RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 CELSR2Q9HCU4 2923 aa-0.64□□□□□ -2.51
VPS13C-205ENST00000558088 RBBP6Q7Z6E9 1792 aaKnown RBP-0.64□□□□□ -2.51
VPS13C-205ENST00000558088 A0A087WSZ3 146 aa-0.64□□□□□ -2.51
VPS13C-205ENST00000558088 hADV38S2A0JD32 116 aa-0.64□□□□□ -2.51
VPS13C-205ENST00000558088 CHP2O43745 196 aa-0.64□□□□□ -2.51
VPS13C-205ENST00000558088 HIST1H1EP10412 219 aaKnown RBP-0.64□□□□□ -2.51
VPS13C-205ENST00000558088 PDE6GP18545 87 aa-0.64□□□□□ -2.51
VPS13C-205ENST00000558088 SNRPD3P62318 126 aaKnown RBP-0.64□□□□□ -2.51
VPS13C-205ENST00000558088 UBE2BP63146 152 aa-0.64□□□□□ -2.51
VPS13C-205ENST00000558088 H3F3AP84243 136 aa-0.64□□□□□ -2.51
VPS13C-205ENST00000558088 NEDD8Q15843 81 aa-0.64□□□□□ -2.51
VPS13C-205ENST00000558088 VMA21Q3ZAQ7 101 aa-0.64□□□□□ -2.51
VPS13C-205ENST00000558088 XAF1Q6GPH4 301 aa-0.64□□□□□ -2.51
VPS13C-205ENST00000558088 IFT20Q8IY31 132 aa-0.64□□□□□ -2.51
VPS13C-205ENST00000558088 PTH2Q96A98 100 aa-0.64□□□□□ -2.51
VPS13C-205ENST00000558088 BORCS7Q96B45 105 aa-0.64□□□□□ -2.51
VPS13C-205ENST00000558088 PARD6GQ9BYG4 376 aaPredicted RBP-0.64□□□□□ -2.51
VPS13C-205ENST00000558088 GLTPQ9NZD2 209 aa-0.64□□□□□ -2.51
VPS13C-205ENST00000558088 NAT8BQ9UHF3 227 aa-0.64□□□□□ -2.51
VPS13C-205ENST00000558088 MYH7BA7E2Y1 1941 aa-0.64□□□□□ -2.51
VPS13C-205ENST00000558088 POLQO75417 2590 aa-0.64□□□□□ -2.51
VPS13C-205ENST00000558088 C9orf84Q5VXU9 1444 aa-0.64□□□□□ -2.51
VPS13C-205ENST00000558088 HECW2Q9P2P5 1572 aa-0.65□□□□□ -2.51
VPS13C-205ENST00000558088 PLXND1Q9Y4D7 1925 aa-0.65□□□□□ -2.51
VPS13C-205ENST00000558088 DUXBA0A1W2PPF3 345 aa-0.65□□□□□ -2.51
VPS13C-205ENST00000558088 TAX1BP3O14907 124 aa-0.65□□□□□ -2.51
VPS13C-205ENST00000558088 HLA-EP13747 358 aa-0.65□□□□□ -2.51
VPS13C-205ENST00000558088 EVI2AP22794 236 aa-0.65□□□□□ -2.51
VPS13C-205ENST00000558088 PIGPP57054 158 aa-0.65□□□□□ -2.51
VPS13C-205ENST00000558088 OR2F1Q13607 317 aa-0.65□□□□□ -2.51
VPS13C-205ENST00000558088 RRN3P1Q2M238 152 aa-0.65□□□□□ -2.51
VPS13C-205ENST00000558088 SREK1IP1Q8N9Q2 155 aaPredicted RBP-0.65□□□□□ -2.51
VPS13C-205ENST00000558088 ARL5BQ96KC2 179 aa-0.65□□□□□ -2.51
VPS13C-205ENST00000558088 GUCA1BQ9UMX6 200 aa-0.65□□□□□ -2.51
VPS13C-205ENST00000558088 NOSIPQ9Y314 301 aaKnown RBP-0.65□□□□□ -2.51
VPS13C-205ENST00000558088 ARHGEF28Q8N1W1 1705 aaKnown RBP-0.65□□□□□ -2.51
VPS13C-205ENST00000558088 ERBINQ96RT1 1412 aa-0.65□□□□□ -2.51
VPS13C-205ENST00000558088 PLXNA4Q9HCM2 1894 aa-0.66□□□□□ -2.52
VPS13C-205ENST00000558088 hDV103S1A0JD37 113 aa-0.66□□□□□ -2.52
VPS13C-205ENST00000558088 PDE6DO43924 150 aa-0.66□□□□□ -2.52
VPS13C-205ENST00000558088 IGLV1-51P01701 117 aa-0.66□□□□□ -2.52
VPS13C-205ENST00000558088 ERP29P30040 261 aaKnown RBP-0.66□□□□□ -2.52
VPS13C-205ENST00000558088 ETV6P41212 452 aa-0.66□□□□□ -2.52
VPS13C-205ENST00000558088 DIAPH2-AS1Q14236 149 aa-0.66□□□□□ -2.52
VPS13C-205ENST00000558088 KRTAP19-7Q3SYF9 63 aa-0.66□□□□□ -2.52
VPS13C-205ENST00000558088 FOXI2Q6ZQN5 318 aa-0.66□□□□□ -2.52
VPS13C-205ENST00000558088 GOLT1AQ6ZVE7 132 aa-0.66□□□□□ -2.52
VPS13C-205ENST00000558088 C12orf45Q8N5I9 185 aaPredicted RBP-0.66□□□□□ -2.52
VPS13C-205ENST00000558088 GRPEL2Q8TAA5 225 aa-0.66□□□□□ -2.52
VPS13C-205ENST00000558088 ZHX1-C8orf76Q96EF9 292 aa-0.66□□□□□ -2.52
VPS13C-205ENST00000558088 ANK2Q01484 3957 aa-0.66□□□□□ -2.52
VPS13C-205ENST00000558088 LRP2P98164 4655 aa-0.67□□□□□ -2.52
VPS13C-205ENST00000558088 MYO5AQ9Y4I1 1855 aaKnown RBP-0.67□□□□□ -2.52
VPS13C-205ENST00000558088 CLDN24A6NM45 220 aa-0.67□□□□□ -2.52
VPS13C-205ENST00000558088 TMEM256-PLSCR3K7ERE1 68 aa-0.67□□□□□ -2.52
VPS13C-205ENST00000558088 DYNLT3P51808 116 aa-0.67□□□□□ -2.52
VPS13C-205ENST00000558088 CLDN22Q8N7P3 220 aa-0.67□□□□□ -2.52
VPS13C-205ENST00000558088 AP1S3Q96PC3 154 aa-0.67□□□□□ -2.52
VPS13C-205ENST00000558088 TRIM4Q9C037 500 aa-0.67□□□□□ -2.52
VPS13C-205ENST00000558088 RFX7Q2KHR2 1363 aa-0.68□□□□□ -2.52
VPS13C-205ENST00000558088 HSPG2P98160 4391 aa-0.68□□□□□ -2.52
VPS13C-205ENST00000558088 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP-0.68□□□□□ -2.52
VPS13C-205ENST00000558088 A0A0J9YY99 117 aa-0.68□□□□□ -2.52
VPS13C-205ENST00000558088 LYRM1O43325 122 aa-0.68□□□□□ -2.52
VPS13C-205ENST00000558088 IGHV3-33P01772 117 aa-0.68□□□□□ -2.52
VPS13C-205ENST00000558088 IFNA16P05015 189 aa-0.68□□□□□ -2.52
VPS13C-205ENST00000558088 TPM3P06753 285 aa-0.68□□□□□ -2.52
VPS13C-205ENST00000558088 TMBIM6P55061 237 aa-0.68□□□□□ -2.52
VPS13C-205ENST00000558088 KLRD1Q13241 179 aa-0.68□□□□□ -2.52
VPS13C-205ENST00000558088 SNCBQ16143 134 aa-0.68□□□□□ -2.52
VPS13C-205ENST00000558088 PPTC7Q8NI37 304 aa-0.68□□□□□ -2.52
VPS13C-205ENST00000558088 PRR15LQ9BU68 103 aa-0.68□□□□□ -2.52
VPS13C-205ENST00000558088 CACYBPQ9HB71 228 aaKnown RBP-0.68□□□□□ -2.52
VPS13C-205ENST00000558088 BIN3Q9NQY0 253 aa-0.68□□□□□ -2.52
VPS13C-205ENST00000558088 PRELID3BQ9Y3B1 194 aa-0.68□□□□□ -2.52
VPS13C-205ENST00000558088 DSPPQ9NZW4 1301 aa-0.68□□□□□ -2.52
VPS13C-205ENST00000558088 NCOA1Q15788 1441 aa-0.69□□□□□ -2.52
VPS13C-205ENST00000558088 A0A087WUJ7 227 aa-0.69□□□□□ -2.52
VPS13C-205ENST00000558088 LOC101927531A0A1B0GV80 90 aa-0.69□□□□□ -2.52
VPS13C-205ENST00000558088 RER1O15258 196 aa-0.69□□□□□ -2.52
VPS13C-205ENST00000558088 GGCTO75223 188 aaKnown RBP-0.69□□□□□ -2.52
VPS13C-205ENST00000558088 BANF1O75531 89 aa-0.69□□□□□ -2.52
VPS13C-205ENST00000558088 IFNA5P01569 189 aa-0.69□□□□□ -2.52
VPS13C-205ENST00000558088 NFYBP25208 207 aa-0.69□□□□□ -2.52
VPS13C-205ENST00000558088 TPM4P67936 248 aa-0.69□□□□□ -2.52
VPS13C-205ENST00000558088 IAH1Q2TAA2 248 aaPredicted RBP-0.69□□□□□ -2.52
VPS13C-205ENST00000558088 HACD4Q5VWC8 232 aa-0.69□□□□□ -2.52
VPS13C-205ENST00000558088 OTUD6BQ8N6M0 293 aa-0.69□□□□□ -2.52
VPS13C-205ENST00000558088 IMUPQ9GZP8 106 aa-0.69□□□□□ -2.52
VPS13C-205ENST00000558088 CST11Q9H112 138 aa-0.69□□□□□ -2.52
VPS13C-205ENST00000558088 NKIRAS1Q9NYS0 192 aa-0.69□□□□□ -2.52
VPS13C-205ENST00000558088 NEO1Q92859 1461 aa-0.69□□□□□ -2.52
VPS13C-205ENST00000558088 OBSL1O75147 1896 aa-0.69□□□□□ -2.52
VPS13C-205ENST00000558088 PTPN13Q12923 2485 aa-0.7□□□□□ -2.52
VPS13C-205ENST00000558088 M0R036 132 aa-0.7□□□□□ -2.52
VPS13C-205ENST00000558088 OMPP47874 163 aa-0.7□□□□□ -2.52
VPS13C-205ENST00000558088 MYL6P60660 151 aa-0.7□□□□□ -2.52
VPS13C-205ENST00000558088 FXYD3Q14802 87 aa-0.7□□□□□ -2.52
VPS13C-205ENST00000558088 C3orf62Q6ZUJ4 267 aa-0.7□□□□□ -2.52
VPS13C-205ENST00000558088 PTPRDP23468 1912 aa-0.7□□□□□ -2.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms