RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 OR8D2Q9GZM6 311 aa1.77□□□□□ -2.13
VPS41-213ENST00000485955 WDR61Q9GZS3 305 aaKnown RBP1.77□□□□□ -2.13
VPS41-213ENST00000485955 C11orf68Q9H3H3 251 aaKnown RBP1.77□□□□□ -2.13
VPS41-213ENST00000485955 RPP21Q9H633 154 aaKnown RBP1.77□□□□□ -2.13
VPS41-213ENST00000485955 PLEKHF2Q9H8W4 249 aa1.77□□□□□ -2.13
VPS41-213ENST00000485955 NIT2Q9NQR4 276 aa1.77□□□□□ -2.13
VPS41-213ENST00000485955 CA10Q9NS85 328 aa1.77□□□□□ -2.13
VPS41-213ENST00000485955 MRPL16Q9NX20 251 aaKnown RBP1.77□□□□□ -2.13
VPS41-213ENST00000485955 TAC3Q9UHF0 121 aa1.77□□□□□ -2.13
VPS41-213ENST00000485955 NAT8BQ9UHF3 227 aa1.77□□□□□ -2.13
VPS41-213ENST00000485955 MCTS1Q9ULC4 181 aaKnown RBP1.77□□□□□ -2.13
VPS41-213ENST00000485955 HS3ST2Q9Y278 367 aa1.77□□□□□ -2.13
VPS41-213ENST00000485955 AMMECR1Q9Y4X0 333 aaPredicted RBP1.77□□□□□ -2.13
VPS41-213ENST00000485955 EML5Q05BV3 1969 aa1.77□□□□□ -2.13
VPS41-213ENST00000485955 DOCK1Q14185 1865 aa1.77□□□□□ -2.13
VPS41-213ENST00000485955 SIPA1L1O43166 1804 aa1.77□□□□□ -2.13
VPS41-213ENST00000485955 ATAD5Q96QE3 1844 aa1.77□□□□□ -2.13
VPS41-213ENST00000485955 SDK2Q58EX2 2172 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 MICAL3Q7RTP6 2002 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 MCM3APO60318 1980 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 NAV1Q8NEY1 1877 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 C20orf202A1L168 122 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 A8MUN3 132 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 C9JQL5 133 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 H7BYZ3 331 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 K7EM74 188 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 OVOL1O14753 267 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 DPM2O94777 84 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 LTAP01374 205 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 UCHL1P09936 223 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 P0DMU3 169 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 FAM231AP0DMU4 169 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 FAM231CP0DMU5 169 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 BCL2P10415 239 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 OPRM1P35372 400 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 OPRK1P41145 380 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 CA7P43166 264 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 DAPP51397 102 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 ZNF83P51522 516 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 RPS11P62280 158 aaKnown RBP eCLIP1.76□□□□□ -2.13
VPS41-213ENST00000485955 FKBP1AP62942 108 aaKnown RBP1.76□□□□□ -2.13
VPS41-213ENST00000485955 PPP3R1P63098 170 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 RELAQ04206 551 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 BIKQ13323 160 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 MPV17L2Q567V2 206 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 LYRM7Q5U5X0 104 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 EBLN2Q6P2I7 272 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 GUSBP11Q6P575 273 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 Q6Q795 121 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 KTN1-AS1Q86SY8 53 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 WDR86Q86TI4 376 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 PDZD9Q8IXQ8 264 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 ZNF645Q8N7E2 425 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 LINC00304Q8N9R0 145 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 OR52R1Q8NGF1 315 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 OR10D4PQ8NGN7 298 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 ZNF418Q8TF45 676 aaPredicted RBP1.76□□□□□ -2.13
VPS41-213ENST00000485955 DERL3Q96Q80 235 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 PRADC1Q9BSG0 188 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 FAIMQ9NVQ4 179 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 TVP23BQ9NYZ1 205 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 ZNF492Q9P255 531 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 AK3Q9UIJ7 227 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 PCTPQ9UKL6 214 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 MRPS16Q9Y3D3 137 aaKnown RBP1.76□□□□□ -2.13
VPS41-213ENST00000485955 SPAG17Q6Q759 2223 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 MIA3Q5JRA6 1907 aa1.76□□□□□ -2.13
VPS41-213ENST00000485955 BAZ2AQ9UIF9 1905 aaKnown RBP1.76□□□□□ -2.13
VPS41-213ENST00000485955 PARP14Q460N5 1801 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 DOCK2Q92608 1830 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 MGAM2Q2M2H8 2515 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 SCN1AP35498 2009 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 TRBV20OR9-2A0A075B6H5 130 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 TRAV9-1A0A075B6T8 112 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 IGKV1-6A0A0C4DH72 117 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 LINC00862A6NCI5 91 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 LY6LH3BQJ8 138 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 GABARAPH6UMI1 98 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 J3QKU1 62 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 J3QQQ9 107 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 SCO1O75880 301 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 NRASP01111 189 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 IFNA17P01571 189 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 IGKV1-39P01597 117 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 HLA-DQB1P01920 261 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 IGKV1D-39P04432 117 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 SEC11BP0C7V7 166 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 S100A2P29034 98 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 CXCL12P48061 93 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 TAS2R20P59543 309 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 HOXC5Q00444 222 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 TMEM241Q24JQ0 296 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 VMA21Q3ZAQ7 101 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 Q5XG85 94 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 NTM-AS1Q6ZSK4 140 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 LHFPL1Q86WI0 220 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 PRR15Q8IV56 129 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 SLC25A29Q8N8R3 303 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 ZDHHC22Q8N966 263 aa1.75□□□□□ -2.13
VPS41-213ENST00000485955 OR4K5Q8NGD3 323 aa1.75□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms