RNA–Protein interactions for RNA: ENST00000489247.1

ATG4A-208, Transcript of autophagy related 4A cysteine peptidase, human

TSL 2

Gene ATG4A, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATG4A-208	ENST00000489247	UBE2C	O00762	179 aa		4.29	□□□□□ -1.72
ATG4A-208	ENST00000489247	GNG7	O60262	68 aa		4.29	□□□□□ -1.72
ATG4A-208	ENST00000489247	ZNF253	O75346	499 aa		4.29	□□□□□ -1.72
ATG4A-208	ENST00000489247	NUDT3	O95989	172 aa		4.29	□□□□□ -1.72
ATG4A-208	ENST00000489247	S100P	P25815	95 aa		4.29	□□□□□ -1.72
ATG4A-208	ENST00000489247	GALR1	P47211	349 aa		4.29	□□□□□ -1.72
ATG4A-208	ENST00000489247	GNG4	P50150	75 aa		4.29	□□□□□ -1.72
ATG4A-208	ENST00000489247	RAB9A	P51151	201 aa		4.29	□□□□□ -1.72
ATG4A-208	ENST00000489247	CNN1	P51911	297 aa	Known RBP	4.29	□□□□□ -1.72
ATG4A-208	ENST00000489247	LYZ	P61626	148 aa		4.29	□□□□□ -1.72
ATG4A-208	ENST00000489247	CFHR3	Q02985	330 aa		4.29	□□□□□ -1.72
ATG4A-208	ENST00000489247	KIAA0141	Q14154	515 aa	Predicted RBP	4.29	□□□□□ -1.72
ATG4A-208	ENST00000489247	CENPW	Q5EE01	88 aa		4.29	□□□□□ -1.72
ATG4A-208	ENST00000489247	COA6	Q5JTJ3	125 aa	Known RBP	4.29	□□□□□ -1.72
ATG4A-208	ENST00000489247	COX8C	Q7Z4L0	72 aa		4.29	□□□□□ -1.72
ATG4A-208	ENST00000489247	BPIFA4P	Q86YQ2	179 aa		4.29	□□□□□ -1.72
ATG4A-208	ENST00000489247	OR10G8	Q8NGN5	311 aa		4.29	□□□□□ -1.72
ATG4A-208	ENST00000489247	ATG101	Q9BSB4	218 aa		4.29	□□□□□ -1.72
ATG4A-208	ENST00000489247	IL36B	Q9NZH7	164 aa		4.29	□□□□□ -1.72
ATG4A-208	ENST00000489247		V9GYV3	84 aa		4.29	□□□□□ -1.72
ATG4A-208	ENST00000489247	ABCA2	Q9BZC7	2435 aa		4.29	□□□□□ -1.72
ATG4A-208	ENST00000489247		A0A087X0K7	114 aa		4.28	□□□□□ -1.72
ATG4A-208	ENST00000489247	IGHV3-21	A0A0B4J1V1	117 aa		4.28	□□□□□ -1.72
ATG4A-208	ENST00000489247	TRAV41	A0A0B4J266	112 aa		4.28	□□□□□ -1.72
ATG4A-208	ENST00000489247	SERTM2	A0A1B0GWG4	89 aa		4.28	□□□□□ -1.72
ATG4A-208	ENST00000489247	FBLL1	A6NHQ2	334 aa	Known RBP	4.28	□□□□□ -1.72
ATG4A-208	ENST00000489247	ZNF98	A6NK75	572 aa		4.28	□□□□□ -1.72
ATG4A-208	ENST00000489247	OR2J3	O76001	311 aa		4.28	□□□□□ -1.72
ATG4A-208	ENST00000489247	LTA	P01374	205 aa		4.28	□□□□□ -1.72
ATG4A-208	ENST00000489247	IL4	P05112	153 aa		4.28	□□□□□ -1.72
ATG4A-208	ENST00000489247	RPS10	P46783	165 aa	Known RBP	4.28	□□□□□ -1.72
ATG4A-208	ENST00000489247	RHOG	P84095	191 aa		4.28	□□□□□ -1.72
ATG4A-208	ENST00000489247	USF2	Q15853	346 aa	Predicted RBP	4.28	□□□□□ -1.72
ATG4A-208	ENST00000489247	KCNIP4	Q6PIL6	250 aa		4.28	□□□□□ -1.72
ATG4A-208	ENST00000489247	C16orf54	Q6UWD8	224 aa		4.28	□□□□□ -1.72
ATG4A-208	ENST00000489247	UNQ5815/PRO19632	Q6UWF5	114 aa		4.28	□□□□□ -1.72
ATG4A-208	ENST00000489247	BRD3OS	Q6XYD6	125 aa		4.28	□□□□□ -1.72
ATG4A-208	ENST00000489247	SIGLEC15	Q6ZMC9	328 aa		4.28	□□□□□ -1.72
ATG4A-208	ENST00000489247	OR5T1	Q8NG75	326 aa		4.28	□□□□□ -1.72
ATG4A-208	ENST00000489247	OR4F17	Q8NGA8	305 aa		4.28	□□□□□ -1.72
ATG4A-208	ENST00000489247	GLMP	Q8WWB7	406 aa		4.28	□□□□□ -1.72
ATG4A-208	ENST00000489247	NRGN	Q92686	78 aa		4.28	□□□□□ -1.72
ATG4A-208	ENST00000489247	FMC1	Q96HJ9	113 aa		4.28	□□□□□ -1.72
ATG4A-208	ENST00000489247	GPR82	Q96P67	336 aa		4.28	□□□□□ -1.72
ATG4A-208	ENST00000489247	CHRDL1	Q9BU40	450 aa		4.28	□□□□□ -1.72
ATG4A-208	ENST00000489247	ZNF586	Q9NXT0	402 aa		4.28	□□□□□ -1.72
ATG4A-208	ENST00000489247	ZNF492	Q9P255	531 aa		4.28	□□□□□ -1.72
ATG4A-208	ENST00000489247	TNFRSF18	Q9Y5U5	241 aa		4.28	□□□□□ -1.72
ATG4A-208	ENST00000489247	PTPN13	Q12923	2485 aa		4.28	□□□□□ -1.72
ATG4A-208	ENST00000489247	AKAP6	Q13023	2319 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	FBN2	P35556	2912 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	LRBA	P50851	2863 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	SMIM27	A0A1W2PRY6	76 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	ZNF320	A2RRD8	509 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	CLPSL1	A2RUU4	121 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	PGPEP1L	A6NFU8	196 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	LINC01548	A6NM66	108 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	PPP5D1	E7EU14	171 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	HIST1H2BK	O60814	126 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	TCRA	P04437	139 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	HIST1H2BJ	P06899	126 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	IGHV4-31	P0DP07	118 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	PLA2G2A	P14555	144 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	RPL7	P18124	248 aa	Known RBP	4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	HIST1H2BO	P23527	126 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	HIST1H2BB	P33778	126 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	MEOX2	P50222	304 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	HIST1H2BD	P58876	126 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	KRTAP10-9	P60411	292 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	HIST1H2BC	P62807	126 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	HIST2H2BE	Q16778	126 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	C15orf32	Q32M92	178 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	COX19	Q49B96	90 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247		Q56UQ5	140 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	ACTL10	Q5JWF8	245 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	HIST2H2BF	Q5QNW6	126 aa	Predicted RBP	4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	C1orf194	Q5T5A4	169 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	TMEM75	Q8N9X5	138 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	OR5R1	Q8NH85	324 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	HIST1H2BH	Q93079	126 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	EEF1AKMT3	Q96AZ1	226 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	DAZAP1	Q96EP5	407 aa	Known RBP	4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	USMG5	Q96IX5	58 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	HIST1H2BN	Q99877	126 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	HIST1H2BM	Q99879	126 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	PRSS22	Q9GZN4	317 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247		Q9H3A6	140 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	TMEM160	Q9NX00	188 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	URGCP-MRPS24	S4R325	110 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	SPG11	Q96JI7	2443 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	NAV2	Q8IVL1	2488 aa		4.27	□□□□□ -1.73
ATG4A-208	ENST00000489247	ARHGAP32	A7KAX9	2087 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	FAM208B	Q5VWN6	2430 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	MED13L	Q71F56	2210 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	IGHV3OR16-10	A0A075B7F0	116 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	C19orf71	A6NCJ1	209 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	FAM231B	A6NCW3	169 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247	PGP	A6NDG6	321 aa		4.26	□□□□□ -1.73
ATG4A-208	ENST00000489247		G3V318	75 aa		4.26	□□□□□ -1.73

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