RNA–Protein interactions for RNA: ENST00000557060.1

SYNE2-225, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 3,203 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-225ENST00000557060 Q96MF0 132 aa4.62□□□□□ -1.67
SYNE2-225ENST00000557060 SHANK2-AS3Q9BTD1 123 aa4.62□□□□□ -1.67
SYNE2-225ENST00000557060 BEX4Q9NWD9 120 aaPredicted RBP4.62□□□□□ -1.67
SYNE2-225ENST00000557060 MOB4Q9Y3A3 225 aa4.62□□□□□ -1.67
SYNE2-225ENST00000557060 KLF2Q9Y5W3 355 aaPredicted RBP4.62□□□□□ -1.67
SYNE2-225ENST00000557060 V9GYV3 84 aa4.62□□□□□ -1.67
SYNE2-225ENST00000557060 VWC2LB2RUY7 222 aa4.61□□□□□ -1.67
SYNE2-225ENST00000557060 NDUFS8O00217 210 aa4.61□□□□□ -1.67
SYNE2-225ENST00000557060 UBE2CO00762 179 aa4.61□□□□□ -1.67
SYNE2-225ENST00000557060 HIST1H1EP10412 219 aaKnown RBP4.61□□□□□ -1.67
SYNE2-225ENST00000557060 SRP14P37108 136 aaKnown RBP4.61□□□□□ -1.67
SYNE2-225ENST00000557060 EBI3Q14213 229 aa4.61□□□□□ -1.67
SYNE2-225ENST00000557060 C5orf17Q8NAS9 161 aa4.61□□□□□ -1.67
SYNE2-225ENST00000557060 NUDT10Q8NFP7 164 aa4.61□□□□□ -1.67
SYNE2-225ENST00000557060 OR2D3Q8NGH3 330 aa4.61□□□□□ -1.67
SYNE2-225ENST00000557060 DAZAP1Q96EP5 407 aaKnown RBP4.61□□□□□ -1.67
SYNE2-225ENST00000557060 NUDT11Q96G61 164 aa4.61□□□□□ -1.67
SYNE2-225ENST00000557060 CCDC140Q96MF4 163 aa4.61□□□□□ -1.67
SYNE2-225ENST00000557060 GAR1Q9NY12 217 aaKnown RBP4.61□□□□□ -1.67
SYNE2-225ENST00000557060 IL36BQ9NZH7 164 aa4.61□□□□□ -1.67
SYNE2-225ENST00000557060 MRPL27Q9P0M9 148 aaKnown RBP4.61□□□□□ -1.67
SYNE2-225ENST00000557060 CDC42EP3Q9UKI2 254 aa4.61□□□□□ -1.67
SYNE2-225ENST00000557060 C9JCJ5 164 aa4.61□□□□□ -1.67
SYNE2-225ENST00000557060 ZNF705DP0CH99 300 aaPredicted RBP4.61□□□□□ -1.67
SYNE2-225ENST00000557060 ZNF705BP0CI00 300 aaPredicted RBP4.61□□□□□ -1.67
SYNE2-225ENST00000557060 MEOX2P50222 304 aa4.61□□□□□ -1.67
SYNE2-225ENST00000557060 PVRIGQ6DKI7 326 aa4.61□□□□□ -1.67
SYNE2-225ENST00000557060 TMEM256Q8N2U0 113 aa4.61□□□□□ -1.67
SYNE2-225ENST00000557060 IGF2BP2-AS1Q96M15 143 aa4.61□□□□□ -1.67
SYNE2-225ENST00000557060 TMEM68Q96MH6 324 aa4.61□□□□□ -1.67
SYNE2-225ENST00000557060 ATG101Q9BSB4 218 aa4.61□□□□□ -1.67
SYNE2-225ENST00000557060 RABAC1Q9UI14 185 aa4.61□□□□□ -1.67
SYNE2-225ENST00000557060 TIMM8BQ9Y5J9 83 aaPredicted RBP4.61□□□□□ -1.67
SYNE2-225ENST00000557060 FN1P02751 2386 aaKnown RBP4.61□□□□□ -1.67
SYNE2-225ENST00000557060 TRBV19A0A075B6N1 114 aa4.61□□□□□ -1.67
SYNE2-225ENST00000557060 HIGD1CA8MV81 97 aa4.61□□□□□ -1.67
SYNE2-225ENST00000557060 F2Z2F3 143 aa4.61□□□□□ -1.67
SYNE2-225ENST00000557060 GATCO43716 136 aaKnown RBP4.61□□□□□ -1.67
SYNE2-225ENST00000557060 PAX1P15863 534 aa4.61□□□□□ -1.67
SYNE2-225ENST00000557060 DEFB1P60022 68 aa4.61□□□□□ -1.67
SYNE2-225ENST00000557060 ATP5G2Q06055 141 aa4.61□□□□□ -1.67
SYNE2-225ENST00000557060 OR5R1Q8NH85 324 aa4.61□□□□□ -1.67
SYNE2-225ENST00000557060 PGLYRP4Q96LB8 373 aa4.61□□□□□ -1.67
SYNE2-225ENST00000557060 MRPL18Q9H0U6 180 aaKnown RBP4.61□□□□□ -1.67
SYNE2-225ENST00000557060 AAMDCQ9H7C9 122 aa4.61□□□□□ -1.67
SYNE2-225ENST00000557060 TRAV30A0A087WSZ9 112 aa4.6□□□□□ -1.67
SYNE2-225ENST00000557060 H3BRN7 92 aa4.6□□□□□ -1.67
SYNE2-225ENST00000557060 BMPR1BO00238 502 aa4.6□□□□□ -1.67
SYNE2-225ENST00000557060 UNQ9165/PRO28630Q6UXU0 137 aa4.6□□□□□ -1.67
SYNE2-225ENST00000557060 BTF3L4Q96K17 158 aa4.6□□□□□ -1.67
SYNE2-225ENST00000557060 GPR82Q96P67 336 aa4.6□□□□□ -1.67
SYNE2-225ENST00000557060 SRSF8Q9BRL6 282 aaKnown RBP4.6□□□□□ -1.67
SYNE2-225ENST00000557060 ARL2-SNX15V9GYD0 113 aa4.6□□□□□ -1.67
SYNE2-225ENST00000557060 NUPR1O60356 82 aa4.6□□□□□ -1.67
SYNE2-225ENST00000557060 P01737 135 aa4.6□□□□□ -1.67
SYNE2-225ENST00000557060 CD99P14209 185 aa4.6□□□□□ -1.67
SYNE2-225ENST00000557060 HOXA5P20719 270 aa4.6□□□□□ -1.67
SYNE2-225ENST00000557060 CDX1P47902 265 aaPredicted RBP4.6□□□□□ -1.67
SYNE2-225ENST00000557060 GBGT1Q8N5D6 347 aa4.6□□□□□ -1.67
SYNE2-225ENST00000557060 LINC01356Q8N9X3 169 aa4.6□□□□□ -1.67
SYNE2-225ENST00000557060 WFDC11Q8NEX6 87 aa4.6□□□□□ -1.67
SYNE2-225ENST00000557060 FAM110DQ8TAY7 271 aaPredicted RBP4.6□□□□□ -1.67
SYNE2-225ENST00000557060 EEF1AKMT3Q96AZ1 226 aa4.6□□□□□ -1.67
SYNE2-225ENST00000557060 ZNF414Q96IQ9 312 aa4.6□□□□□ -1.67
SYNE2-225ENST00000557060 PACRGQ96M98 296 aaPredicted RBP4.6□□□□□ -1.67
SYNE2-225ENST00000557060 C8orf49Q96NF6 230 aa4.6□□□□□ -1.67
SYNE2-225ENST00000557060 NEU1Q99519 415 aa4.6□□□□□ -1.67
SYNE2-225ENST00000557060 GOSR1O95249 250 aa4.59□□□□□ -1.67
SYNE2-225ENST00000557060 GCGP01275 180 aa4.59□□□□□ -1.67
SYNE2-225ENST00000557060 IGLC2P0DOY2 106 aa4.59□□□□□ -1.67
SYNE2-225ENST00000557060 ARL3P36405 182 aa4.59□□□□□ -1.67
SYNE2-225ENST00000557060 FOXA3P55318 350 aaPredicted RBP4.59□□□□□ -1.67
SYNE2-225ENST00000557060 PLP1P60201 277 aa4.59□□□□□ -1.67
SYNE2-225ENST00000557060 YPEL3P61236 119 aaPredicted RBP4.59□□□□□ -1.67
SYNE2-225ENST00000557060 FOXL1Q12952 345 aa4.59□□□□□ -1.67
SYNE2-225ENST00000557060 ERCC8Q13216 396 aa4.59□□□□□ -1.67
SYNE2-225ENST00000557060 TMEM183BQ1AE95 376 aa4.59□□□□□ -1.67
SYNE2-225ENST00000557060 KHDC1LQ5JSQ8 128 aa4.59□□□□□ -1.67
SYNE2-225ENST00000557060 ACTL10Q5JWF8 245 aa4.59□□□□□ -1.67
SYNE2-225ENST00000557060 SIGLEC15Q6ZMC9 328 aa4.59□□□□□ -1.67
SYNE2-225ENST00000557060 BAGE3Q86Y29 109 aa4.59□□□□□ -1.67
SYNE2-225ENST00000557060 HIST3H2BBQ8N257 126 aa4.59□□□□□ -1.67
SYNE2-225ENST00000557060 C11orf44Q8N8P7 122 aa4.59□□□□□ -1.67
SYNE2-225ENST00000557060 ZNF502Q8TBZ5 544 aa4.59□□□□□ -1.67
SYNE2-225ENST00000557060 WI2-2373I1.2A0A1W2PRP0 233 aa4.59□□□□□ -1.67
SYNE2-225ENST00000557060 SCGB2A1O75556 95 aa4.59□□□□□ -1.67
SYNE2-225ENST00000557060 EDN2P20800 178 aa4.59□□□□□ -1.67
SYNE2-225ENST00000557060 MYCNOSP40205 109 aa4.59□□□□□ -1.67
SYNE2-225ENST00000557060 CSN1S1P47710 185 aa4.59□□□□□ -1.67
SYNE2-225ENST00000557060 TFPI2P48307 235 aa4.59□□□□□ -1.67
SYNE2-225ENST00000557060 DEFB113Q30KQ7 82 aa4.59□□□□□ -1.67
SYNE2-225ENST00000557060 PYY3Q5JQD4 70 aa4.59□□□□□ -1.67
SYNE2-225ENST00000557060 WFDC3Q8IUB2 231 aa4.59□□□□□ -1.67
SYNE2-225ENST00000557060 TMEM75Q8N9X5 138 aa4.59□□□□□ -1.67
SYNE2-225ENST00000557060 WFDC12Q8WWY7 111 aa4.59□□□□□ -1.67
SYNE2-225ENST00000557060 HIST1H2BLQ99880 126 aa4.59□□□□□ -1.67
SYNE2-225ENST00000557060 VGLL1Q99990 258 aa4.59□□□□□ -1.67
SYNE2-225ENST00000557060 PYGO2Q9BRQ0 406 aa4.59□□□□□ -1.67
SYNE2-225ENST00000557060 ZNF331Q9NQX6 463 aaPredicted RBP4.59□□□□□ -1.67
SYNE2-225ENST00000557060 PITPNC1Q9UKF7 332 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms