RNA–Protein interactions for RNA: ENST00000631420.1

LIMS3-206, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 1,580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-206ENST00000631420 IGLV1-51P01701 117 aa11.11□□□□□ -0.63
LIMS3-206ENST00000631420 HBE1P02100 147 aa11.11□□□□□ -0.63
LIMS3-206ENST00000631420 TFPI2P48307 235 aa11.11□□□□□ -0.63
LIMS3-206ENST00000631420 CLLU1Q5K131 121 aa11.11□□□□□ -0.63
LIMS3-206ENST00000631420 RBPMS2Q6ZRY4 209 aaKnown RBP11.11□□□□□ -0.63
LIMS3-206ENST00000631420 MS4A6AQ9H2W1 248 aa11.11□□□□□ -0.63
LIMS3-206ENST00000631420 CMYA5Q8N3K9 4069 aa11.1□□□□□ -0.63
LIMS3-206ENST00000631420 DNHD1Q96M86 4753 aa11.1□□□□□ -0.63
LIMS3-206ENST00000631420 UBE2G2P60604 165 aa11.1□□□□□ -0.63
LIMS3-206ENST00000631420 C9orf66Q5T8R8 295 aa11.1□□□□□ -0.63
LIMS3-206ENST00000631420 NRN1Q9NPD7 142 aa11.1□□□□□ -0.63
LIMS3-206ENST00000631420 TMEM167BQ9NRX6 74 aa11.1□□□□□ -0.63
LIMS3-206ENST00000631420 PRB4P10163 310 aaPredicted RBP11.09□□□□□ -0.63
LIMS3-206ENST00000631420 HLA-DMBP28068 263 aa11.09□□□□□ -0.63
LIMS3-206ENST00000631420 RANP62826 216 aaKnown RBP11.09□□□□□ -0.63
LIMS3-206ENST00000631420 DCANP1Q8TF63 244 aa11.09□□□□□ -0.63
LIMS3-206ENST00000631420 GNG13Q9P2W3 67 aa11.09□□□□□ -0.63
LIMS3-206ENST00000631420 YTHDF2Q9Y5A9 579 aaKnown RBP11.09□□□□□ -0.63
LIMS3-206ENST00000631420 TRAV8-2A0A0B4J237 113 aa11.08□□□□□ -0.64
LIMS3-206ENST00000631420 DNASE2O00115 360 aaPredicted RBP11.08□□□□□ -0.64
LIMS3-206ENST00000631420 SOCS3O14543 225 aa11.08□□□□□ -0.64
LIMS3-206ENST00000631420 TSPAN4O14817 238 aa11.08□□□□□ -0.64
LIMS3-206ENST00000631420 CD5P06127 495 aa11.08□□□□□ -0.64
LIMS3-206ENST00000631420 PSMB3P49720 205 aa11.08□□□□□ -0.64
LIMS3-206ENST00000631420 FAM24BQ8N5W8 94 aa11.08□□□□□ -0.64
LIMS3-206ENST00000631420 MCRIP2Q9BUT9 160 aaKnown RBP11.08□□□□□ -0.64
LIMS3-206ENST00000631420 PAGE4O60829 102 aa11.07□□□□□ -0.64
LIMS3-206ENST00000631420 INSL3P51460 131 aa11.07□□□□□ -0.64
LIMS3-206ENST00000631420 GUK1Q16774 197 aa11.07□□□□□ -0.64
LIMS3-206ENST00000631420 HAGHQ16775 308 aa11.07□□□□□ -0.64
LIMS3-206ENST00000631420 OXLD1Q5BKU9 147 aa11.07□□□□□ -0.64
LIMS3-206ENST00000631420 EXOC3-AS1Q8N2X6 119 aa11.07□□□□□ -0.64
LIMS3-206ENST00000631420 ZNF331Q9NQX6 463 aaPredicted RBP11.07□□□□□ -0.64
LIMS3-206ENST00000631420 TRAV25A0A0B4J276 109 aa11.07□□□□□ -0.64
LIMS3-206ENST00000631420 FAM74A7A6NL05 159 aa11.07□□□□□ -0.64
LIMS3-206ENST00000631420 K7EQG2 157 aa11.07□□□□□ -0.64
LIMS3-206ENST00000631420 GUCA2BQ16661 112 aa11.07□□□□□ -0.64
LIMS3-206ENST00000631420 PRR31Q5SQ13 230 aa11.07□□□□□ -0.64
LIMS3-206ENST00000631420 RNF182Q8N6D2 247 aa11.07□□□□□ -0.64
LIMS3-206ENST00000631420 C16orf92Q96LL3 132 aa11.07□□□□□ -0.64
LIMS3-206ENST00000631420 RARRES2Q99969 163 aa11.07□□□□□ -0.64
LIMS3-206ENST00000631420 NOTCH3Q9UM47 2321 aa11.06□□□□□ -0.64
LIMS3-206ENST00000631420 SUMO1P63165 101 aaKnown RBP11.06□□□□□ -0.64
LIMS3-206ENST00000631420 PAFAH1B2P68402 229 aa11.06□□□□□ -0.64
LIMS3-206ENST00000631420 C20orf173Q96LM9 149 aa11.06□□□□□ -0.64
LIMS3-206ENST00000631420 Q9H3A6 140 aa11.06□□□□□ -0.64
LIMS3-206ENST00000631420 ZNF256Q9Y2P7 627 aaPredicted RBP11.06□□□□□ -0.64
LIMS3-206ENST00000631420 A0A1W2PRE2 83 aa11.05□□□□□ -0.64
LIMS3-206ENST00000631420 PGPA6NDG6 321 aa11.05□□□□□ -0.64
LIMS3-206ENST00000631420 ATP5G3P48201 142 aa11.05□□□□□ -0.64
LIMS3-206ENST00000631420 MEOX2P50222 304 aa11.05□□□□□ -0.64
LIMS3-206ENST00000631420 PMS2P11Q13670 270 aa11.05□□□□□ -0.64
LIMS3-206ENST00000631420 PDE6HQ13956 83 aa11.05□□□□□ -0.64
LIMS3-206ENST00000631420 ICAM4Q14773 271 aa11.05□□□□□ -0.64
LIMS3-206ENST00000631420 CST9LP1Q5W188 147 aa11.05□□□□□ -0.64
LIMS3-206ENST00000631420 OR2K2Q8NGT1 345 aa11.05□□□□□ -0.64
LIMS3-206ENST00000631420 SPAG8Q99932 426 aaPredicted RBP11.05□□□□□ -0.64
LIMS3-206ENST00000631420 RBFOX3A6NFN3 312 aa11.04□□□□□ -0.64
LIMS3-206ENST00000631420 ZNF705FA8MVS1 300 aaPredicted RBP11.04□□□□□ -0.64
LIMS3-206ENST00000631420 GGTLC3B5MD39 225 aa11.04□□□□□ -0.64
LIMS3-206ENST00000631420 M0R3E3 92 aa11.04□□□□□ -0.64
LIMS3-206ENST00000631420 ZNF253O75346 499 aa11.04□□□□□ -0.64
LIMS3-206ENST00000631420 PPT1P50897 306 aa11.04□□□□□ -0.64
LIMS3-206ENST00000631420 PSG9Q00887 426 aa11.04□□□□□ -0.64
LIMS3-206ENST00000631420 LCN12Q6JVE5 192 aa11.04□□□□□ -0.64
LIMS3-206ENST00000631420 LINC00052Q96N35 136 aa11.04□□□□□ -0.64
LIMS3-206ENST00000631420 SLC50A1Q9BRV3 221 aa11.04□□□□□ -0.64
LIMS3-206ENST00000631420 LOC102723971A0A1B0GUV8 181 aa11.03□□□□□ -0.64
LIMS3-206ENST00000631420 ZNF688P0C7X2 276 aa11.03□□□□□ -0.64
LIMS3-206ENST00000631420 BCL2P10415 239 aa11.03□□□□□ -0.64
LIMS3-206ENST00000631420 DEFB1P60022 68 aa11.03□□□□□ -0.64
LIMS3-206ENST00000631420 SRSF3P84103 164 aaKnown RBP11.03□□□□□ -0.64
LIMS3-206ENST00000631420 TOR2AQ5JU69 321 aa11.03□□□□□ -0.64
LIMS3-206ENST00000631420 LYPD1Q8N2G4 141 aa11.03□□□□□ -0.64
LIMS3-206ENST00000631420 FAM210AQ96ND0 272 aa11.03□□□□□ -0.64
LIMS3-206ENST00000631420 MANBALQ9NQG1 85 aa11.03□□□□□ -0.64
LIMS3-206ENST00000631420 OTORQ9NRC9 128 aa11.03□□□□□ -0.64
LIMS3-206ENST00000631420 TRAV2A0A0B4J234 112 aa11.03□□□□□ -0.64
LIMS3-206ENST00000631420 ISLRO14498 428 aa11.03□□□□□ -0.64
LIMS3-206ENST00000631420 WIPF1O43516 503 aa11.03□□□□□ -0.64
LIMS3-206ENST00000631420 IFNA1P01562 189 aa11.03□□□□□ -0.64
LIMS3-206ENST00000631420 ID1P41134 155 aa11.03□□□□□ -0.64
LIMS3-206ENST00000631420 BEAN1Q3B7T3 259 aa11.03□□□□□ -0.64
LIMS3-206ENST00000631420 CCDC28AQ8IWP9 274 aa11.03□□□□□ -0.64
LIMS3-206ENST00000631420 RXFP4Q8TDU9 374 aa11.03□□□□□ -0.64
LIMS3-206ENST00000631420 AAMDCQ9H7C9 122 aa11.03□□□□□ -0.64
LIMS3-206ENST00000631420 PKD1L1Q8TDX9 2849 aa11.02□□□□□ -0.64
LIMS3-206ENST00000631420 OR4C46A6NHA9 309 aa11.02□□□□□ -0.65
LIMS3-206ENST00000631420 C11orf94C9JXX5 98 aa11.02□□□□□ -0.65
LIMS3-206ENST00000631420 PRAC2D3DTV9 90 aa11.02□□□□□ -0.65
LIMS3-206ENST00000631420 G3V4G9 280 aa11.02□□□□□ -0.65
LIMS3-206ENST00000631420 CD7P09564 240 aa11.02□□□□□ -0.65
LIMS3-206ENST00000631420 CD81P60033 236 aa11.02□□□□□ -0.65
LIMS3-206ENST00000631420 GNG5P63218 68 aa11.02□□□□□ -0.65
LIMS3-206ENST00000631420 PSG3Q16557 428 aa11.02□□□□□ -0.65
LIMS3-206ENST00000631420 PSMG4Q5JS54 123 aa11.02□□□□□ -0.65
LIMS3-206ENST00000631420 ZNF506Q5JVG8 444 aa11.02□□□□□ -0.65
LIMS3-206ENST00000631420 EIF5A2Q9GZV4 153 aaKnown RBP11.02□□□□□ -0.65
LIMS3-206ENST00000631420 VAX2Q9UIW0 290 aa11.02□□□□□ -0.65
LIMS3-206ENST00000631420 SLC25A5P05141 298 aaKnown RBP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms