□□□□ 0.55
TRIM54-201ENST00000296098 SVEP1Q4LDE5 3571 aa18.47■□□□□ 0.55
TRIM54-201ENST00000296098 M0QZ24 198 aa18.46■□□□□ 0.55
TRIM54-201ENST00000296098 ZNF207O43670 478 aaKnown RBP18.46■□□□□ 0.55
TRIM54-201ENST00000296098 BMI1P35226 326 aa18.46■□□□□ 0.55
TRIM54-201ENST00000296098 RNF182Q8N6D2 247 aa18.46■□□□□ 0.55
TRIM54-201ENST00000296098 B4DSR2 109 aa18.45■□□□□ 0.54
TRIM54-201ENST00000296098 DSCR9P59020 149 aa18.45■□□□□ 0.54
TRIM54-201ENST00000296098 HIF1ANQ9NWT6 349 aa18.45■□□□□ 0.54
TRIM54-201ENST00000296098 U3KQE9 123 aa18.45■□□□□ 0.54
TRIM54-201ENST00000296098 IGHV3-49A0A0A0MS15 119 aa18.45■□□□□ 0.54
TRIM54-201ENST00000296098 RBAKDNA6NC62 111 aa18.45■□□□□ 0.54
TRIM54-201ENST00000296098 LYZL1Q6UWQ5 148 aa18.45■□□□□ 0.54
TRIM54-201ENST00000296098 M0QZK8 103 aa18.44■□□□□ 0.54
TRIM54-201ENST00000296098 IGHG2P01859 326 aa18.44■□□□□ 0.54
TRIM54-201ENST00000296098 ARL3P36405 182 aa18.44■□□□□ 0.54
TRIM54-201ENST00000296098 ZNF80P51504 273 aaPredicted RBP18.44■□□□□ 0.54
TRIM54-201ENST00000296098 RPS20P60866 119 aaKnown RBP18.44■□□□□ 0.54
TRIM54-201ENST00000296098 LBHQ53QV2 105 aaPredicted RBP18.44■□□□□ 0.54
TRIM54-201ENST00000296098 PRAC2D3DTV9 90 aa18.44■□□□□ 0.54
TRIM54-201ENST00000296098 NRGNQ92686 78 aa18.44■□□□□ 0.54
TRIM54-201ENST00000296098 ERCC8Q13216 396 aa18.43■□□□□ 0.54
TRIM54-201ENST00000296098 ZNF493Q6ZR52 646 aa18.43■□□□□ 0.54
TRIM54-201ENST00000296098 COL12A1Q99715 3063 aa18.43■□□□□ 0.54
TRIM54-201ENST00000296098 H3BUA1 57 aa18.42■□□□□ 0.54
TRIM54-201ENST00000296098 EBLN2Q6P2I7 272 aa18.42■□□□□ 0.54
TRIM54-201ENST00000296098 MIEN1Q9BRT3 115 aa18.42■□□□□ 0.54
TRIM54-201ENST00000296098 IGHV1-24A0A0C4DH33 117 aa18.42■□□□□ 0.54
TRIM54-201ENST00000296098 LINC00614P0C842 121 aa18.42■□□□□ 0.54
TRIM54-201ENST00000296098 BTF3P20290 206 aaKnown RBP18.42■□□□□ 0.54
TRIM54-201ENST00000296098 C8orf86Q6ZUL3 223 aa18.42■□□□□ 0.54
TRIM54-201ENST00000296098 C2orf88Q9BSF0 95 aa18.42■□□□□ 0.54
TRIM54-201ENST00000296098 BRI3O95415 125 aa18.41■□□□□ 0.54
TRIM54-201ENST00000296098 SRSF2Q01130 221 aaKnown RBP18.41■□□□□ 0.54
TRIM54-201ENST00000296098 PMCHL1Q16048 86 aa18.41■□□□□ 0.54
TRIM54-201ENST00000296098 DMRTA1Q5VZB9 504 aa18.41■□□□□ 0.54
TRIM54-201ENST00000296098 MRPL53Q96EL3 112 aaKnown RBP18.41■□□□□ 0.54
TRIM54-201ENST00000296098 USP9XQ93008 2570 aaPredicted RBP18.41■□□□□ 0.54
TRIM54-201ENST00000296098 TRAV8-2A0A0B4J237 113 aa18.4■□□□□ 0.54
TRIM54-201ENST00000296098 C2orf70A6NJV1 201 aa18.4■□□□□ 0.54
TRIM54-201ENST00000296098 PRB1P04280 392 aa18.4■□□□□ 0.54
TRIM54-201ENST00000296098 SLC25A16P16260 332 aa18.4■□□□□ 0.54
TRIM54-201ENST00000296098 RAB4AP20338 218 aa18.4■□□□□ 0.54
TRIM54-201ENST00000296098 PPIFP30405 207 aaKnown RBP18.4■□□□□ 0.54
TRIM54-201ENST00000296098 CTRLP40313 264 aa18.4■□□□□ 0.54
TRIM54-201ENST00000296098 EREGO14944 169 aa18.4■□□□□ 0.54
TRIM54-201ENST00000296098 GATA3P23771 443 aa18.4■□□□□ 0.54
TRIM54-201ENST00000296098 FER1L6-AS1Q8NA97 138 aa18.4■□□□□ 0.54
TRIM54-201ENST00000296098 USMG5Q96IX5 58 aa18.4■□□□□ 0.54
TRIM54-201ENST00000296098 CLEC5AQ9NY25 188 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms