RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 PRAC2D3DTV9 90 aa13.17□□□□□ -0.3
NUP88-203ENST00000572019 SYNGR2O43760 224 aa13.17□□□□□ -0.3
NUP88-203ENST00000572019 ANXA3P12429 323 aa13.17□□□□□ -0.3
NUP88-203ENST00000572019 CDKN1BP46527 198 aa13.17□□□□□ -0.3
NUP88-203ENST00000572019 PATE2Q6UY27 113 aa13.17□□□□□ -0.3
NUP88-203ENST00000572019 ZNF493Q6ZR52 646 aa13.17□□□□□ -0.3
NUP88-203ENST00000572019 RPUSD4Q96CM3 377 aaKnown RBP13.17□□□□□ -0.3
NUP88-203ENST00000572019 TMPRSS5Q9H3S3 457 aa13.17□□□□□ -0.3
NUP88-203ENST00000572019 PPP1R14DQ9NXH3 145 aa13.17□□□□□ -0.3
NUP88-203ENST00000572019 HIGD1AQ9Y241 93 aa13.17□□□□□ -0.3
NUP88-203ENST00000572019 A0A1W2PPQ1 181 aa13.16□□□□□ -0.3
NUP88-203ENST00000572019 LINC00869P0C866 280 aa13.16□□□□□ -0.3
NUP88-203ENST00000572019 RPL7P18124 248 aaKnown RBP13.16□□□□□ -0.3
NUP88-203ENST00000572019 GFI1BQ5VTD9 330 aa13.16□□□□□ -0.3
NUP88-203ENST00000572019 LYPD1Q8N2G4 141 aa13.16□□□□□ -0.3
NUP88-203ENST00000572019 ZNF503Q96F45 646 aa13.16□□□□□ -0.3
NUP88-203ENST00000572019 VSIG2Q96IQ7 327 aa13.16□□□□□ -0.3
NUP88-203ENST00000572019 SCGB3A2Q96PL1 93 aa13.16□□□□□ -0.3
NUP88-203ENST00000572019 DUXBA0A1W2PPF3 345 aa13.15□□□□□ -0.3
NUP88-203ENST00000572019 PMS2P5A8MQ11 134 aa13.15□□□□□ -0.3
NUP88-203ENST00000572019 H7BYZ3 331 aa13.15□□□□□ -0.3
NUP88-203ENST00000572019 HYPMO75409 117 aa13.15□□□□□ -0.3
NUP88-203ENST00000572019 IL5P05113 134 aa13.15□□□□□ -0.3
NUP88-203ENST00000572019 OR5G3P0C626 314 aa13.15□□□□□ -0.3
NUP88-203ENST00000572019 SLC25A6P12236 298 aa13.15□□□□□ -0.3
NUP88-203ENST00000572019 LRTM2Q8N967 370 aa13.15□□□□□ -0.3
NUP88-203ENST00000572019 ZBTB8BQ8NAP8 495 aaPredicted RBP13.15□□□□□ -0.3
NUP88-203ENST00000572019 OR10J6PQ8NGY7 276 aa13.15□□□□□ -0.3
NUP88-203ENST00000572019 A0A096LPF7 62 aa13.14□□□□□ -0.31
NUP88-203ENST00000572019 LINC00854A0A1B0GVQ3 168 aa13.14□□□□□ -0.31
NUP88-203ENST00000572019 SMCO3A2RU48 225 aa13.14□□□□□ -0.31
NUP88-203ENST00000572019 H3BTX0 84 aa13.14□□□□□ -0.31
NUP88-203ENST00000572019 J3KRW8 73 aa13.14□□□□□ -0.31
NUP88-203ENST00000572019 MED6O75586 246 aa13.14□□□□□ -0.31
NUP88-203ENST00000572019 HOXB5P09067 269 aa13.14□□□□□ -0.31
NUP88-203ENST00000572019 VAMP1P23763 118 aa13.14□□□□□ -0.31
NUP88-203ENST00000572019 PLP1P60201 277 aa13.14□□□□□ -0.31
NUP88-203ENST00000572019 RAP2BP61225 183 aa13.14□□□□□ -0.31
NUP88-203ENST00000572019 Q5VSD8 79 aa13.14□□□□□ -0.31
NUP88-203ENST00000572019 Q6ZTI0 123 aa13.14□□□□□ -0.31
NUP88-203ENST00000572019 CIB3Q96Q77 187 aaPredicted RBP13.14□□□□□ -0.31
NUP88-203ENST00000572019 RABL2BQ9UNT1 228 aa13.14□□□□□ -0.31
NUP88-203ENST00000572019 VPS13BQ7Z7G8 4022 aa13.13□□□□□ -0.31
NUP88-203ENST00000572019 SLC17A3O00476 420 aa13.13□□□□□ -0.31
NUP88-203ENST00000572019 KRTAP10-1P60331 282 aa13.13□□□□□ -0.31
NUP88-203ENST00000572019 TMEM128Q5BJH2 165 aa13.13□□□□□ -0.31
NUP88-203ENST00000572019 SOSTQ9BQB4 213 aa13.13□□□□□ -0.31
NUP88-203ENST00000572019 DNAH10OSP0CZ25 163 aa13.12□□□□□ -0.31
NUP88-203ENST00000572019 RRAS2P62070 204 aaPredicted RBP13.12□□□□□ -0.31
NUP88-203ENST00000572019 POLR2GP62487 172 aaKnown RBP eCLIP13.12□□□□□ -0.31
NUP88-203ENST00000572019 PPP1R1AQ13522 171 aa13.12□□□□□ -0.31
NUP88-203ENST00000572019 MORN5Q5VZ52 161 aa13.12□□□□□ -0.31
NUP88-203ENST00000572019 ARL6Q9H0F7 186 aa13.12□□□□□ -0.31
NUP88-203ENST00000572019 ZNF331Q9NQX6 463 aaPredicted RBP13.12□□□□□ -0.31
NUP88-203ENST00000572019 STRAPQ9Y3F4 350 aaKnown RBP13.12□□□□□ -0.31
NUP88-203ENST00000572019 RLN2P04090 185 aa13.11□□□□□ -0.31
NUP88-203ENST00000572019 RPP30P78346 268 aaKnown RBP13.11□□□□□ -0.31
NUP88-203ENST00000572019 SLC38A11Q08AI6 406 aa13.11□□□□□ -0.31
NUP88-203ENST00000572019 LRRC20Q8TCA0 184 aa13.11□□□□□ -0.31
NUP88-203ENST00000572019 DYNC2LI1Q8TCX1 351 aa13.11□□□□□ -0.31
NUP88-203ENST00000572019 H3BNG1 76 aa13.1□□□□□ -0.31
NUP88-203ENST00000572019 SFT2D2O95562 160 aa13.1□□□□□ -0.31
NUP88-203ENST00000572019 CCDC190Q86UF4 302 aa13.1□□□□□ -0.31
NUP88-203ENST00000572019 TRIM63Q969Q1 353 aa13.1□□□□□ -0.31
NUP88-203ENST00000572019 ARV1Q9H2C2 271 aa13.1□□□□□ -0.31
NUP88-203ENST00000572019 TRAV12-3A0A0B4J271 114 aa13.09□□□□□ -0.31
NUP88-203ENST00000572019 ADAP1O75689 374 aa13.09□□□□□ -0.31
NUP88-203ENST00000572019 CT45A10P0DMU9 189 aa13.09□□□□□ -0.31
NUP88-203ENST00000572019 TNFSF8P32971 234 aa13.09□□□□□ -0.31
NUP88-203ENST00000572019 HAMPP81172 84 aa13.09□□□□□ -0.31
NUP88-203ENST00000572019 C20orf144Q9BQM9 153 aa13.09□□□□□ -0.31
NUP88-203ENST00000572019 MDFICQ9P1T7 246 aa13.09□□□□□ -0.31
NUP88-203ENST00000572019 SMR3BP02814 79 aaPredicted RBP13.08□□□□□ -0.32
NUP88-203ENST00000572019 ANXA7P20073 488 aaKnown RBP13.08□□□□□ -0.32
NUP88-203ENST00000572019 S100A7P31151 101 aa13.08□□□□□ -0.32
NUP88-203ENST00000572019 ID3Q02535 119 aa13.08□□□□□ -0.32
NUP88-203ENST00000572019 PSENENQ9NZ42 101 aa13.08□□□□□ -0.32
NUP88-203ENST00000572019 CCDC59Q9P031 241 aaKnown RBP13.08□□□□□ -0.32
NUP88-203ENST00000572019 RSL24D1Q9UHA3 163 aaKnown RBP13.08□□□□□ -0.32
NUP88-203ENST00000572019 SNURFLB1AK76 121 aa13.07□□□□□ -0.32
NUP88-203ENST00000572019 H3BQ15 152 aa13.07□□□□□ -0.32
NUP88-203ENST00000572019 METTL15P1P0C7V9 234 aa13.07□□□□□ -0.32
NUP88-203ENST00000572019 CCDC28AQ8IWP9 274 aa13.07□□□□□ -0.32
NUP88-203ENST00000572019 C11orf72Q8NBR9 251 aa13.07□□□□□ -0.32
NUP88-203ENST00000572019 ZNF431Q8TF32 576 aaPredicted RBP13.07□□□□□ -0.32
NUP88-203ENST00000572019 SLIRPQ9GZT3 109 aaKnown RBP13.07□□□□□ -0.32
NUP88-203ENST00000572019 GSN-AS1Q9NRJ2 163 aa13.07□□□□□ -0.32
NUP88-203ENST00000572019 PGPEP1Q9NXJ5 209 aa13.07□□□□□ -0.32
NUP88-203ENST00000572019 RABL2AQ9UBK7 228 aaPredicted RBP13.07□□□□□ -0.32
NUP88-203ENST00000572019 SIVA1O15304 175 aa13.06□□□□□ -0.32
NUP88-203ENST00000572019 SSSCA1O60232 199 aa13.06□□□□□ -0.32
NUP88-203ENST00000572019 NXPH4O95158 308 aa13.06□□□□□ -0.32
NUP88-203ENST00000572019 ARL16Q0P5N6 197 aa13.06□□□□□ -0.32
NUP88-203ENST00000572019 DAZ2Q13117 558 aaKnown RBP13.06□□□□□ -0.32
NUP88-203ENST00000572019 LCN15Q6UWW0 184 aa13.06□□□□□ -0.32
NUP88-203ENST00000572019 LINC00305Q7Z4B0 112 aa13.06□□□□□ -0.32
NUP88-203ENST00000572019 SRRM2Q9UQ35 2752 aaKnown RBP13.06□□□□□ -0.32
NUP88-203ENST00000572019 FABP12A6NFH5 140 aa13.05□□□□□ -0.32
NUP88-203ENST00000572019 K7EPK0 472 aa13.05□□□□□ -0.32
NUP88-203ENST00000572019 CXCL2P19875 107 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms