RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 PTTG2Q9NZH5 202 aa10.39□□□□□ -0.75
SYNE2-228ENST00000639659 SYNGR2O43760 224 aa10.38□□□□□ -0.75
SYNE2-228ENST00000639659 PITX3O75364 302 aa10.38□□□□□ -0.75
SYNE2-228ENST00000639659 HYPMO75409 117 aa10.38□□□□□ -0.75
SYNE2-228ENST00000639659 LINC00315P59091 139 aa10.38□□□□□ -0.75
SYNE2-228ENST00000639659 KIR3DS1Q14943 382 aa10.38□□□□□ -0.75
SYNE2-228ENST00000639659 ZNF493Q6ZR52 646 aa10.38□□□□□ -0.75
SYNE2-228ENST00000639659 CYP2G1PQ6ZSU1 146 aa10.38□□□□□ -0.75
SYNE2-228ENST00000639659 MRPS16Q9Y3D3 137 aaKnown RBP10.38□□□□□ -0.75
SYNE2-228ENST00000639659 SNURFLB1AK76 121 aa10.37□□□□□ -0.75
SYNE2-228ENST00000639659 PRSS46E5RG02 174 aa10.37□□□□□ -0.75
SYNE2-228ENST00000639659 H7BYZ3 331 aa10.37□□□□□ -0.75
SYNE2-228ENST00000639659 LINC00869P0C866 280 aa10.37□□□□□ -0.75
SYNE2-228ENST00000639659 ANXA7P20073 488 aaKnown RBP10.37□□□□□ -0.75
SYNE2-228ENST00000639659 BTF3P20290 206 aaKnown RBP10.37□□□□□ -0.75
SYNE2-228ENST00000639659 STRAPQ9Y3F4 350 aaKnown RBP10.37□□□□□ -0.75
SYNE2-228ENST00000639659 DMBT1Q9UGM3 2413 aaPredicted RBP10.36□□□□□ -0.75
SYNE2-228ENST00000639659 PIGBOS1A0A0B4J2F0 54 aa10.36□□□□□ -0.75
SYNE2-228ENST00000639659 DUXBA0A1W2PPF3 345 aa10.36□□□□□ -0.75
SYNE2-228ENST00000639659 A0A1W2PPQ1 181 aa10.36□□□□□ -0.75
SYNE2-228ENST00000639659 CTDSPLO15194 276 aa10.36□□□□□ -0.75
SYNE2-228ENST00000639659 HOXB5P09067 269 aa10.36□□□□□ -0.75
SYNE2-228ENST00000639659 RRAS2P62070 204 aaPredicted RBP10.36□□□□□ -0.75
SYNE2-228ENST00000639659 SPCS2Q15005 226 aa10.36□□□□□ -0.75
SYNE2-228ENST00000639659 UPK3BQ9BT76 320 aa10.36□□□□□ -0.75
SYNE2-228ENST00000639659 TMPRSS5Q9H3S3 457 aa10.36□□□□□ -0.75
SYNE2-228ENST00000639659 H3BTX0 84 aa10.35□□□□□ -0.75
SYNE2-228ENST00000639659 EREGO14944 169 aa10.35□□□□□ -0.75
SYNE2-228ENST00000639659 Q5VSD8 79 aa10.35□□□□□ -0.75
SYNE2-228ENST00000639659 GFI1BQ5VTD9 330 aa10.35□□□□□ -0.75
SYNE2-228ENST00000639659 ZNF503Q96F45 646 aa10.35□□□□□ -0.75
SYNE2-228ENST00000639659 ARL6Q9H0F7 186 aa10.35□□□□□ -0.75
SYNE2-228ENST00000639659 A0A087X0K7 114 aa10.34□□□□□ -0.75
SYNE2-228ENST00000639659 PMS2P5A8MQ11 134 aa10.34□□□□□ -0.75
SYNE2-228ENST00000639659 ERVFC1-1P60608 527 aa10.34□□□□□ -0.75
SYNE2-228ENST00000639659 FRZBQ92765 325 aa10.34□□□□□ -0.75
SYNE2-228ENST00000639659 RABL2BQ9UNT1 228 aa10.34□□□□□ -0.75
SYNE2-228ENST00000639659 TRGV2A0A075B6R0 118 aa10.33□□□□□ -0.76
SYNE2-228ENST00000639659 TRAV12-3A0A0B4J271 114 aa10.33□□□□□ -0.76
SYNE2-228ENST00000639659 SMIM18P0DKX4 95 aa10.33□□□□□ -0.76
SYNE2-228ENST00000639659 SLC25A6P12236 298 aa10.33□□□□□ -0.76
SYNE2-228ENST00000639659 FAUP35544 74 aaKnown RBP10.33□□□□□ -0.76
SYNE2-228ENST00000639659 TMEM128Q5BJH2 165 aa10.33□□□□□ -0.76
SYNE2-228ENST00000639659 Q6ZTI0 123 aa10.33□□□□□ -0.76
SYNE2-228ENST00000639659 S100A7AQ86SG5 101 aa10.33□□□□□ -0.76
SYNE2-228ENST00000639659 PSENENQ9NZ42 101 aa10.33□□□□□ -0.76
SYNE2-228ENST00000639659 RSL24D1Q9UHA3 163 aaKnown RBP10.33□□□□□ -0.76
SYNE2-228ENST00000639659 CCNKO75909 580 aa10.32□□□□□ -0.76
SYNE2-228ENST00000639659 POLR2GP62487 172 aaKnown RBP eCLIP10.32□□□□□ -0.76
SYNE2-228ENST00000639659 SLC38A11Q08AI6 406 aa10.32□□□□□ -0.76
SYNE2-228ENST00000639659 PPP1R1AQ13522 171 aa10.32□□□□□ -0.76
SYNE2-228ENST00000639659 LCN15Q6UWW0 184 aa10.32□□□□□ -0.76
SYNE2-228ENST00000639659 LYPD1Q8N2G4 141 aa10.32□□□□□ -0.76
SYNE2-228ENST00000639659 LINC00612Q8N6U2 182 aa10.32□□□□□ -0.76
SYNE2-228ENST00000639659 C20orf144Q9BQM9 153 aa10.32□□□□□ -0.76
SYNE2-228ENST00000639659 ARV1Q9H2C2 271 aa10.32□□□□□ -0.76
SYNE2-228ENST00000639659 RABL2AQ9UBK7 228 aaPredicted RBP10.32□□□□□ -0.76
SYNE2-228ENST00000639659 A0A096LPF7 62 aa10.31□□□□□ -0.76
SYNE2-228ENST00000639659 PRAC2D3DTV9 90 aa10.31□□□□□ -0.76
SYNE2-228ENST00000639659 SIVA1O15304 175 aa10.31□□□□□ -0.76
SYNE2-228ENST00000639659 SSSCA1O60232 199 aa10.31□□□□□ -0.76
SYNE2-228ENST00000639659 DNAH10OSP0CZ25 163 aa10.31□□□□□ -0.76
SYNE2-228ENST00000639659 Q6ZRN7 208 aaPredicted RBP10.31□□□□□ -0.76
SYNE2-228ENST00000639659 MCFD2Q8NI22 146 aa10.31□□□□□ -0.76
SYNE2-228ENST00000639659 SLC50A1Q9BRV3 221 aa10.31□□□□□ -0.76
SYNE2-228ENST00000639659 ZNF331Q9NQX6 463 aaPredicted RBP10.31□□□□□ -0.76
SYNE2-228ENST00000639659 PGPEP1Q9NXJ5 209 aa10.31□□□□□ -0.76
SYNE2-228ENST00000639659 TNFRSF18Q9Y5U5 241 aa10.31□□□□□ -0.76
SYNE2-228ENST00000639659 FABP12A6NFH5 140 aa10.3□□□□□ -0.76
SYNE2-228ENST00000639659 H3BNG1 76 aa10.3□□□□□ -0.76
SYNE2-228ENST00000639659 SLC17A3O00476 420 aa10.3□□□□□ -0.76
SYNE2-228ENST00000639659 NXPH4O95158 308 aa10.3□□□□□ -0.76
SYNE2-228ENST00000639659 SFT2D2O95562 160 aa10.3□□□□□ -0.76
SYNE2-228ENST00000639659 IFNA5P01569 189 aa10.3□□□□□ -0.76
SYNE2-228ENST00000639659 SMR3BP02814 79 aaPredicted RBP10.3□□□□□ -0.76
SYNE2-228ENST00000639659 XGP55808 180 aa10.3□□□□□ -0.76
SYNE2-228ENST00000639659 SELENOTP62341 195 aa10.3□□□□□ -0.76
SYNE2-228ENST00000639659 PATE2Q6UY27 113 aa10.3□□□□□ -0.76
SYNE2-228ENST00000639659 LRTM2Q8N967 370 aa10.3□□□□□ -0.76
SYNE2-228ENST00000639659 CCDC59Q9P031 241 aaKnown RBP10.3□□□□□ -0.76
SYNE2-228ENST00000639659 MGAT4CQ9UBM8 478 aa10.3□□□□□ -0.76
SYNE2-228ENST00000639659 TRGV1A0A0A0MS02 117 aa10.29□□□□□ -0.76
SYNE2-228ENST00000639659 COX7A2P2O60397 106 aa10.29□□□□□ -0.76
SYNE2-228ENST00000639659 SCGB1D2O95969 90 aa10.29□□□□□ -0.76
SYNE2-228ENST00000639659 METTL15P1P0C7V9 234 aa10.29□□□□□ -0.76
SYNE2-228ENST00000639659 CXCL2P19875 107 aa10.29□□□□□ -0.76
SYNE2-228ENST00000639659 LEPP41159 167 aa10.29□□□□□ -0.76
SYNE2-228ENST00000639659 PLP1P60201 277 aa10.29□□□□□ -0.76
SYNE2-228ENST00000639659 HAMPP81172 84 aa10.29□□□□□ -0.76
SYNE2-228ENST00000639659 LINC00305Q7Z4B0 112 aa10.29□□□□□ -0.76
SYNE2-228ENST00000639659 TOMM5Q8N4H5 51 aa10.29□□□□□ -0.76
SYNE2-228ENST00000639659 VSIG2Q96IQ7 327 aa10.29□□□□□ -0.76
SYNE2-228ENST00000639659 MDFICQ9P1T7 246 aa10.29□□□□□ -0.76
SYNE2-228ENST00000639659 LINC00854A0A1B0GVQ3 168 aa10.28□□□□□ -0.76
SYNE2-228ENST00000639659 GOSR2O14653 212 aa10.28□□□□□ -0.76
SYNE2-228ENST00000639659 MRPS12O15235 138 aaKnown RBP10.28□□□□□ -0.76
SYNE2-228ENST00000639659 IGHV3-53P01767 116 aa10.28□□□□□ -0.76
SYNE2-228ENST00000639659 PYDC2Q56P42 97 aa10.28□□□□□ -0.76
SYNE2-228ENST00000639659 BPIFA4PQ86YQ2 179 aa10.28□□□□□ -0.76
SYNE2-228ENST00000639659 GSN-AS1Q9NRJ2 163 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms