RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 ARID1AO14497 2285 aa10.33□□□□□ -0.76
USP40-201ENST00000251722 DEFB121Q5J5C9 76 aa10.33□□□□□ -0.76
USP40-201ENST00000251722 ZNF833PQ6ZTB9 187 aa10.33□□□□□ -0.76
USP40-201ENST00000251722 ATP6V0E2Q8NHE4 81 aa10.33□□□□□ -0.76
USP40-201ENST00000251722 ACYP1P07311 99 aa10.32□□□□□ -0.76
USP40-201ENST00000251722 TCF15Q12870 199 aa10.32□□□□□ -0.76
USP40-201ENST00000251722 RHPN1-AS1Q9BWJ2 59 aa10.32□□□□□ -0.76
USP40-201ENST00000251722 GGTLC3B5MD39 225 aa10.32□□□□□ -0.76
USP40-201ENST00000251722 RNASE7Q9H1E1 156 aaKnown RBP10.32□□□□□ -0.76
USP40-201ENST00000251722 BRWD1Q9NSI6 2320 aa10.32□□□□□ -0.76
USP40-201ENST00000251722 ATP5G1P05496 136 aa10.32□□□□□ -0.76
USP40-201ENST00000251722 ZDBF2Q9HCK1 2354 aa10.32□□□□□ -0.76
USP40-201ENST00000251722 LYPD2Q6UXB3 125 aa10.32□□□□□ -0.76
USP40-201ENST00000251722 DPH3P1Q9H4G8 78 aa10.32□□□□□ -0.76
USP40-201ENST00000251722 NUP210Q8TEM1 1887 aaPredicted RBP10.32□□□□□ -0.76
USP40-201ENST00000251722 CD28P10747 220 aa10.31□□□□□ -0.76
USP40-201ENST00000251722 M0R2P5 195 aa10.31□□□□□ -0.76
USP40-201ENST00000251722 WISP1O95388 367 aa10.31□□□□□ -0.76
USP40-201ENST00000251722 PYYP10082 97 aa10.31□□□□□ -0.76
USP40-201ENST00000251722 PKIGQ9Y2B9 76 aa10.31□□□□□ -0.76
USP40-201ENST00000251722 ATOX1O00244 68 aa10.31□□□□□ -0.76
USP40-201ENST00000251722 TCRAP04437 139 aa10.31□□□□□ -0.76
USP40-201ENST00000251722 PRR30Q53SZ7 412 aaPredicted RBP10.31□□□□□ -0.76
USP40-201ENST00000251722 FAM110AQ9BQ89 295 aa10.31□□□□□ -0.76
USP40-201ENST00000251722 NDUFA4O00483 81 aa10.31□□□□□ -0.76
USP40-201ENST00000251722 SHANK2-AS3Q9BTD1 123 aa10.31□□□□□ -0.76
USP40-201ENST00000251722 PROK2Q9HC23 129 aa10.31□□□□□ -0.76
USP40-201ENST00000251722 IGKV1D-8A0A087WSZ0 117 aa10.3□□□□□ -0.76
USP40-201ENST00000251722 GLMPQ8WWB7 406 aa10.3□□□□□ -0.76
USP40-201ENST00000251722 TOMM7Q9P0U1 55 aa10.3□□□□□ -0.76
USP40-201ENST00000251722 IGHV3OR16-8A0A075B7F1 116 aa10.3□□□□□ -0.76
USP40-201ENST00000251722 A0A1W2PPI3 338 aa10.3□□□□□ -0.76
USP40-201ENST00000251722 H3BMG7 143 aa10.3□□□□□ -0.76
USP40-201ENST00000251722 ANXA2RQ3ZCQ2 193 aa10.3□□□□□ -0.76
USP40-201ENST00000251722 C20orf173Q96LM9 149 aa10.3□□□□□ -0.76
USP40-201ENST00000251722 PRSS29PA6NIE9 313 aa10.3□□□□□ -0.76
USP40-201ENST00000251722 VCYO14598 125 aa10.3□□□□□ -0.76
USP40-201ENST00000251722 RNASE2P10153 161 aaKnown RBP10.3□□□□□ -0.76
USP40-201ENST00000251722 KIAA1671Q9BY89 1806 aa10.3□□□□□ -0.76
USP40-201ENST00000251722 IGHG4P01861 327 aa10.3□□□□□ -0.76
USP40-201ENST00000251722 NPC2P61916 151 aa10.3□□□□□ -0.76
USP40-201ENST00000251722 RMI2Q96E14 147 aa10.3□□□□□ -0.76
USP40-201ENST00000251722 KNCNA6PVL3 124 aa10.29□□□□□ -0.76
USP40-201ENST00000251722 IGKV1-5P01602 117 aa10.29□□□□□ -0.76
USP40-201ENST00000251722 TFF1P04155 84 aa10.29□□□□□ -0.76
USP40-201ENST00000251722 NUP35Q8NFH5 326 aa10.29□□□□□ -0.76
USP40-201ENST00000251722 PLXNA4Q9HCM2 1894 aa10.29□□□□□ -0.76
USP40-201ENST00000251722 PMS2P5A8MQ11 134 aa10.29□□□□□ -0.76
USP40-201ENST00000251722 PLEKHB2Q96CS7 222 aa10.29□□□□□ -0.76
USP40-201ENST00000251722 TAX1BP3O14907 124 aa10.29□□□□□ -0.76
USP40-201ENST00000251722 SYNJ2BPP57105 145 aa10.29□□□□□ -0.76
USP40-201ENST00000251722 RASL10AQ92737 203 aa10.29□□□□□ -0.76
USP40-201ENST00000251722 FAM215AQ9Y5M1 114 aa10.29□□□□□ -0.76
USP40-201ENST00000251722 A4D1N5 150 aa10.29□□□□□ -0.76
USP40-201ENST00000251722 RBM3P98179 157 aaKnown RBP10.29□□□□□ -0.76
USP40-201ENST00000251722 SRSF2Q01130 221 aaKnown RBP10.28□□□□□ -0.76
USP40-201ENST00000251722 LAGE3Q14657 143 aa10.28□□□□□ -0.76
USP40-201ENST00000251722 Q6ZVH6 145 aa10.28□□□□□ -0.76
USP40-201ENST00000251722 GFRA4Q9GZZ7 299 aa10.28□□□□□ -0.76
USP40-201ENST00000251722 APC2O95996 2303 aa10.28□□□□□ -0.76
USP40-201ENST00000251722 RPL32P62910 135 aaKnown RBP10.28□□□□□ -0.76
USP40-201ENST00000251722 C11orf44Q8N8P7 122 aa10.28□□□□□ -0.76
USP40-201ENST00000251722 TRGV1A0A0A0MS02 117 aa10.28□□□□□ -0.76
USP40-201ENST00000251722 SRRM4A7MD48 611 aaKnown RBP10.28□□□□□ -0.76
USP40-201ENST00000251722 DAZAP2Q15038 168 aaPredicted RBP10.28□□□□□ -0.76
USP40-201ENST00000251722 C10orf55Q5SWW7 151 aa10.28□□□□□ -0.76
USP40-201ENST00000251722 LINC00527Q9UJ94 153 aa10.28□□□□□ -0.76
USP40-201ENST00000251722 DEFB113Q30KQ7 82 aa10.27□□□□□ -0.76
USP40-201ENST00000251722 IL17RELQ6ZVW7 336 aa10.27□□□□□ -0.76
USP40-201ENST00000251722 SCRT1Q9BWW7 348 aa10.27□□□□□ -0.76
USP40-201ENST00000251722 SVILO95425 2214 aa10.27□□□□□ -0.76
USP40-201ENST00000251722 TRAV12-3A0A0B4J271 114 aa10.27□□□□□ -0.77
USP40-201ENST00000251722 F5H768 121 aa10.27□□□□□ -0.77
USP40-201ENST00000251722 RBMY1FQ15415 496 aaKnown RBP10.27□□□□□ -0.77
USP40-201ENST00000251722 TRAV13-1A0A0B4J241 112 aa10.27□□□□□ -0.77
USP40-201ENST00000251722 PSCAO43653 123 aa10.27□□□□□ -0.77
USP40-201ENST00000251722 MRPL23Q16540 153 aaKnown RBP10.27□□□□□ -0.77
USP40-201ENST00000251722 LINC00473A8K010 186 aa10.27□□□□□ -0.77
USP40-201ENST00000251722 LOXP28300 417 aaPredicted RBP10.27□□□□□ -0.77
USP40-201ENST00000251722 GBF1Q92538 1859 aa10.26□□□□□ -0.77
USP40-201ENST00000251722 RNASE1P07998 156 aaKnown RBP10.26□□□□□ -0.77
USP40-201ENST00000251722 RPL15P61313 204 aaKnown RBP10.26□□□□□ -0.77
USP40-201ENST00000251722 CEND1Q8N111 149 aa10.26□□□□□ -0.77
USP40-201ENST00000251722 SPATA25Q9BR10 227 aa10.26□□□□□ -0.77
USP40-201ENST00000251722 PRB3Q04118 309 aaPredicted RBP10.26□□□□□ -0.77
USP40-201ENST00000251722 DKK4Q9UBT3 224 aa10.26□□□□□ -0.77
USP40-201ENST00000251722 TMEM75Q8N9X5 138 aa10.26□□□□□ -0.77
USP40-201ENST00000251722 TMEM14BQ9NUH8 114 aa10.26□□□□□ -0.77
USP40-201ENST00000251722 ANAPC10Q9UM13 185 aa10.26□□□□□ -0.77
USP40-201ENST00000251722 ATP6V0E1O15342 81 aa10.25□□□□□ -0.77
USP40-201ENST00000251722 FOXI1Q12951 378 aa10.25□□□□□ -0.77
USP40-201ENST00000251722 SS18Q15532 418 aa10.25□□□□□ -0.77
USP40-201ENST00000251722 ARTNQ5T4W7 220 aa10.25□□□□□ -0.77
USP40-201ENST00000251722 FOXI2Q6ZQN5 318 aa10.25□□□□□ -0.77
USP40-201ENST00000251722 OR11H6Q8NGC7 330 aa10.25□□□□□ -0.77
USP40-201ENST00000251722 OVOL3O00110 214 aa10.25□□□□□ -0.77
USP40-201ENST00000251722 NDUFA4L2Q9NRX3 87 aa10.25□□□□□ -0.77
USP40-201ENST00000251722 IGKV2-40A0A087WW87 121 aaPredicted RBP10.24□□□□□ -0.77
USP40-201ENST00000251722 IGKV2D-40P01614 121 aaPredicted RBP10.24□□□□□ -0.77
USP40-201ENST00000251722 RPL35AP18077 110 aaKnown RBP10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms