RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 SHANK2-AS3Q9BTD1 123 aa11.65□□□□□ -0.54
VPS29-204ENST00000548259 PRR13Q9NZ81 148 aa11.65□□□□□ -0.54
VPS29-204ENST00000548259 DUXBA0A1W2PPF3 345 aa11.64□□□□□ -0.55
VPS29-204ENST00000548259 H3BRN7 92 aa11.64□□□□□ -0.55
VPS29-204ENST00000548259 HYPMO75409 117 aa11.64□□□□□ -0.55
VPS29-204ENST00000548259 IL5P05113 134 aa11.64□□□□□ -0.55
VPS29-204ENST00000548259 HOXA5P20719 270 aa11.64□□□□□ -0.55
VPS29-204ENST00000548259 GATA2P23769 480 aaPredicted RBP11.64□□□□□ -0.55
VPS29-204ENST00000548259 ICAM4Q14773 271 aa11.64□□□□□ -0.55
VPS29-204ENST00000548259 SRRM2Q9UQ35 2752 aaKnown RBP11.64□□□□□ -0.55
VPS29-204ENST00000548259 TRAV9-2A0A087WT02 112 aa11.63□□□□□ -0.55
VPS29-204ENST00000548259 J3QL48 77 aa11.63□□□□□ -0.55
VPS29-204ENST00000548259 RGS5O15539 181 aa11.63□□□□□ -0.55
VPS29-204ENST00000548259 Q6ZRN7 208 aaPredicted RBP11.63□□□□□ -0.55
VPS29-204ENST00000548259 SMIM4Q8WVI0 70 aa11.63□□□□□ -0.55
VPS29-204ENST00000548259 TRGV2A0A075B6R0 118 aa11.62□□□□□ -0.55
VPS29-204ENST00000548259 A0A087X0K7 114 aa11.62□□□□□ -0.55
VPS29-204ENST00000548259 OR5G3P0C626 314 aa11.62□□□□□ -0.55
VPS29-204ENST00000548259 ANXA7P20073 488 aaKnown RBP11.62□□□□□ -0.55
VPS29-204ENST00000548259 SELENOTP62341 195 aa11.62□□□□□ -0.55
VPS29-204ENST00000548259 RABL2AQ9UBK7 228 aaPredicted RBP11.62□□□□□ -0.55
VPS29-204ENST00000548259 RABL2BQ9UNT1 228 aa11.62□□□□□ -0.55
VPS29-204ENST00000548259 SMCO3A2RU48 225 aa11.61□□□□□ -0.55
VPS29-204ENST00000548259 SLC25A6P12236 298 aa11.61□□□□□ -0.55
VPS29-204ENST00000548259 CXCL2P19875 107 aa11.61□□□□□ -0.55
VPS29-204ENST00000548259 DAZ2Q13117 558 aaKnown RBP11.61□□□□□ -0.55
VPS29-204ENST00000548259 CYP2G1PQ6ZSU1 146 aa11.61□□□□□ -0.55
VPS29-204ENST00000548259 CCDC190Q86UF4 302 aa11.61□□□□□ -0.55
VPS29-204ENST00000548259 MCUBQ9NWR8 336 aa11.61□□□□□ -0.55
VPS29-204ENST00000548259 A0A096LPF7 62 aa11.6□□□□□ -0.55
VPS29-204ENST00000548259 WRBO00258 174 aa11.6□□□□□ -0.55
VPS29-204ENST00000548259 SYNGR2O43760 224 aa11.6□□□□□ -0.55
VPS29-204ENST00000548259 PITX3O75364 302 aa11.6□□□□□ -0.55
VPS29-204ENST00000548259 SPANXN5Q5MJ07 72 aa11.6□□□□□ -0.55
VPS29-204ENST00000548259 LCN15Q6UWW0 184 aa11.6□□□□□ -0.55
VPS29-204ENST00000548259 Q6ZSN1 163 aa11.6□□□□□ -0.55
VPS29-204ENST00000548259 SLC50A1Q9BRV3 221 aa11.6□□□□□ -0.55
VPS29-204ENST00000548259 TMPRSS5Q9H3S3 457 aa11.6□□□□□ -0.55
VPS29-204ENST00000548259 STRAPQ9Y3F4 350 aaKnown RBP11.6□□□□□ -0.55
VPS29-204ENST00000548259 NXPH4O95158 308 aa11.59□□□□□ -0.55
VPS29-204ENST00000548259 LINC00869P0C866 280 aa11.59□□□□□ -0.55
VPS29-204ENST00000548259 GFI1BQ5VTD9 330 aa11.59□□□□□ -0.55
VPS29-204ENST00000548259 TMEM182Q6ZP80 229 aaPredicted RBP11.59□□□□□ -0.55
VPS29-204ENST00000548259 ACOT7LQ6ZUV0 252 aa11.59□□□□□ -0.55
VPS29-204ENST00000548259 TMED4Q7Z7H5 227 aa11.59□□□□□ -0.55
VPS29-204ENST00000548259 PYGO2Q9BRQ0 406 aa11.59□□□□□ -0.55
VPS29-204ENST00000548259 ICOSQ9Y6W8 199 aa11.59□□□□□ -0.55
VPS29-204ENST00000548259 MYCBP2O75592 4640 aa11.59□□□□□ -0.55
VPS29-204ENST00000548259 A0A087WTM6 91 aa11.58□□□□□ -0.56
VPS29-204ENST00000548259 PRSS46E5RG02 174 aa11.58□□□□□ -0.56
VPS29-204ENST00000548259 CTDSPLO15194 276 aa11.58□□□□□ -0.56
VPS29-204ENST00000548259 SMR3BP02814 79 aaPredicted RBP11.58□□□□□ -0.56
VPS29-204ENST00000548259 GCSHP23434 173 aa11.58□□□□□ -0.56
VPS29-204ENST00000548259 FUSP35637 526 aaKnown RBP eCLIP11.58□□□□□ -0.56
VPS29-204ENST00000548259 LEPP41159 167 aa11.58□□□□□ -0.56
VPS29-204ENST00000548259 PLP1P60201 277 aa11.58□□□□□ -0.56
VPS29-204ENST00000548259 KRTAP10-1P60331 282 aa11.58□□□□□ -0.56
VPS29-204ENST00000548259 IL18Q14116 193 aa11.58□□□□□ -0.56
VPS29-204ENST00000548259 FLG2Q5D862 2391 aaPredicted RBP11.58□□□□□ -0.56
VPS29-204ENST00000548259 K7EP13 123 aa11.57□□□□□ -0.56
VPS29-204ENST00000548259 Q6ZTI0 123 aa11.57□□□□□ -0.56
VPS29-204ENST00000548259 ZNF680Q8NEM1 530 aa11.57□□□□□ -0.56
VPS29-204ENST00000548259 ZNF331Q9NQX6 463 aaPredicted RBP11.57□□□□□ -0.56
VPS29-204ENST00000548259 MDFICQ9P1T7 246 aa11.57□□□□□ -0.56
VPS29-204ENST00000548259 FAT1Q14517 4588 aa11.56□□□□□ -0.56
VPS29-204ENST00000548259 ANKRD20A5PA0PJZ0 165 aa11.56□□□□□ -0.56
VPS29-204ENST00000548259 PMS2P5A8MQ11 134 aa11.56□□□□□ -0.56
VPS29-204ENST00000548259 PAX4O43316 350 aa11.56□□□□□ -0.56
VPS29-204ENST00000548259 SLAQ13239 276 aa11.56□□□□□ -0.56
VPS29-204ENST00000548259 TMEM128Q5BJH2 165 aa11.56□□□□□ -0.56
VPS29-204ENST00000548259 PXDC1Q5TGL8 231 aa11.56□□□□□ -0.56
VPS29-204ENST00000548259 VSIG2Q96IQ7 327 aa11.56□□□□□ -0.56
VPS29-204ENST00000548259 ARL6Q9H0F7 186 aa11.56□□□□□ -0.56
VPS29-204ENST00000548259 MIXL1Q9H2W2 232 aa11.56□□□□□ -0.56
VPS29-204ENST00000548259 TRAV12-3A0A0B4J271 114 aa11.55□□□□□ -0.56
VPS29-204ENST00000548259 H3BP45 60 aa11.55□□□□□ -0.56
VPS29-204ENST00000548259 VAMP1P23763 118 aa11.55□□□□□ -0.56
VPS29-204ENST00000548259 FAUP35544 74 aaKnown RBP11.55□□□□□ -0.56
VPS29-204ENST00000548259 BPIFA4PQ86YQ2 179 aa11.55□□□□□ -0.56
VPS29-204ENST00000548259 LRTM2Q8N967 370 aa11.55□□□□□ -0.56
VPS29-204ENST00000548259 DIRAS2Q96HU8 199 aa11.55□□□□□ -0.56
VPS29-204ENST00000548259 ARV1Q9H2C2 271 aa11.55□□□□□ -0.56
VPS29-204ENST00000548259 FUT9Q9Y231 359 aa11.55□□□□□ -0.56
VPS29-204ENST00000548259 PXMP4Q9Y6I8 212 aa11.55□□□□□ -0.56
VPS29-204ENST00000548259 LY96Q9Y6Y9 160 aa11.55□□□□□ -0.56
VPS29-204ENST00000548259 TRGV1A0A0A0MS02 117 aa11.54□□□□□ -0.56
VPS29-204ENST00000548259 J3KRW8 73 aa11.54□□□□□ -0.56
VPS29-204ENST00000548259 DNAH10OSP0CZ25 163 aa11.54□□□□□ -0.56
VPS29-204ENST00000548259 KIR3DS1Q14943 382 aa11.54□□□□□ -0.56
VPS29-204ENST00000548259 ODF3Q96PU9 254 aa11.54□□□□□ -0.56
VPS29-204ENST00000548259 RSL24D1Q9UHA3 163 aaKnown RBP11.54□□□□□ -0.56
VPS29-204ENST00000548259 NPIPB6E9PJ23 425 aa11.53□□□□□ -0.56
VPS29-204ENST00000548259 ZNF324O75467 553 aaPredicted RBP11.53□□□□□ -0.56
VPS29-204ENST00000548259 EVI2AP22794 236 aa11.53□□□□□ -0.56
VPS29-204ENST00000548259 MRPL23Q16540 153 aaKnown RBP11.53□□□□□ -0.56
VPS29-204ENST00000548259 CTF1Q16619 201 aa11.53□□□□□ -0.56
VPS29-204ENST00000548259 ZBTB8BQ8NAP8 495 aaPredicted RBP11.53□□□□□ -0.56
VPS29-204ENST00000548259 TMEM70Q9BUB7 260 aa11.53□□□□□ -0.56
VPS29-204ENST00000548259 PARD6GQ9BYG4 376 aaPredicted RBP11.53□□□□□ -0.56
VPS29-204ENST00000548259 NPVFQ9HCQ7 196 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms