RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 SSSCA1O60232 199 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 EPPINO95925 133 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 IGLV2-11P01706 119 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 IGKCP01834 107 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 GYPBP06028 91 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 LINC00271P0C7V0 271 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 GATA1P15976 413 aaPredicted RBP2.52□□□□□ -2.01
VPS35-208ENST00000568612 NPPCP23582 126 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 MAGEA5P43359 124 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 RPL34P49207 117 aaKnown RBP2.52□□□□□ -2.01
VPS35-208ENST00000568612 GFERP55789 205 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 UBE2D3P61077 147 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 HERV-K104P61576 105 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 HIST1H4AP62805 103 aaKnown RBP2.52□□□□□ -2.01
VPS35-208ENST00000568612 UBE2D2P62837 147 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 FKBP1BP68106 108 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 GTF3C1Q12789 2109 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 RSPO1Q2MKA7 263 aaPredicted RBP2.52□□□□□ -2.01
VPS35-208ENST00000568612 C12orf74Q32Q52 190 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 SP6Q3SY56 376 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 HES3Q5TGS1 186 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 FRG2Q64ET8 278 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.52□□□□□ -2.01
VPS35-208ENST00000568612 C22orf39Q6P5X5 142 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 Q6ZRU5 148 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 LINC00173Q6ZV60 143 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 C6orf201Q7Z4U5 140 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 ATP5L2Q7Z4Y8 100 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 MRPL55Q7Z7F7 128 aaKnown RBP2.52□□□□□ -2.01
VPS35-208ENST00000568612 LINC00311Q8N616 119 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 NFAM1Q8NET5 270 aaPredicted RBP2.52□□□□□ -2.01
VPS35-208ENST00000568612 TMEM158Q8WZ71 300 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 C11orf52Q96A22 123 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 C4orf45Q96LM5 186 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 NMNAT3Q96T66 252 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 DSCR8Q96T75 97 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 FOXC2Q99958 501 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 WFDC6Q9BQY6 131 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 TTTY10Q9BZA0 68 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 OSTCQ9NRP0 149 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 CACNG5Q9UF02 275 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 Q9UF83 564 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 EPDR1Q9UM22 224 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 HHLA3Q9XRX5 114 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 F11RQ9Y624 299 aaKnown RBP2.52□□□□□ -2.01
VPS35-208ENST00000568612 SERP1Q9Y6X1 66 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 TRPM6Q9BX84 2022 aa2.52□□□□□ -2.01
VPS35-208ENST00000568612 ARHGAP21Q5T5U3 1957 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 TRBV20OR9-2A0A075B6H5 130 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 IGKV6D-41A0A0C4DH26 115 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 A0A0U1RQV1 116 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 SMIM27A0A1W2PRY6 76 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 PGPA6NDG6 321 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 TMEM202A6NGA9 273 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 CPSF4LA6NMK7 179 aaKnown RBP2.51□□□□□ -2.01
VPS35-208ENST00000568612 PRR32B1ATL7 298 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 USP17L23D6RBM5 183 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 HMGN4O00479 90 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 SCRG1O75711 98 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 C1orf105O95561 183 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 TCL1BO95988 128 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 IL4P05112 153 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 FRMD6-AS1P0C7T7 363 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 SCGB1C2P0DMR2 95 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 PYYP10082 97 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 MGST1P10620 155 aaKnown RBP2.51□□□□□ -2.01
VPS35-208ENST00000568612 COX6A1P12074 109 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 HLA-DOBP13765 273 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 COL8A2P25067 703 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 MT3P25713 68 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 DUTP33316 252 aaKnown RBP2.51□□□□□ -2.01
VPS35-208ENST00000568612 CXCL5P42830 114 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 SSR2P43308 183 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 EMDP50402 254 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 ZNF136P52737 540 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 EFNA4P52798 201 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 NPC2P61916 151 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 QRFPP83859 136 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 ARFRP1Q13795 201 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 CST6Q15828 149 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 FAM201AQ5SY85 155 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 TMEM170BQ5T4T1 132 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 C1orf140Q5VVS0 124 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 HIST2H2BCQ6DN03 193 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 HIST2H2BDQ6DRA6 164 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 KCTD18Q6PI47 426 aaPredicted RBP2.51□□□□□ -2.01
VPS35-208ENST00000568612 DGAT2L6Q6ZPD8 337 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 C9orf139Q6ZV77 190 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 LYPD6Q86Y78 171 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 PRR15Q8IV56 129 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 ZNF525Q8N782 197 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 DCAF4L2Q8NA75 395 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 UBE2E3Q969T4 207 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 BORCS8Q96FH0 119 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 Q96M85 177 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 PRSS27Q9BQR3 290 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 UPK3BQ9BT76 320 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 EMC6Q9BV81 110 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 SLC25A22Q9H936 323 aa2.51□□□□□ -2.01
VPS35-208ENST00000568612 FAM60AQ9NP50 221 aa2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms