RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 SP5Q6BEB4 398 aaPredicted RBP7.11□□□□□ -1.27
PDLIM5-222ENST00000615540 MIEN1Q9BRT3 115 aa7.11□□□□□ -1.27
PDLIM5-222ENST00000615540 UBE2E1P51965 193 aa7.1□□□□□ -1.27
PDLIM5-222ENST00000615540 BRWD1-AS2P59051 145 aa7.1□□□□□ -1.27
PDLIM5-222ENST00000615540 ZNF256Q9Y2P7 627 aaPredicted RBP7.1□□□□□ -1.27
PDLIM5-222ENST00000615540 TRBV7-1A0A0A6YYK4 115 aa7.1□□□□□ -1.27
PDLIM5-222ENST00000615540 ZNF295-AS1Q8N0V1 137 aa7.1□□□□□ -1.27
PDLIM5-222ENST00000615540 hDV102S1A0JD36 115 aa7.1□□□□□ -1.27
PDLIM5-222ENST00000615540 FBLL1A6NHQ2 334 aaKnown RBP7.1□□□□□ -1.27
PDLIM5-222ENST00000615540 HLA-DMBP28068 263 aa7.1□□□□□ -1.27
PDLIM5-222ENST00000615540 HIST1H4GQ99525 98 aa7.1□□□□□ -1.27
PDLIM5-222ENST00000615540 IGLC7A0M8Q6 106 aa7.1□□□□□ -1.27
PDLIM5-222ENST00000615540 EP300Q09472 2414 aaPredicted RBP7.1□□□□□ -1.27
PDLIM5-222ENST00000615540 ARMS2P0C7Q2 107 aa7.09□□□□□ -1.27
PDLIM5-222ENST00000615540 RRN3P1Q2M238 152 aa7.09□□□□□ -1.27
PDLIM5-222ENST00000615540 LINC01587Q99440 93 aa7.09□□□□□ -1.27
PDLIM5-222ENST00000615540 FCN3O75636 299 aa7.09□□□□□ -1.27
PDLIM5-222ENST00000615540 EMP1P54849 157 aa7.09□□□□□ -1.27
PDLIM5-222ENST00000615540 PRR20EP86478 221 aa7.09□□□□□ -1.27
PDLIM5-222ENST00000615540 PRR20CP86479 221 aa7.09□□□□□ -1.27
PDLIM5-222ENST00000615540 PRR20DP86480 221 aa7.09□□□□□ -1.27
PDLIM5-222ENST00000615540 PRR20BP86481 221 aa7.09□□□□□ -1.27
PDLIM5-222ENST00000615540 PRR20AP86496 221 aa7.09□□□□□ -1.27
PDLIM5-222ENST00000615540 SCGB3A1Q96QR1 104 aa7.09□□□□□ -1.27
PDLIM5-222ENST00000615540 PRSS22Q9GZN4 317 aa7.09□□□□□ -1.27
PDLIM5-222ENST00000615540 LY96Q9Y6Y9 160 aa7.09□□□□□ -1.27
PDLIM5-222ENST00000615540 PSMB11A5LHX3 300 aa7.09□□□□□ -1.27
PDLIM5-222ENST00000615540 H3BRN7 92 aa7.09□□□□□ -1.27
PDLIM5-222ENST00000615540 UBE2L6O14933 153 aa7.09□□□□□ -1.27
PDLIM5-222ENST00000615540 SLAQ13239 276 aa7.09□□□□□ -1.27
PDLIM5-222ENST00000615540 ATP5L2Q7Z4Y8 100 aa7.09□□□□□ -1.27
PDLIM5-222ENST00000615540 AMN1Q8IY45 258 aa7.09□□□□□ -1.27
PDLIM5-222ENST00000615540 THAP8Q8NA92 274 aa7.09□□□□□ -1.27
PDLIM5-222ENST00000615540 ADAMTS20P59510 1910 aa7.09□□□□□ -1.27
PDLIM5-222ENST00000615540 BEX4Q9NWD9 120 aaPredicted RBP7.09□□□□□ -1.27
PDLIM5-222ENST00000615540 DIDO1Q9BTC0 2240 aaKnown RBP7.09□□□□□ -1.27
PDLIM5-222ENST00000615540 TRAV12-3A0A0B4J271 114 aa7.09□□□□□ -1.27
PDLIM5-222ENST00000615540 TSPOP30536 169 aa7.09□□□□□ -1.27
PDLIM5-222ENST00000615540 CACNG7P62955 275 aa7.09□□□□□ -1.27
PDLIM5-222ENST00000615540 IGHV1-69DA0A0B4J2H0 117 aa7.08□□□□□ -1.28
PDLIM5-222ENST00000615540 B4DSR2 109 aa7.08□□□□□ -1.28
PDLIM5-222ENST00000615540 IGHV1-69P01742 117 aa7.08□□□□□ -1.28
PDLIM5-222ENST00000615540 Q6AWC8 147 aa7.08□□□□□ -1.28
PDLIM5-222ENST00000615540 ZNF562Q6V9R5 426 aa7.08□□□□□ -1.28
PDLIM5-222ENST00000615540 ZNF664Q8N3J9 261 aa7.08□□□□□ -1.28
PDLIM5-222ENST00000615540 TRBV19A0A075B6N1 114 aa7.08□□□□□ -1.28
PDLIM5-222ENST00000615540 IFI27P40305 119 aaPredicted RBP7.08□□□□□ -1.28
PDLIM5-222ENST00000615540 C21orf62-AS1Q17RA5 79 aa7.08□□□□□ -1.28
PDLIM5-222ENST00000615540 TMEM75Q8N9X5 138 aa7.08□□□□□ -1.28
PDLIM5-222ENST00000615540 ZC2HC1AQ96GY0 325 aa7.08□□□□□ -1.28
PDLIM5-222ENST00000615540 A0A1B0GW15 77 aa7.08□□□□□ -1.28
PDLIM5-222ENST00000615540 PF4P02776 101 aa7.08□□□□□ -1.28
PDLIM5-222ENST00000615540 LINC01356Q8N9X3 169 aa7.08□□□□□ -1.28
PDLIM5-222ENST00000615540 FAM110DQ8TAY7 271 aaPredicted RBP7.08□□□□□ -1.28
PDLIM5-222ENST00000615540 KAAG1Q9UBP8 84 aa7.08□□□□□ -1.28
PDLIM5-222ENST00000615540 SMIM27A0A1W2PRY6 76 aa7.08□□□□□ -1.28
PDLIM5-222ENST00000615540 OOSP1A8MZH6 123 aa7.08□□□□□ -1.28
PDLIM5-222ENST00000615540 IGHV2-5P01817 119 aa7.08□□□□□ -1.28
PDLIM5-222ENST00000615540 MSMBP08118 114 aa7.08□□□□□ -1.28
PDLIM5-222ENST00000615540 ZFP36P26651 326 aaKnown RBP7.08□□□□□ -1.28
PDLIM5-222ENST00000615540 RPL24P83731 157 aaKnown RBP7.08□□□□□ -1.28
PDLIM5-222ENST00000615540 LSM4Q9Y4Z0 139 aaKnown RBP7.08□□□□□ -1.28
PDLIM5-222ENST00000615540 OVOL3O00110 214 aa7.08□□□□□ -1.28
PDLIM5-222ENST00000615540 JKAMPQ9P055 326 aa7.08□□□□□ -1.28
PDLIM5-222ENST00000615540 GPR179Q6PRD1 2367 aa7.08□□□□□ -1.28
PDLIM5-222ENST00000615540 EML5Q05BV3 1969 aa7.08□□□□□ -1.28
PDLIM5-222ENST00000615540 TRAV26-2A0A0B4J265 109 aa7.07□□□□□ -1.28
PDLIM5-222ENST00000615540 FAM223BA6NKX1 122 aa7.07□□□□□ -1.28
PDLIM5-222ENST00000615540 C3orf79P0CE67 100 aa7.07□□□□□ -1.28
PDLIM5-222ENST00000615540 FAM223AQ8IWN6 122 aa7.07□□□□□ -1.28
PDLIM5-222ENST00000615540 POLR3KQ9Y2Y1 108 aaPredicted RBP7.07□□□□□ -1.28
PDLIM5-222ENST00000615540 ZNF688P0C7X2 276 aa7.07□□□□□ -1.28
PDLIM5-222ENST00000615540 IGLC1P0CG04 106 aa7.07□□□□□ -1.28
PDLIM5-222ENST00000615540 DAZAP2Q15038 168 aaPredicted RBP7.07□□□□□ -1.28
PDLIM5-222ENST00000615540 RCHY1Q96PM5 261 aa7.07□□□□□ -1.28
PDLIM5-222ENST00000615540 ZFHX2Q9C0A1 2572 aaPredicted RBP7.07□□□□□ -1.28
PDLIM5-222ENST00000615540 NDUFS6O75380 124 aaKnown RBP7.07□□□□□ -1.28
PDLIM5-222ENST00000615540 PAX1P15863 534 aa7.07□□□□□ -1.28
PDLIM5-222ENST00000615540 CHCHD1Q96BP2 118 aaKnown RBP7.07□□□□□ -1.28
PDLIM5-222ENST00000615540 VGLL1Q99990 258 aa7.07□□□□□ -1.28
PDLIM5-222ENST00000615540 TRAV21A0A0B4J279 112 aa7.07□□□□□ -1.28
PDLIM5-222ENST00000615540 MRPL36Q9P0J6 103 aaKnown RBP7.07□□□□□ -1.28
PDLIM5-222ENST00000615540 DCHS1Q96JQ0 3298 aa7.07□□□□□ -1.28
PDLIM5-222ENST00000615540 LGALS3P17931 250 aaKnown RBP7.07□□□□□ -1.28
PDLIM5-222ENST00000615540 Q96MF0 132 aa7.07□□□□□ -1.28
PDLIM5-222ENST00000615540 IGKV3D-20A0A0C4DH25 116 aa7.06□□□□□ -1.28
PDLIM5-222ENST00000615540 TMEM95Q3KNT9 176 aa7.06□□□□□ -1.28
PDLIM5-222ENST00000615540 KIR2DL4Q99706 377 aa7.06□□□□□ -1.28
PDLIM5-222ENST00000615540 TMEM249Q2WGJ8 235 aa7.06□□□□□ -1.28
PDLIM5-222ENST00000615540 TMEM170BQ5T4T1 132 aa7.06□□□□□ -1.28
PDLIM5-222ENST00000615540 RHPN1-AS1Q9BWJ2 59 aa7.06□□□□□ -1.28
PDLIM5-222ENST00000615540 ARHGAP21Q5T5U3 1957 aa7.06□□□□□ -1.28
PDLIM5-222ENST00000615540 IGHV4-38-2P0DP08 117 aa7.06□□□□□ -1.28
PDLIM5-222ENST00000615540 GTF2H5Q6ZYL4 71 aa7.06□□□□□ -1.28
PDLIM5-222ENST00000615540 NDUFAF3Q9BU61 184 aa7.06□□□□□ -1.28
PDLIM5-222ENST00000615540 EXPH5Q8NEV8 1989 aa7.06□□□□□ -1.28
PDLIM5-222ENST00000615540 IGHV3-64A0A075B6Q5 118 aa7.06□□□□□ -1.28
PDLIM5-222ENST00000615540 HBDP02042 147 aa7.06□□□□□ -1.28
PDLIM5-222ENST00000615540 PATE2Q6UY27 113 aa7.06□□□□□ -1.28
PDLIM5-222ENST00000615540 Q6ZWC4 215 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms