RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 FOXA3P55318 350 aaPredicted RBP8.37□□□□□ -1.07
USP4-214ENST00000491791 GNG5P63218 68 aa8.37□□□□□ -1.07
USP4-214ENST00000491791 PSG9Q00887 426 aa8.37□□□□□ -1.07
USP4-214ENST00000491791 USF2Q15853 346 aaPredicted RBP8.37□□□□□ -1.07
USP4-214ENST00000491791 Q5PR19 223 aa8.37□□□□□ -1.07
USP4-214ENST00000491791 TMEM136Q6ZRR5 245 aa8.37□□□□□ -1.07
USP4-214ENST00000491791 GBGT1Q8N5D6 347 aa8.37□□□□□ -1.07
USP4-214ENST00000491791 OR4B1Q8NGF8 309 aa8.37□□□□□ -1.07
USP4-214ENST00000491791 OR10D4PQ8NGN7 298 aa8.37□□□□□ -1.07
USP4-214ENST00000491791 NAT8BQ9UHF3 227 aa8.37□□□□□ -1.07
USP4-214ENST00000491791 MOB4Q9Y3A3 225 aa8.37□□□□□ -1.07
USP4-214ENST00000491791 TLN2Q9Y4G6 2542 aa8.36□□□□□ -1.07
USP4-214ENST00000491791 TRBV7-1A0A0A6YYK4 115 aa8.36□□□□□ -1.07
USP4-214ENST00000491791 TRAV34A0A0B4J273 112 aa8.36□□□□□ -1.07
USP4-214ENST00000491791 TRAV20A0A0B4J274 112 aa8.36□□□□□ -1.07
USP4-214ENST00000491791 ZNF705GA8MUZ8 300 aaPredicted RBP8.36□□□□□ -1.07
USP4-214ENST00000491791 OR2J3O76001 311 aa8.36□□□□□ -1.07
USP4-214ENST00000491791 IGF1P05019 195 aa8.36□□□□□ -1.07
USP4-214ENST00000491791 MGST1P10620 155 aaKnown RBP8.36□□□□□ -1.07
USP4-214ENST00000491791 SLC25A16P16260 332 aa8.36□□□□□ -1.07
USP4-214ENST00000491791 ATP5J2P56134 94 aa8.36□□□□□ -1.07
USP4-214ENST00000491791 JOSD1Q15040 202 aaPredicted RBP8.36□□□□□ -1.07
USP4-214ENST00000491791 Q56UQ5 140 aa8.36□□□□□ -1.07
USP4-214ENST00000491791 LEMD1Q68G75 181 aa8.36□□□□□ -1.07
USP4-214ENST00000491791 UNQ5815/PRO19632Q6UWF5 114 aa8.36□□□□□ -1.07
USP4-214ENST00000491791 PRSS57Q6UWY2 283 aa8.36□□□□□ -1.07
USP4-214ENST00000491791 Q86TA4 180 aa8.36□□□□□ -1.07
USP4-214ENST00000491791 OR5R1Q8NH85 324 aa8.36□□□□□ -1.07
USP4-214ENST00000491791 TMEM18Q96B42 140 aa8.36□□□□□ -1.07
USP4-214ENST00000491791 MRPL18Q9H0U6 180 aaKnown RBP8.36□□□□□ -1.07
USP4-214ENST00000491791 NIT2Q9NQR4 276 aa8.36□□□□□ -1.07
USP4-214ENST00000491791 GSN-AS1Q9NRJ2 163 aa8.36□□□□□ -1.07
USP4-214ENST00000491791 IGHV4-30-2A0A087WSY4 118 aa8.35□□□□□ -1.07
USP4-214ENST00000491791 A0A087X0K7 114 aa8.35□□□□□ -1.07
USP4-214ENST00000491791 A6NDX4 124 aa8.35□□□□□ -1.07
USP4-214ENST00000491791 FAM223BA6NKX1 122 aa8.35□□□□□ -1.07
USP4-214ENST00000491791 A8MWL6 223 aa8.35□□□□□ -1.07
USP4-214ENST00000491791 B4DSR2 109 aa8.35□□□□□ -1.07
USP4-214ENST00000491791 H3BUA1 57 aa8.35□□□□□ -1.07
USP4-214ENST00000491791 K7EQM0 130 aa8.35□□□□□ -1.07
USP4-214ENST00000491791 M0QZK8 103 aa8.35□□□□□ -1.07
USP4-214ENST00000491791 ATP6V0E1O15342 81 aa8.35□□□□□ -1.07
USP4-214ENST00000491791 LY6G6DO95868 133 aa8.35□□□□□ -1.07
USP4-214ENST00000491791 MSMBP08118 114 aa8.35□□□□□ -1.07
USP4-214ENST00000491791 FABP4P15090 132 aa8.35□□□□□ -1.07
USP4-214ENST00000491791 CBLN1P23435 193 aa8.35□□□□□ -1.07
USP4-214ENST00000491791 PAFAH1B2P68402 229 aa8.35□□□□□ -1.07
USP4-214ENST00000491791 OR10J3Q5JRS4 329 aa8.35□□□□□ -1.07
USP4-214ENST00000491791 C1orf194Q5T5A4 169 aa8.35□□□□□ -1.07
USP4-214ENST00000491791 FAM223AQ8IWN6 122 aa8.35□□□□□ -1.07
USP4-214ENST00000491791 CMTM2Q8TAZ6 248 aa8.35□□□□□ -1.07
USP4-214ENST00000491791 Q96MF0 132 aa8.35□□□□□ -1.07
USP4-214ENST00000491791 RPP21Q9H633 154 aaKnown RBP8.35□□□□□ -1.07
USP4-214ENST00000491791 RABAC1Q9UI14 185 aa8.35□□□□□ -1.07
USP4-214ENST00000491791 FN1P02751 2386 aaKnown RBP8.35□□□□□ -1.07
USP4-214ENST00000491791 CSPG4Q6UVK1 2322 aa8.35□□□□□ -1.07
USP4-214ENST00000491791 A0A096LNT2 108 aa8.34□□□□□ -1.07
USP4-214ENST00000491791 A0A1B0GXF2 115 aa8.34□□□□□ -1.07
USP4-214ENST00000491791 ZNF785A8K8V0 405 aa8.34□□□□□ -1.07
USP4-214ENST00000491791 SNURFLB1AK76 121 aa8.34□□□□□ -1.07
USP4-214ENST00000491791 DIRC3C9JPN6 131 aa8.34□□□□□ -1.07
USP4-214ENST00000491791 J3QLI3 93 aa8.34□□□□□ -1.07
USP4-214ENST00000491791 BMPR1BO00238 502 aa8.34□□□□□ -1.07
USP4-214ENST00000491791 SMAD7O15105 426 aaKnown RBP8.34□□□□□ -1.07
USP4-214ENST00000491791 IER3P46695 156 aa8.34□□□□□ -1.07
USP4-214ENST00000491791 RHOGP84095 191 aa8.34□□□□□ -1.07
USP4-214ENST00000491791 PSG3Q16557 428 aa8.34□□□□□ -1.07
USP4-214ENST00000491791 C15orf32Q32M92 178 aa8.34□□□□□ -1.07
USP4-214ENST00000491791 DMRTA1Q5VZB9 504 aa8.34□□□□□ -1.07
USP4-214ENST00000491791 KRTAP1-3Q8IUG1 177 aa8.34□□□□□ -1.07
USP4-214ENST00000491791 NUP35Q8NFH5 326 aa8.34□□□□□ -1.07
USP4-214ENST00000491791 EEF1AKMT3Q96AZ1 226 aa8.34□□□□□ -1.07
USP4-214ENST00000491791 ZFAND3Q9H8U3 227 aa8.34□□□□□ -1.07
USP4-214ENST00000491791 TP53TG3Q9ULZ0 132 aa8.34□□□□□ -1.07
USP4-214ENST00000491791 U3KQE9 123 aa8.34□□□□□ -1.07
USP4-214ENST00000491791 IGHG2P01859 326 aa8.33□□□□□ -1.08
USP4-214ENST00000491791 CRISP2P16562 243 aa8.33□□□□□ -1.08
USP4-214ENST00000491791 EXOC3-AS1Q8N2X6 119 aa8.33□□□□□ -1.08
USP4-214ENST00000491791 GATD1Q8NB37 220 aa8.33□□□□□ -1.08
USP4-214ENST00000491791 CCDC140Q96MF4 163 aa8.33□□□□□ -1.08
USP4-214ENST00000491791 NEU1Q99519 415 aa8.33□□□□□ -1.08
USP4-214ENST00000491791 ZNF331Q9NQX6 463 aaPredicted RBP8.33□□□□□ -1.08
USP4-214ENST00000491791 SERTAD4Q9NUC0 356 aa8.33□□□□□ -1.08
USP4-214ENST00000491791 COL6A5A8TX70 2615 aa8.33□□□□□ -1.08
USP4-214ENST00000491791 ATRQ13535 2644 aa8.32□□□□□ -1.08
USP4-214ENST00000491791 DNHD1Q96M86 4753 aa8.32□□□□□ -1.08
USP4-214ENST00000491791 TRAV41A0A0B4J266 112 aa8.32□□□□□ -1.08
USP4-214ENST00000491791 OR2T8A6NH00 312 aa8.32□□□□□ -1.08
USP4-214ENST00000491791 P01737 135 aa8.32□□□□□ -1.08
USP4-214ENST00000491791 FRMD6-AS1P0C7T7 363 aa8.32□□□□□ -1.08
USP4-214ENST00000491791 LINC00310P59036 64 aa8.32□□□□□ -1.08
USP4-214ENST00000491791 TOMM20LQ6UXN7 152 aa8.32□□□□□ -1.08
USP4-214ENST00000491791 LINC00322Q6ZN03 302 aaPredicted RBP8.32□□□□□ -1.08
USP4-214ENST00000491791 BCL6BQ8N143 479 aaPredicted RBP8.32□□□□□ -1.08
USP4-214ENST00000491791 NHLRC2Q8NBF2 726 aa8.32□□□□□ -1.08
USP4-214ENST00000491791 SPATA3Q8NHX4 192 aa8.32□□□□□ -1.08
USP4-214ENST00000491791 C17orf77Q96MU5 243 aa8.32□□□□□ -1.08
USP4-214ENST00000491791 PRDM13Q9H4Q3 707 aa8.32□□□□□ -1.08
USP4-214ENST00000491791 AAMDCQ9H7C9 122 aa8.32□□□□□ -1.08
USP4-214ENST00000491791 PSG8Q9UQ74 426 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms