RNA–Protein interactions for RNA: ENST00000572083.5

CCDC40-206, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 816 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-206ENST00000572083 H3BNG1 76 aa13.61□□□□□ -0.23
CCDC40-206ENST00000572083 RGS5O15539 181 aa13.61□□□□□ -0.23
CCDC40-206ENST00000572083 SMR3BP02814 79 aaPredicted RBP13.61□□□□□ -0.23
CCDC40-206ENST00000572083 DNAH10OSP0CZ25 163 aa13.61□□□□□ -0.23
CCDC40-206ENST00000572083 ANXA3P12429 323 aa13.61□□□□□ -0.23
CCDC40-206ENST00000572083 KRTAP10-1P60331 282 aa13.61□□□□□ -0.23
CCDC40-206ENST00000572083 RAP2BP61225 183 aa13.61□□□□□ -0.23
CCDC40-206ENST00000572083 SRPXP78539 464 aa13.61□□□□□ -0.23
CCDC40-206ENST00000572083 CDPF1Q6NVV7 123 aa13.61□□□□□ -0.23
CCDC40-206ENST00000572083 RPUSD4Q96CM3 377 aaKnown RBP13.61□□□□□ -0.23
CCDC40-206ENST00000572083 MDFICQ9P1T7 246 aa13.61□□□□□ -0.23
CCDC40-206ENST00000572083 A0A087X0K7 114 aa13.6□□□□□ -0.23
CCDC40-206ENST00000572083 A0A096LPF7 62 aa13.6□□□□□ -0.23
CCDC40-206ENST00000572083 SNURFLB1AK76 121 aa13.6□□□□□ -0.23
CCDC40-206ENST00000572083 GFI1BQ5VTD9 330 aa13.6□□□□□ -0.23
CCDC40-206ENST00000572083 ACOT7LQ6ZUV0 252 aa13.6□□□□□ -0.23
CCDC40-206ENST00000572083 CCDC28AQ8IWP9 274 aa13.6□□□□□ -0.23
CCDC40-206ENST00000572083 C18orf15Q96N68 181 aa13.6□□□□□ -0.23
CCDC40-206ENST00000572083 TNFRSF18Q9Y5U5 241 aa13.6□□□□□ -0.23
CCDC40-206ENST00000572083 SMCO3A2RU48 225 aa13.59□□□□□ -0.23
CCDC40-206ENST00000572083 H3BP45 60 aa13.59□□□□□ -0.23
CCDC40-206ENST00000572083 WRBO00258 174 aa13.59□□□□□ -0.23
CCDC40-206ENST00000572083 SIVA1O15304 175 aa13.59□□□□□ -0.23
CCDC40-206ENST00000572083 CTF1Q16619 201 aa13.59□□□□□ -0.23
CCDC40-206ENST00000572083 CYP2G1PQ6ZSU1 146 aa13.59□□□□□ -0.23
CCDC40-206ENST00000572083 SCGB3A2Q96PL1 93 aa13.59□□□□□ -0.23
CCDC40-206ENST00000572083 MCUBQ9NWR8 336 aa13.59□□□□□ -0.23
CCDC40-206ENST00000572083 SCP2D1Q9UJQ7 156 aa13.59□□□□□ -0.23
CCDC40-206ENST00000572083 IL5P05113 134 aa13.58□□□□□ -0.24
CCDC40-206ENST00000572083 OR5G3P0C626 314 aa13.58□□□□□ -0.24
CCDC40-206ENST00000572083 RPP30P78346 268 aaKnown RBP13.58□□□□□ -0.24
CCDC40-206ENST00000572083 IL18Q14116 193 aa13.58□□□□□ -0.24
CCDC40-206ENST00000572083 SPANXN5Q5MJ07 72 aa13.58□□□□□ -0.24
CCDC40-206ENST00000572083 Q6ZTI0 123 aa13.58□□□□□ -0.24
CCDC40-206ENST00000572083 VSIG2Q96IQ7 327 aa13.58□□□□□ -0.24
CCDC40-206ENST00000572083 CIB3Q96Q77 187 aaPredicted RBP13.58□□□□□ -0.24
CCDC40-206ENST00000572083 C20orf144Q9BQM9 153 aa13.58□□□□□ -0.24
CCDC40-206ENST00000572083 ANKRD20A5PA0PJZ0 165 aa13.57□□□□□ -0.24
CCDC40-206ENST00000572083 J3KRW8 73 aa13.57□□□□□ -0.24
CCDC40-206ENST00000572083 CTDSP2O14595 271 aa13.57□□□□□ -0.24
CCDC40-206ENST00000572083 SYNGR2O43760 224 aa13.57□□□□□ -0.24
CCDC40-206ENST00000572083 HYPMO75409 117 aa13.57□□□□□ -0.24
CCDC40-206ENST00000572083 MED6O75586 246 aa13.57□□□□□ -0.24
CCDC40-206ENST00000572083 IFNA5P01569 189 aa13.57□□□□□ -0.24
CCDC40-206ENST00000572083 SNRPCP09234 159 aaKnown RBP13.57□□□□□ -0.24
CCDC40-206ENST00000572083 LINC00869P0C866 280 aa13.57□□□□□ -0.24
CCDC40-206ENST00000572083 HAMPP81172 84 aa13.57□□□□□ -0.24
CCDC40-206ENST00000572083 CCDC190Q86UF4 302 aa13.57□□□□□ -0.24
CCDC40-206ENST00000572083 DUXBA0A1W2PPF3 345 aa13.56□□□□□ -0.24
CCDC40-206ENST00000572083 NXPH4O95158 308 aa13.56□□□□□ -0.24
CCDC40-206ENST00000572083 ICAM4Q14773 271 aa13.56□□□□□ -0.24
CCDC40-206ENST00000572083 PMS2P5A8MQ11 134 aa13.55□□□□□ -0.24
CCDC40-206ENST00000572083 CTDSPLO15194 276 aa13.55□□□□□ -0.24
CCDC40-206ENST00000572083 A0A087WTM6 91 aa13.54□□□□□ -0.24
CCDC40-206ENST00000572083 PRAC2D3DTV9 90 aa13.54□□□□□ -0.24
CCDC40-206ENST00000572083 MRPS12O15235 138 aaKnown RBP13.54□□□□□ -0.24
CCDC40-206ENST00000572083 SLC25A6P12236 298 aa13.54□□□□□ -0.24
CCDC40-206ENST00000572083 TMED4Q7Z7H5 227 aa13.54□□□□□ -0.24
CCDC40-206ENST00000572083 ZNF331Q9NQX6 463 aaPredicted RBP13.54□□□□□ -0.24
CCDC40-206ENST00000572083 STRAPQ9Y3F4 350 aaKnown RBP13.54□□□□□ -0.24
CCDC40-206ENST00000572083 TRGV2A0A075B6R0 118 aa13.53□□□□□ -0.24
CCDC40-206ENST00000572083 TRAV12-3A0A0B4J271 114 aa13.53□□□□□ -0.24
CCDC40-206ENST00000572083 PIGBOS1A0A0B4J2F0 54 aa13.53□□□□□ -0.24
CCDC40-206ENST00000572083 ANXA7P20073 488 aaKnown RBP13.53□□□□□ -0.24
CCDC40-206ENST00000572083 PLP1P60201 277 aa13.53□□□□□ -0.24
CCDC40-206ENST00000572083 LCN15Q6UWW0 184 aa13.53□□□□□ -0.24
CCDC40-206ENST00000572083 DIRAS2Q96HU8 199 aa13.53□□□□□ -0.24
CCDC40-206ENST00000572083 ARL6Q9H0F7 186 aa13.53□□□□□ -0.24
CCDC40-206ENST00000572083 H3BTX0 84 aa13.52□□□□□ -0.25
CCDC40-206ENST00000572083 VAMP1P23763 118 aa13.52□□□□□ -0.25
CCDC40-206ENST00000572083 DAZ2Q13117 558 aaKnown RBP13.52□□□□□ -0.25
CCDC40-206ENST00000572083 PATE2Q6UY27 113 aa13.52□□□□□ -0.25
CCDC40-206ENST00000572083 LINC00854A0A1B0GVQ3 168 aa13.51□□□□□ -0.25
CCDC40-206ENST00000572083 FAM229AH3BQW9 127 aa13.51□□□□□ -0.25
CCDC40-206ENST00000572083 J3QL48 77 aa13.51□□□□□ -0.25
CCDC40-206ENST00000572083 SLC17A3O00476 420 aa13.51□□□□□ -0.25
CCDC40-206ENST00000572083 CXCL2P19875 107 aa13.51□□□□□ -0.25
CCDC40-206ENST00000572083 TMEM128Q5BJH2 165 aa13.51□□□□□ -0.25
CCDC40-206ENST00000572083 Q6ZSN1 163 aa13.51□□□□□ -0.25
CCDC40-206ENST00000572083 LRTM2Q8N967 370 aa13.51□□□□□ -0.25
CCDC40-206ENST00000572083 SLC50A1Q9BRV3 221 aa13.51□□□□□ -0.25
CCDC40-206ENST00000572083 ARV1Q9H2C2 271 aa13.51□□□□□ -0.25
CCDC40-206ENST00000572083 RABL2BQ9UNT1 228 aa13.51□□□□□ -0.25
CCDC40-206ENST00000572083 HOXB5P09067 269 aa13.5□□□□□ -0.25
CCDC40-206ENST00000572083 RRAS2P62070 204 aaPredicted RBP13.5□□□□□ -0.25
CCDC40-206ENST00000572083 SELENOTP62341 195 aa13.5□□□□□ -0.25
CCDC40-206ENST00000572083 S100A7AQ86SG5 101 aa13.5□□□□□ -0.25
CCDC40-206ENST00000572083 NFE4Q86UQ8 179 aa13.5□□□□□ -0.25
CCDC40-206ENST00000572083 GSN-AS1Q9NRJ2 163 aa13.5□□□□□ -0.25
CCDC40-206ENST00000572083 ICOSQ9Y6W8 199 aa13.5□□□□□ -0.25
CCDC40-206ENST00000572083 TRGV1A0A0A0MS02 117 aa13.49□□□□□ -0.25
CCDC40-206ENST00000572083 CCNKO75909 580 aa13.49□□□□□ -0.25
CCDC40-206ENST00000572083 GCSHP23434 173 aa13.49□□□□□ -0.25
CCDC40-206ENST00000572083 PYGO2Q9BRQ0 406 aa13.49□□□□□ -0.25
CCDC40-206ENST00000572083 FUT9Q9Y231 359 aa13.49□□□□□ -0.25
CCDC40-206ENST00000572083 DNAH8Q96JB1 4490 aa13.49□□□□□ -0.25
CCDC40-206ENST00000572083 CT45A10P0DMU9 189 aa13.48□□□□□ -0.25
CCDC40-206ENST00000572083 LEPP41159 167 aa13.48□□□□□ -0.25
CCDC40-206ENST00000572083 SLC38A11Q08AI6 406 aa13.48□□□□□ -0.25
CCDC40-206ENST00000572083 SPCS2Q15005 226 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms