RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 FAM78AQ5JUQ0 283 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 CLLU1OSQ5K130 101 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 Q6ZS49 121 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 LCA10Q71F78 164 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 LINC00596Q86U02 117 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 DRAM1Q8N682 238 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 C3orf56Q8N813 242 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 OR5C1Q8NGR4 320 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 STAG3L4Q8TBR4 150 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 RAB37Q96AX2 223 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 RBMXL1Q96E39 390 aaKnown RBP2.19□□□□□ -2.06
CD44-229ENST00000528672 PRELID3AQ96N28 172 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 MCEEQ96PE7 176 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 FAM60AQ9NP50 221 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 RABAC1Q9UI14 185 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 DNAJC15Q9Y5T4 150 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 SPCS1Q9Y6A9 102 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 SERP1Q9Y6X1 66 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 HLA-DRB4X5D2U9 266 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 NUP210LQ5VU65 1888 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 TRIP11Q15643 1979 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 SCN10AQ9Y5Y9 1956 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 VWA8A3KMH1 1905 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 TET2Q6N021 2002 aaPredicted RBP2.18□□□□□ -2.06
CD44-229ENST00000528672 GTF3C1Q12789 2109 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 TRANK1O15050 2925 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 LAMB4A4D0S4 1761 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 LTN1O94822 1766 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 ADAMTS13Q76LX8 1427 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 SETXQ7Z333 2677 aaKnown RBP2.18□□□□□ -2.06
CD44-229ENST00000528672 TRBV20OR9-2A0A075B6H5 130 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 TRAV9-1A0A075B6T8 112 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 IGKV1D-43A0A0B4J1Z2 117 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 IGHV1OR15-9A0A0B4J2B8 117 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 A0A0D9SEW6 157 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 TRBV27A0A0K0K1C4 114 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 RBAKDNA6NC62 111 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 DPRXA6NFQ7 191 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 C9JQL5 133 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 UBE2L6O14933 153 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 LYRM1O43325 122 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 SYNGR2O43760 224 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 ZNF73O43830 326 aaPredicted RBP2.18□□□□□ -2.06
CD44-229ENST00000528672 SNCGO76070 127 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 CST7O76096 145 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 NDUFB2O95178 105 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 RBP4P02753 201 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 CD3DP04234 171 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 INAFM2P0DMQ5 153 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 TPT1P13693 172 aaKnown RBP2.18□□□□□ -2.06
CD44-229ENST00000528672 COX7CP15954 63 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 CBLN1P23435 193 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 WFDC2Q14508 124 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 LINC01545Q5VT33 79 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 DPPA3Q6W0C5 159 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 TMEM91Q6ZNR0 172 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 PHF5AQ7RTV0 110 aaKnown RBP2.18□□□□□ -2.06
CD44-229ENST00000528672 BPIFA4PQ86YQ2 179 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 ZNF555Q8NEP9 628 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 OR10P1Q8NGE3 313 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 OR8A1Q8NGG7 326 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 MRPL30Q8TCC3 161 aaKnown RBP2.18□□□□□ -2.06
CD44-229ENST00000528672 C18orf32Q8TCD1 76 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 TOMM6Q96B49 74 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 MS4A6EQ96DS6 147 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 CCL13Q99616 98 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 TXNL4BQ9NX01 149 aaKnown RBP2.18□□□□□ -2.06
CD44-229ENST00000528672 CKLFQ9UBR5 152 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 TP73-AS1Q9UF72 201 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 LSM2Q9Y333 95 aaKnown RBP2.18□□□□□ -2.06
CD44-229ENST00000528672 CFTRP13569 1480 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 LRRC9Q6ZRR7 1453 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 CCDC88AQ3V6T2 1871 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 NUP210Q8TEM1 1887 aaPredicted RBP2.18□□□□□ -2.06
CD44-229ENST00000528672 TMEM131Q92545 1883 aa2.18□□□□□ -2.06
CD44-229ENST00000528672 DNMT1P26358 1616 aaKnown RBP2.17□□□□□ -2.06
CD44-229ENST00000528672 MYO5CQ9NQX4 1742 aa2.17□□□□□ -2.06
CD44-229ENST00000528672 NCKAP5O14513 1909 aa2.17□□□□□ -2.06
CD44-229ENST00000528672 MUC21A0A140T8X8 626 aa2.17□□□□□ -2.06
CD44-229ENST00000528672 PINLYPA6NC86 204 aa2.17□□□□□ -2.06
CD44-229ENST00000528672 ZNF860A6NHJ4 632 aa2.17□□□□□ -2.06
CD44-229ENST00000528672 PANO1I0J062 215 aa2.17□□□□□ -2.06
CD44-229ENST00000528672 COX7A2LO14548 114 aa2.17□□□□□ -2.06
CD44-229ENST00000528672 GNGT2O14610 69 aa2.17□□□□□ -2.06
CD44-229ENST00000528672 NDUFB3O43676 98 aa2.17□□□□□ -2.06
CD44-229ENST00000528672 ZNF737O75373 536 aa2.17□□□□□ -2.06
CD44-229ENST00000528672 APCSP02743 223 aa2.17□□□□□ -2.06
CD44-229ENST00000528672 ZNF688P0C7X2 276 aa2.17□□□□□ -2.06
CD44-229ENST00000528672 LGALS3P17931 250 aaKnown RBP2.17□□□□□ -2.06
CD44-229ENST00000528672 DAPP51397 102 aa2.17□□□□□ -2.06
CD44-229ENST00000528672 IGFBP7Q16270 282 aa2.17□□□□□ -2.06
CD44-229ENST00000528672 FBXL19-AS1Q494R0 122 aa2.17□□□□□ -2.06
CD44-229ENST00000528672 NMSQ5H8A3 153 aa2.17□□□□□ -2.06
CD44-229ENST00000528672 LGALS9CQ6DKI2 356 aa2.17□□□□□ -2.06
CD44-229ENST00000528672 FP248Q71RG6 208 aaPredicted RBP2.17□□□□□ -2.06
CD44-229ENST00000528672 MARCH3Q86UD3 253 aa2.17□□□□□ -2.06
CD44-229ENST00000528672 C15orf56Q8N910 161 aa2.17□□□□□ -2.06
CD44-229ENST00000528672 PPDPFLQ8WWR9 84 aa2.17□□□□□ -2.06
CD44-229ENST00000528672 COPS9Q8WXC6 57 aa2.17□□□□□ -2.06
CD44-229ENST00000528672 DSCR8Q96T75 97 aa2.17□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms