RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 GTSF1Q8WW33 167 aa8.16□□□□□ -1.1
PDGFRB-207ENST00000520579 SLC25A33Q9BSK2 321 aa8.16□□□□□ -1.1
PDGFRB-207ENST00000520579 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.15□□□□□ -1.1
PDGFRB-207ENST00000520579 ARMS2P0C7Q2 107 aa8.15□□□□□ -1.1
PDGFRB-207ENST00000520579 SAA2P0DJI9 122 aaPredicted RBP8.15□□□□□ -1.1
PDGFRB-207ENST00000520579 LINC00694P0DN24 101 aa8.15□□□□□ -1.1
PDGFRB-207ENST00000520579 DLX1P56177 255 aa8.15□□□□□ -1.1
PDGFRB-207ENST00000520579 Q6AWC8 147 aa8.15□□□□□ -1.1
PDGFRB-207ENST00000520579 MOGAT3Q86VF5 341 aa8.15□□□□□ -1.1
PDGFRB-207ENST00000520579 MBD6Q96DN6 1003 aa8.15□□□□□ -1.1
PDGFRB-207ENST00000520579 LRP4O75096 1905 aa8.15□□□□□ -1.1
PDGFRB-207ENST00000520579 NCKAP5O14513 1909 aa8.15□□□□□ -1.1
PDGFRB-207ENST00000520579 TRBV6-6A0A0A6YYG2 114 aa8.15□□□□□ -1.1
PDGFRB-207ENST00000520579 KLRD1Q13241 179 aa8.15□□□□□ -1.1
PDGFRB-207ENST00000520579 MRPL14Q6P1L8 145 aaKnown RBP8.15□□□□□ -1.1
PDGFRB-207ENST00000520579 C2orf91Q6ZV80 131 aa8.15□□□□□ -1.1
PDGFRB-207ENST00000520579 LINC00596Q86U02 117 aa8.15□□□□□ -1.1
PDGFRB-207ENST00000520579 FCN3O75636 299 aa8.15□□□□□ -1.11
PDGFRB-207ENST00000520579 SPRNQ5BIV9 151 aa8.15□□□□□ -1.11
PDGFRB-207ENST00000520579 FAM120AOSQ5T036 256 aa8.15□□□□□ -1.11
PDGFRB-207ENST00000520579 ITLN1Q8WWA0 313 aa8.15□□□□□ -1.11
PDGFRB-207ENST00000520579 RPP21Q9H633 154 aaKnown RBP8.15□□□□□ -1.11
PDGFRB-207ENST00000520579 COX8AP10176 69 aa8.14□□□□□ -1.11
PDGFRB-207ENST00000520579 LYZP61626 148 aa8.14□□□□□ -1.11
PDGFRB-207ENST00000520579 BCL6BQ8N143 479 aaPredicted RBP8.14□□□□□ -1.11
PDGFRB-207ENST00000520579 IGF2BP2-AS1Q96M15 143 aa8.14□□□□□ -1.11
PDGFRB-207ENST00000520579 IGHV3OR16-8A0A075B7F1 116 aa8.14□□□□□ -1.11
PDGFRB-207ENST00000520579 PRSS1P07477 247 aa8.14□□□□□ -1.11
PDGFRB-207ENST00000520579 EDN2P20800 178 aa8.14□□□□□ -1.11
PDGFRB-207ENST00000520579 FOXI1Q12951 378 aa8.14□□□□□ -1.11
PDGFRB-207ENST00000520579 HES1Q14469 280 aa8.14□□□□□ -1.11
PDGFRB-207ENST00000520579 Q8IYB0 196 aa8.14□□□□□ -1.11
PDGFRB-207ENST00000520579 ZADH2Q8N4Q0 377 aa8.14□□□□□ -1.11
PDGFRB-207ENST00000520579 SLC25A2Q9BXI2 301 aa8.14□□□□□ -1.11
PDGFRB-207ENST00000520579 PKIGQ9Y2B9 76 aa8.14□□□□□ -1.11
PDGFRB-207ENST00000520579 C15orf61A6NNL5 157 aa8.14□□□□□ -1.11
PDGFRB-207ENST00000520579 SRRM4A7MD48 611 aaKnown RBP8.14□□□□□ -1.11
PDGFRB-207ENST00000520579 C21orf140B9A014 251 aa8.14□□□□□ -1.11
PDGFRB-207ENST00000520579 TNFRSF13BO14836 293 aaPredicted RBP8.14□□□□□ -1.11
PDGFRB-207ENST00000520579 PRR20EP86478 221 aa8.14□□□□□ -1.11
PDGFRB-207ENST00000520579 PRR20CP86479 221 aa8.14□□□□□ -1.11
PDGFRB-207ENST00000520579 PRR20DP86480 221 aa8.14□□□□□ -1.11
PDGFRB-207ENST00000520579 PRR20BP86481 221 aa8.14□□□□□ -1.11
PDGFRB-207ENST00000520579 PRR20AP86496 221 aa8.14□□□□□ -1.11
PDGFRB-207ENST00000520579 ZNF146Q15072 292 aa8.14□□□□□ -1.11
PDGFRB-207ENST00000520579 FAM19A5Q7Z5A7 132 aaPredicted RBP8.14□□□□□ -1.11
PDGFRB-207ENST00000520579 C10orf126Q8N4M7 172 aa8.14□□□□□ -1.11
PDGFRB-207ENST00000520579 MRPL36Q9P0J6 103 aaKnown RBP8.14□□□□□ -1.11
PDGFRB-207ENST00000520579 AGRNO00468 2067 aa8.14□□□□□ -1.11
PDGFRB-207ENST00000520579 ZNF329Q86UD4 541 aa8.13□□□□□ -1.11
PDGFRB-207ENST00000520579 H1FXQ92522 213 aaKnown RBP8.13□□□□□ -1.11
PDGFRB-207ENST00000520579 DKK2Q9UBU2 259 aa8.13□□□□□ -1.11
PDGFRB-207ENST00000520579 SSUH2Q9Y2M2 353 aa8.13□□□□□ -1.11
PDGFRB-207ENST00000520579 NPIPB11E5RHQ5 1161 aa8.13□□□□□ -1.11
PDGFRB-207ENST00000520579 ATP1A1-AS1Q5TC04 95 aa8.13□□□□□ -1.11
PDGFRB-207ENST00000520579 GTSCR1Q86UQ5 136 aa8.13□□□□□ -1.11
PDGFRB-207ENST00000520579 RNF138Q8WVD3 245 aa8.13□□□□□ -1.11
PDGFRB-207ENST00000520579 CDIP1Q9H305 208 aa8.13□□□□□ -1.11
PDGFRB-207ENST00000520579 LOC107984156A0A0G2JMH3 177 aa8.13□□□□□ -1.11
PDGFRB-207ENST00000520579 E7EUB6 86 aa8.13□□□□□ -1.11
PDGFRB-207ENST00000520579 FXYD2P54710 66 aa8.13□□□□□ -1.11
PDGFRB-207ENST00000520579 DIAPH2-AS1Q14236 149 aa8.13□□□□□ -1.11
PDGFRB-207ENST00000520579 KRTAP27-1Q3LI81 207 aa8.13□□□□□ -1.11
PDGFRB-207ENST00000520579 ARL17AQ8IVW1 177 aa8.13□□□□□ -1.11
PDGFRB-207ENST00000520579 CALYQ9NYX4 217 aa8.13□□□□□ -1.11
PDGFRB-207ENST00000520579 RIF1Q5UIP0 2472 aaKnown RBP8.12□□□□□ -1.11
PDGFRB-207ENST00000520579 TMEM213A2RRL7 107 aa8.12□□□□□ -1.11
PDGFRB-207ENST00000520579 CCL13Q99616 98 aa8.12□□□□□ -1.11
PDGFRB-207ENST00000520579 ZCCHC24Q8N2G6 241 aaKnown RBP8.12□□□□□ -1.11
PDGFRB-207ENST00000520579 SMRP1Q8NCR6 262 aa8.12□□□□□ -1.11
PDGFRB-207ENST00000520579 IFI27L2Q9H2X8 130 aa8.12□□□□□ -1.11
PDGFRB-207ENST00000520579 LTBP2Q14767 1821 aa8.12□□□□□ -1.11
PDGFRB-207ENST00000520579 LTAP01374 205 aa8.12□□□□□ -1.11
PDGFRB-207ENST00000520579 C3orf36Q3SXR2 165 aa8.12□□□□□ -1.11
PDGFRB-207ENST00000520579 AMN1Q8IY45 258 aa8.12□□□□□ -1.11
PDGFRB-207ENST00000520579 IGFBPL1Q8WX77 278 aa8.12□□□□□ -1.11
PDGFRB-207ENST00000520579 EPDR1Q9UM22 224 aa8.12□□□□□ -1.11
PDGFRB-207ENST00000520579 D6R8Y8 96 aa8.11□□□□□ -1.11
PDGFRB-207ENST00000520579 OR2J3O76001 311 aa8.11□□□□□ -1.11
PDGFRB-207ENST00000520579 SAA1P0DJI8 122 aaPredicted RBP8.11□□□□□ -1.11
PDGFRB-207ENST00000520579 ERVK11-1P61568 191 aa8.11□□□□□ -1.11
PDGFRB-207ENST00000520579 SIGLEC15Q6ZMC9 328 aa8.11□□□□□ -1.11
PDGFRB-207ENST00000520579 KLK15Q9H2R5 256 aa8.11□□□□□ -1.11
PDGFRB-207ENST00000520579 LINC00312Q9Y6C7 94 aa8.11□□□□□ -1.11
PDGFRB-207ENST00000520579 CREBBPQ92793 2442 aa8.11□□□□□ -1.11
PDGFRB-207ENST00000520579 IGHV3-35A0A0C4DH35 117 aa8.11□□□□□ -1.11
PDGFRB-207ENST00000520579 PRSS46E5RG02 174 aa8.11□□□□□ -1.11
PDGFRB-207ENST00000520579 WISP2O76076 250 aa8.11□□□□□ -1.11
PDGFRB-207ENST00000520579 RBP4P02753 201 aa8.11□□□□□ -1.11
PDGFRB-207ENST00000520579 ERHP84090 104 aaKnown RBP8.11□□□□□ -1.11
PDGFRB-207ENST00000520579 ZNF414Q96IQ9 312 aa8.11□□□□□ -1.11
PDGFRB-207ENST00000520579 TTTY12Q9BZ98 90 aa8.11□□□□□ -1.11
PDGFRB-207ENST00000520579 COL6A6A6NMZ7 2263 aa8.11□□□□□ -1.11
PDGFRB-207ENST00000520579 TRAV8-2A0A0B4J237 113 aa8.11□□□□□ -1.11
PDGFRB-207ENST00000520579 NHLRC4P0CG21 123 aaPredicted RBP8.11□□□□□ -1.11
PDGFRB-207ENST00000520579 SEC61GP60059 68 aa8.11□□□□□ -1.11
PDGFRB-207ENST00000520579 PPP1R32Q7Z5V6 425 aa8.11□□□□□ -1.11
PDGFRB-207ENST00000520579 FAM216BQ8N7L0 139 aa8.11□□□□□ -1.11
PDGFRB-207ENST00000520579 RPUSD1Q9UJJ7 312 aaKnown RBP8.11□□□□□ -1.11
PDGFRB-207ENST00000520579 SMG1Q96Q15 3661 aaKnown RBP8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms