RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 BMPR1BO00238 502 aa14.33□□□□□ -0.11
CLN3-263ENST00000637871 PSG9Q00887 426 aa14.33□□□□□ -0.11
CLN3-263ENST00000637871 OR8I2Q8N0Y5 310 aa14.33□□□□□ -0.11
CLN3-263ENST00000637871 GPR61Q9BZJ8 451 aa14.33□□□□□ -0.11
CLN3-263ENST00000637871 SERTAD4Q9NUC0 356 aa14.33□□□□□ -0.11
CLN3-263ENST00000637871 MXRA5Q9NR99 2828 aa14.33□□□□□ -0.11
CLN3-263ENST00000637871 FN1P02751 2386 aaKnown RBP14.33□□□□□ -0.12
CLN3-263ENST00000637871 TRBV7-1A0A0A6YYK4 115 aa14.33□□□□□ -0.12
CLN3-263ENST00000637871 J3QLI3 93 aa14.33□□□□□ -0.12
CLN3-263ENST00000637871 MRPS12O15235 138 aaKnown RBP14.33□□□□□ -0.12
CLN3-263ENST00000637871 ZNF253O75346 499 aa14.33□□□□□ -0.12
CLN3-263ENST00000637871 BRI3O95415 125 aa14.33□□□□□ -0.12
CLN3-263ENST00000637871 CTSGP08311 255 aa14.33□□□□□ -0.12
CLN3-263ENST00000637871 IGHV4-38-2P0DP08 117 aa14.33□□□□□ -0.12
CLN3-263ENST00000637871 LEMD1Q68G75 181 aa14.33□□□□□ -0.12
CLN3-263ENST00000637871 ZNF502Q8TBZ5 544 aa14.33□□□□□ -0.12
CLN3-263ENST00000637871 LINC00479Q96M42 142 aa14.33□□□□□ -0.12
CLN3-263ENST00000637871 RABAC1Q9UI14 185 aa14.33□□□□□ -0.12
CLN3-263ENST00000637871 ZFP30Q9Y2G7 519 aa14.33□□□□□ -0.12
CLN3-263ENST00000637871 CUBNO60494 3623 aa14.33□□□□□ -0.12
CLN3-263ENST00000637871 TRAV34A0A0B4J273 112 aa14.32□□□□□ -0.12
CLN3-263ENST00000637871 FAM231BA6NCW3 169 aa14.32□□□□□ -0.12
CLN3-263ENST00000637871 ATP6V0E1O15342 81 aa14.32□□□□□ -0.12
CLN3-263ENST00000637871 HLA-DQA1P01909 254 aa14.32□□□□□ -0.12
CLN3-263ENST00000637871 GNG5P63218 68 aa14.32□□□□□ -0.12
CLN3-263ENST00000637871 TMEM75Q8N9X5 138 aa14.32□□□□□ -0.12
CLN3-263ENST00000637871 NUDT10Q8NFP7 164 aa14.32□□□□□ -0.12
CLN3-263ENST00000637871 WIPF2Q8TF74 440 aaPredicted RBP14.32□□□□□ -0.12
CLN3-263ENST00000637871 TMEM18Q96B42 140 aa14.32□□□□□ -0.12
CLN3-263ENST00000637871 NUDT11Q96G61 164 aa14.32□□□□□ -0.12
CLN3-263ENST00000637871 HSPB9Q9BQS6 159 aa14.32□□□□□ -0.12
CLN3-263ENST00000637871 AAMDCQ9H7C9 122 aa14.32□□□□□ -0.12
CLN3-263ENST00000637871 NAT8BQ9UHF3 227 aa14.32□□□□□ -0.12
CLN3-263ENST00000637871 SOX21Q9Y651 276 aaPredicted RBP14.32□□□□□ -0.12
CLN3-263ENST00000637871 USF2Q15853 346 aaPredicted RBP14.31□□□□□ -0.12
CLN3-263ENST00000637871 ATP5L2Q7Z4Y8 100 aa14.31□□□□□ -0.12
CLN3-263ENST00000637871 OR4B1Q8NGF8 309 aa14.31□□□□□ -0.12
CLN3-263ENST00000637871 OR10D4PQ8NGN7 298 aa14.31□□□□□ -0.12
CLN3-263ENST00000637871 TSKUQ8WUA8 353 aa14.31□□□□□ -0.12
CLN3-263ENST00000637871 EEF1AKMT3Q96AZ1 226 aa14.31□□□□□ -0.12
CLN3-263ENST00000637871 ZNF414Q96IQ9 312 aa14.31□□□□□ -0.12
CLN3-263ENST00000637871 A8MWL6 223 aa14.3□□□□□ -0.12
CLN3-263ENST00000637871 AMY1AP04745 511 aa14.3□□□□□ -0.12
CLN3-263ENST00000637871 BRD3OSQ6XYD6 125 aa14.3□□□□□ -0.12
CLN3-263ENST00000637871 DAZAP1Q96EP5 407 aaKnown RBP14.3□□□□□ -0.12
CLN3-263ENST00000637871 HIST1H2BLQ99880 126 aa14.3□□□□□ -0.12
CLN3-263ENST00000637871 GFRA4Q9GZZ7 299 aa14.3□□□□□ -0.12
CLN3-263ENST00000637871 MRPL18Q9H0U6 180 aaKnown RBP14.3□□□□□ -0.12
CLN3-263ENST00000637871 NIT2Q9NQR4 276 aa14.3□□□□□ -0.12
CLN3-263ENST00000637871 ZNF331Q9NQX6 463 aaPredicted RBP14.3□□□□□ -0.12
CLN3-263ENST00000637871 FAM223BA6NKX1 122 aa14.3□□□□□ -0.12
CLN3-263ENST00000637871 H3BUA1 57 aa14.3□□□□□ -0.12
CLN3-263ENST00000637871 CSN1S1P47710 185 aa14.3□□□□□ -0.12
CLN3-263ENST00000637871 RHOGP84095 191 aa14.3□□□□□ -0.12
CLN3-263ENST00000637871 ECSCRQ19T08 205 aa14.3□□□□□ -0.12
CLN3-263ENST00000637871 SIGLEC15Q6ZMC9 328 aa14.3□□□□□ -0.12
CLN3-263ENST00000637871 FAM223AQ8IWN6 122 aa14.3□□□□□ -0.12
CLN3-263ENST00000637871 PACRGQ96M98 296 aaPredicted RBP14.3□□□□□ -0.12
CLN3-263ENST00000637871 PRSS22Q9GZN4 317 aa14.3□□□□□ -0.12
CLN3-263ENST00000637871 SNURFLB1AK76 121 aa14.29□□□□□ -0.12
CLN3-263ENST00000637871 FABP4P15090 132 aa14.29□□□□□ -0.12
CLN3-263ENST00000637871 IER3P46695 156 aa14.29□□□□□ -0.12
CLN3-263ENST00000637871 C15orf32Q32M92 178 aa14.29□□□□□ -0.12
CLN3-263ENST00000637871 GFI1BQ5VTD9 330 aa14.29□□□□□ -0.12
CLN3-263ENST00000637871 OR2T8A6NH00 312 aa14.28□□□□□ -0.12
CLN3-263ENST00000637871 FSHBP01225 129 aa14.28□□□□□ -0.12
CLN3-263ENST00000637871 ADMP35318 185 aa14.28□□□□□ -0.12
CLN3-263ENST00000637871 RELQ04864 619 aaPredicted RBP14.28□□□□□ -0.12
CLN3-263ENST00000637871 Q0VG73 95 aa14.28□□□□□ -0.12
CLN3-263ENST00000637871 Q86TA4 180 aa14.28□□□□□ -0.12
CLN3-263ENST00000637871 PIFOQ8TCI5 191 aa14.28□□□□□ -0.12
CLN3-263ENST00000637871 RPP21Q9H633 154 aaKnown RBP14.28□□□□□ -0.12
CLN3-263ENST00000637871 C19orf71A6NCJ1 209 aa14.27□□□□□ -0.12
CLN3-263ENST00000637871 P01737 135 aa14.27□□□□□ -0.12
CLN3-263ENST00000637871 C1orf194Q5T5A4 169 aa14.27□□□□□ -0.12
CLN3-263ENST00000637871 RPH3ALQ9UNE2 315 aa14.27□□□□□ -0.12
CLN3-263ENST00000637871 TRAV41A0A0B4J266 112 aa14.26□□□□□ -0.13
CLN3-263ENST00000637871 IGF1P05019 195 aa14.26□□□□□ -0.13
CLN3-263ENST00000637871 ESDP10768 282 aa14.26□□□□□ -0.13
CLN3-263ENST00000637871 CRISP2P16562 243 aa14.26□□□□□ -0.13
CLN3-263ENST00000637871 CBLN1P23435 193 aa14.26□□□□□ -0.13
CLN3-263ENST00000637871 ATP5G2Q06055 141 aa14.26□□□□□ -0.13
CLN3-263ENST00000637871 C19orf54Q5BKX5 351 aa14.26□□□□□ -0.13
CLN3-263ENST00000637871 BCL6BQ8N143 479 aaPredicted RBP14.26□□□□□ -0.13
CLN3-263ENST00000637871 NHLRC2Q8NBF2 726 aa14.26□□□□□ -0.13
CLN3-263ENST00000637871 NIPBLQ6KC79 2804 aaeCLIP14.26□□□□□ -0.13
CLN3-263ENST00000637871 A6NDX4 124 aa14.26□□□□□ -0.13
CLN3-263ENST00000637871 NPIPB6E9PJ23 425 aa14.26□□□□□ -0.13
CLN3-263ENST00000637871 AMBPP02760 352 aa14.26□□□□□ -0.13
CLN3-263ENST00000637871 PAFAH1B2P68402 229 aa14.26□□□□□ -0.13
CLN3-263ENST00000637871 PSG3Q16557 428 aa14.26□□□□□ -0.13
CLN3-263ENST00000637871 PYY3Q5JQD4 70 aa14.26□□□□□ -0.13
CLN3-263ENST00000637871 TMEM136Q6ZRR5 245 aa14.26□□□□□ -0.13
CLN3-263ENST00000637871 GOLT1AQ6ZVE7 132 aa14.26□□□□□ -0.13
CLN3-263ENST00000637871 GBGT1Q8N5D6 347 aa14.26□□□□□ -0.13
CLN3-263ENST00000637871 TMEM160Q9NX00 188 aa14.26□□□□□ -0.13
CLN3-263ENST00000637871 ZNF580Q9UK33 172 aa14.26□□□□□ -0.13
CLN3-263ENST00000637871 DIRC3C9JPN6 131 aa14.25□□□□□ -0.13
CLN3-263ENST00000637871 CLEC3BP05452 202 aa14.25□□□□□ -0.13
CLN3-263ENST00000637871 PDZD11Q5EBL8 140 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms