RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 FUT9Q9Y231 359 aa6.21□□□□□ -1.42
COL17A1-207ENST00000488320 TRAV5A0A0B4J249 113 aa6.2□□□□□ -1.42
COL17A1-207ENST00000488320 TRAV12-3A0A0B4J271 114 aa6.2□□□□□ -1.42
COL17A1-207ENST00000488320 CXCL3P19876 107 aa6.2□□□□□ -1.42
COL17A1-207ENST00000488320 GATA2P23769 480 aaPredicted RBP6.2□□□□□ -1.42
COL17A1-207ENST00000488320 ATP5IP56385 69 aaPredicted RBP6.2□□□□□ -1.42
COL17A1-207ENST00000488320 SCGB2B2Q4G0G5 96 aa6.2□□□□□ -1.42
COL17A1-207ENST00000488320 RNASE10Q5GAN6 216 aaKnown RBP6.2□□□□□ -1.42
COL17A1-207ENST00000488320 GFI1BQ5VTD9 330 aa6.2□□□□□ -1.42
COL17A1-207ENST00000488320 LHFPL1Q86WI0 220 aa6.2□□□□□ -1.42
COL17A1-207ENST00000488320 LHFPL5Q8TAF8 219 aa6.2□□□□□ -1.42
COL17A1-207ENST00000488320 GLYATL2Q8WU03 294 aa6.2□□□□□ -1.42
COL17A1-207ENST00000488320 GSN-AS1Q9NRJ2 163 aa6.2□□□□□ -1.42
COL17A1-207ENST00000488320 HHLA3Q9XRX5 114 aa6.2□□□□□ -1.42
COL17A1-207ENST00000488320 RCL1Q9Y2P8 373 aaKnown RBP6.2□□□□□ -1.42
COL17A1-207ENST00000488320 CRYM-AS1A6NIL9 109 aa6.19□□□□□ -1.42
COL17A1-207ENST00000488320 E5RGE8 158 aa6.19□□□□□ -1.42
COL17A1-207ENST00000488320 RPL7P18124 248 aaKnown RBP6.19□□□□□ -1.42
COL17A1-207ENST00000488320 SRIP30626 198 aa6.19□□□□□ -1.42
COL17A1-207ENST00000488320 RAP2BP61225 183 aa6.19□□□□□ -1.42
COL17A1-207ENST00000488320 ZNF415Q09FC8 603 aa6.19□□□□□ -1.42
COL17A1-207ENST00000488320 GPR107Q5VW38 600 aa6.19□□□□□ -1.42
COL17A1-207ENST00000488320 THAP8Q8NA92 274 aa6.19□□□□□ -1.42
COL17A1-207ENST00000488320 OR13C8Q8NGS7 320 aa6.19□□□□□ -1.42
COL17A1-207ENST00000488320 TERB2Q8NHR7 220 aa6.19□□□□□ -1.42
COL17A1-207ENST00000488320 MARCH1Q8TCQ1 289 aa6.19□□□□□ -1.42
COL17A1-207ENST00000488320 IL22RA2Q969J5 263 aa6.19□□□□□ -1.42
COL17A1-207ENST00000488320 C8orf49Q96NF6 230 aa6.19□□□□□ -1.42
COL17A1-207ENST00000488320 PYGO2Q9BRQ0 406 aa6.19□□□□□ -1.42
COL17A1-207ENST00000488320 NAA60Q9H7X0 242 aa6.19□□□□□ -1.42
COL17A1-207ENST00000488320 Q9HAA7 133 aa6.19□□□□□ -1.42
COL17A1-207ENST00000488320 C14orf166Q9Y224 244 aaKnown RBP6.19□□□□□ -1.42
COL17A1-207ENST00000488320 PKHD1L1Q86WI1 4243 aa6.18□□□□□ -1.42
COL17A1-207ENST00000488320 IGKV1OR2-108A0A075B7D4 117 aa6.18□□□□□ -1.42
COL17A1-207ENST00000488320 RS1O15537 224 aa6.18□□□□□ -1.42
COL17A1-207ENST00000488320 CD3DP04234 171 aa6.18□□□□□ -1.42
COL17A1-207ENST00000488320 ANXA7P20073 488 aaKnown RBP6.18□□□□□ -1.42
COL17A1-207ENST00000488320 CRYBA4P53673 196 aa6.18□□□□□ -1.42
COL17A1-207ENST00000488320 GABARAPL2P60520 117 aa6.18□□□□□ -1.42
COL17A1-207ENST00000488320 Q6ZSA8 131 aa6.18□□□□□ -1.42
COL17A1-207ENST00000488320 SCXQ7RTU7 201 aa6.18□□□□□ -1.42
COL17A1-207ENST00000488320 LRTM2Q8N967 370 aa6.18□□□□□ -1.42
COL17A1-207ENST00000488320 ZNF680Q8NEM1 530 aa6.18□□□□□ -1.42
COL17A1-207ENST00000488320 OR1S1Q8NH92 325 aa6.18□□□□□ -1.42
COL17A1-207ENST00000488320 PCNPQ8WW12 178 aaKnown RBP6.18□□□□□ -1.42
COL17A1-207ENST00000488320 COMMD3Q9UBI1 195 aa6.18□□□□□ -1.42
COL17A1-207ENST00000488320 TRGV4A0A0C4DH28 118 aa6.17□□□□□ -1.42
COL17A1-207ENST00000488320 GYPEP15421 78 aa6.17□□□□□ -1.42
COL17A1-207ENST00000488320 LEPP41159 167 aa6.17□□□□□ -1.42
COL17A1-207ENST00000488320 ASIPP42127 132 aa6.17□□□□□ -1.42
COL17A1-207ENST00000488320 CCR6P51684 374 aa6.17□□□□□ -1.42
COL17A1-207ENST00000488320 SMCO1Q147U7 214 aa6.17□□□□□ -1.42
COL17A1-207ENST00000488320 TMEM182Q6ZP80 229 aaPredicted RBP6.17□□□□□ -1.42
COL17A1-207ENST00000488320 ZBTB8BQ8NAP8 495 aaPredicted RBP6.17□□□□□ -1.42
COL17A1-207ENST00000488320 ST6GAL2Q96JF0 529 aa6.17□□□□□ -1.42
COL17A1-207ENST00000488320 DNAJC4Q9NNZ3 241 aa6.17□□□□□ -1.42
COL17A1-207ENST00000488320 HSPB7Q9UBY9 170 aa6.17□□□□□ -1.42
COL17A1-207ENST00000488320 HIGD1AQ9Y241 93 aa6.17□□□□□ -1.42
COL17A1-207ENST00000488320 LRP2P98164 4655 aa6.17□□□□□ -1.42
COL17A1-207ENST00000488320 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.16□□□□□ -1.42
COL17A1-207ENST00000488320 H3BRN7 92 aa6.16□□□□□ -1.42
COL17A1-207ENST00000488320 K7EQD1 137 aa6.16□□□□□ -1.42
COL17A1-207ENST00000488320 SPINK4O60575 86 aa6.16□□□□□ -1.42
COL17A1-207ENST00000488320 HYPMO75409 117 aa6.16□□□□□ -1.42
COL17A1-207ENST00000488320 IL5P05113 134 aa6.16□□□□□ -1.42
COL17A1-207ENST00000488320 SNRPCP09234 159 aaKnown RBP6.16□□□□□ -1.42
COL17A1-207ENST00000488320 OR5G3P0C626 314 aa6.16□□□□□ -1.42
COL17A1-207ENST00000488320 IAPPP10997 89 aa6.16□□□□□ -1.42
COL17A1-207ENST00000488320 AKR1C4P17516 323 aa6.16□□□□□ -1.42
COL17A1-207ENST00000488320 TGFBR1P36897 503 aa6.16□□□□□ -1.42
COL17A1-207ENST00000488320 RPS19P39019 145 aaKnown RBP6.16□□□□□ -1.42
COL17A1-207ENST00000488320 KRTAP10-4P60372 401 aaPredicted RBP6.16□□□□□ -1.42
COL17A1-207ENST00000488320 FHL2Q14192 279 aa6.16□□□□□ -1.42
COL17A1-207ENST00000488320 S100A7AQ86SG5 101 aa6.16□□□□□ -1.42
COL17A1-207ENST00000488320 ZNF431Q8TF32 576 aaPredicted RBP6.16□□□□□ -1.42
COL17A1-207ENST00000488320 RTBDNQ9BSG5 229 aaPredicted RBP6.16□□□□□ -1.42
COL17A1-207ENST00000488320 SHANK2-AS3Q9BTD1 123 aa6.16□□□□□ -1.42
COL17A1-207ENST00000488320 MRPL32Q9BYC8 188 aaKnown RBP6.16□□□□□ -1.42
COL17A1-207ENST00000488320 KCNIP3Q9Y2W7 256 aa6.16□□□□□ -1.42
COL17A1-207ENST00000488320 KLF12Q9Y4X4 402 aa6.16□□□□□ -1.42
COL17A1-207ENST00000488320 A0A087X0K7 114 aa6.15□□□□□ -1.42
COL17A1-207ENST00000488320 IGHV3-38A0A0C4DH36 116 aa6.15□□□□□ -1.42
COL17A1-207ENST00000488320 IBA57-AS1B1ANH7 110 aa6.15□□□□□ -1.42
COL17A1-207ENST00000488320 PRAC2D3DTV9 90 aa6.15□□□□□ -1.42
COL17A1-207ENST00000488320 IGLV2-8P01709 118 aa6.15□□□□□ -1.42
COL17A1-207ENST00000488320 AKR1C1Q04828 323 aa6.15□□□□□ -1.42
COL17A1-207ENST00000488320 ACOT6Q3I5F7 207 aaPredicted RBP6.15□□□□□ -1.42
COL17A1-207ENST00000488320 EIF4E3Q8N5X7 224 aaKnown RBP6.15□□□□□ -1.42
COL17A1-207ENST00000488320 NRG4Q8WWG1 115 aa6.15□□□□□ -1.42
COL17A1-207ENST00000488320 CHAC1Q9BUX1 264 aa6.15□□□□□ -1.42
COL17A1-207ENST00000488320 TM2D2Q9BX73 214 aa6.15□□□□□ -1.42
COL17A1-207ENST00000488320 MRPL16Q9NX20 251 aaKnown RBP6.15□□□□□ -1.42
COL17A1-207ENST00000488320 PRR13Q9NZ81 148 aa6.15□□□□□ -1.42
COL17A1-207ENST00000488320 SMCO3A2RU48 225 aa6.14□□□□□ -1.43
COL17A1-207ENST00000488320 PMS2P5A8MQ11 134 aa6.14□□□□□ -1.43
COL17A1-207ENST00000488320 LECT2O14960 151 aa6.14□□□□□ -1.43
COL17A1-207ENST00000488320 RAB3DO95716 219 aa6.14□□□□□ -1.43
COL17A1-207ENST00000488320 APOA1P02647 267 aa6.14□□□□□ -1.43
COL17A1-207ENST00000488320 CT45A10P0DMU9 189 aa6.14□□□□□ -1.43
COL17A1-207ENST00000488320 TBPP20226 339 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms