RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-215ENST00000460912 ZNF491Q8N8L2 437 aa6.87□□□□□ -1.31
SYNE1-215ENST00000460912 GPR82Q96P67 336 aa6.87□□□□□ -1.31
SYNE1-215ENST00000460912 SLC25A39Q9BZJ4 359 aaPredicted RBP6.87□□□□□ -1.31
SYNE1-215ENST00000460912 ABCA2Q9BZC7 2435 aa6.86□□□□□ -1.31
SYNE1-215ENST00000460912 TRBV19A0A075B6N1 114 aa6.86□□□□□ -1.31
SYNE1-215ENST00000460912 LYNX1G3V0Z9 82 aa6.86□□□□□ -1.31
SYNE1-215ENST00000460912 COX7A2P2O60397 106 aa6.86□□□□□ -1.31
SYNE1-215ENST00000460912 IGHV3-48P01763 117 aa6.86□□□□□ -1.31
SYNE1-215ENST00000460912 LYNX1P0DP58 116 aa6.86□□□□□ -1.31
SYNE1-215ENST00000460912 PSG1P11464 419 aa6.86□□□□□ -1.31
SYNE1-215ENST00000460912 SAMD13Q5VXD3 122 aa6.86□□□□□ -1.31
SYNE1-215ENST00000460912 TTC9CQ8N5M4 171 aa6.86□□□□□ -1.31
SYNE1-215ENST00000460912 MIEN1Q9BRT3 115 aa6.86□□□□□ -1.31
SYNE1-215ENST00000460912 OTORQ9NRC9 128 aa6.86□□□□□ -1.31
SYNE1-215ENST00000460912 NAT8BQ9UHF3 227 aa6.86□□□□□ -1.31
SYNE1-215ENST00000460912 U3KQK5 164 aa6.86□□□□□ -1.31
SYNE1-215ENST00000460912 HAX1O00165 279 aa6.86□□□□□ -1.31
SYNE1-215ENST00000460912 TIGITQ495A1 244 aa6.86□□□□□ -1.31
SYNE1-215ENST00000460912 C5orf17Q8NAS9 161 aa6.86□□□□□ -1.31
SYNE1-215ENST00000460912 ZNF738Q8NE65 137 aa6.86□□□□□ -1.31
SYNE1-215ENST00000460912 SRSF12Q8WXF0 261 aaKnown RBP6.86□□□□□ -1.31
SYNE1-215ENST00000460912 GSX1Q9H4S2 264 aaPredicted RBP6.86□□□□□ -1.31
SYNE1-215ENST00000460912 NRN1Q9NPD7 142 aa6.86□□□□□ -1.31
SYNE1-215ENST00000460912 NBEAP1P0C6P0 100 aa6.86□□□□□ -1.31
SYNE1-215ENST00000460912 NDPQ00604 133 aa6.86□□□□□ -1.31
SYNE1-215ENST00000460912 EBLN2Q6P2I7 272 aa6.86□□□□□ -1.31
SYNE1-215ENST00000460912 HSPB9Q9BQS6 159 aa6.86□□□□□ -1.31
SYNE1-215ENST00000460912 AKAP6Q13023 2319 aa6.85□□□□□ -1.31
SYNE1-215ENST00000460912 BRS3P32247 399 aa6.85□□□□□ -1.31
SYNE1-215ENST00000460912 ANXA2RQ3ZCQ2 193 aa6.85□□□□□ -1.31
SYNE1-215ENST00000460912 LYPD1Q8N2G4 141 aa6.85□□□□□ -1.31
SYNE1-215ENST00000460912 SIRPDQ9H106 197 aa6.85□□□□□ -1.31
SYNE1-215ENST00000460912 Q9H3A6 140 aa6.85□□□□□ -1.31
SYNE1-215ENST00000460912 TBL2Q9Y4P3 447 aaKnown RBP6.85□□□□□ -1.31
SYNE1-215ENST00000460912 SOX21Q9Y651 276 aaPredicted RBP6.85□□□□□ -1.31
SYNE1-215ENST00000460912 SNAI2O43623 268 aa6.85□□□□□ -1.31
SYNE1-215ENST00000460912 CD3EP07766 207 aa6.85□□□□□ -1.31
SYNE1-215ENST00000460912 ZNF493Q6ZR52 646 aa6.85□□□□□ -1.31
SYNE1-215ENST00000460912 H1FXQ92522 213 aaKnown RBP6.85□□□□□ -1.31
SYNE1-215ENST00000460912 DPF1Q92782 380 aa6.85□□□□□ -1.31
SYNE1-215ENST00000460912 NDFIP1Q9BT67 221 aa6.85□□□□□ -1.31
SYNE1-215ENST00000460912 WNT10AQ9GZT5 417 aa6.85□□□□□ -1.31
SYNE1-215ENST00000460912 RPP21Q9H633 154 aaKnown RBP6.85□□□□□ -1.31
SYNE1-215ENST00000460912 SMAD5-AS1Q9Y6J3 95 aa6.85□□□□□ -1.31
SYNE1-215ENST00000460912 CMYA5Q8N3K9 4069 aa6.85□□□□□ -1.31
SYNE1-215ENST00000460912 ACACBO00763 2458 aa6.85□□□□□ -1.31
SYNE1-215ENST00000460912 IGHV3-72A0A0B4J1Y9 119 aa6.85□□□□□ -1.31
SYNE1-215ENST00000460912 SERTM2A0A1B0GWG4 89 aa6.85□□□□□ -1.31
SYNE1-215ENST00000460912 CCL25O15444 150 aa6.85□□□□□ -1.31
SYNE1-215ENST00000460912 ZNF207O43670 478 aaKnown RBP6.85□□□□□ -1.31
SYNE1-215ENST00000460912 C3orf79P0CE67 100 aa6.85□□□□□ -1.31
SYNE1-215ENST00000460912 PF4V1P10720 104 aa6.85□□□□□ -1.31
SYNE1-215ENST00000460912 ARL3P36405 182 aa6.85□□□□□ -1.31
SYNE1-215ENST00000460912 LHFPL4Q7Z7J7 247 aa6.85□□□□□ -1.31
SYNE1-215ENST00000460912 MUC15Q8N387 334 aa6.85□□□□□ -1.31
SYNE1-215ENST00000460912 PIP4P2Q8N4L2 257 aa6.85□□□□□ -1.31
SYNE1-215ENST00000460912 RAB37Q96AX2 223 aa6.85□□□□□ -1.31
SYNE1-215ENST00000460912 PPIAL4CA0A0B4J2A2 164 aa6.84□□□□□ -1.31
SYNE1-215ENST00000460912 HIGD1CA8MV81 97 aa6.84□□□□□ -1.31
SYNE1-215ENST00000460912 PPIAL4GP0DN37 164 aa6.84□□□□□ -1.31
SYNE1-215ENST00000460912 SRIP30626 198 aa6.84□□□□□ -1.31
SYNE1-215ENST00000460912 OR4F17Q8NGA8 305 aa6.84□□□□□ -1.31
SYNE1-215ENST00000460912 ICE1Q9Y2F5 2266 aa6.84□□□□□ -1.31
SYNE1-215ENST00000460912 TIMM23O14925 209 aa6.84□□□□□ -1.31
SYNE1-215ENST00000460912 HYPMO75409 117 aa6.84□□□□□ -1.31
SYNE1-215ENST00000460912 APCSP02743 223 aa6.84□□□□□ -1.31
SYNE1-215ENST00000460912 HIST1H1EP10412 219 aaKnown RBP6.84□□□□□ -1.31
SYNE1-215ENST00000460912 PRTN3P24158 256 aa6.84□□□□□ -1.31
SYNE1-215ENST00000460912 SSBP3Q9BWW4 388 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-215ENST00000460912 NPFFR1Q9GZQ6 430 aa6.84□□□□□ -1.31
SYNE1-215ENST00000460912 CEACAM3P40198 252 aa6.83□□□□□ -1.32
SYNE1-215ENST00000460912 TNXAQ16473 311 aa6.83□□□□□ -1.32
SYNE1-215ENST00000460912 OR1B1Q8NGR6 318 aa6.83□□□□□ -1.32
SYNE1-215ENST00000460912 SVIPQ8NHG7 77 aa6.83□□□□□ -1.32
SYNE1-215ENST00000460912 FBXL15Q9H469 300 aa6.83□□□□□ -1.32
SYNE1-215ENST00000460912 SS18L2Q9UHA2 77 aa6.83□□□□□ -1.32
SYNE1-215ENST00000460912 ABCA1O95477 2261 aa6.83□□□□□ -1.32
SYNE1-215ENST00000460912 A0A096LNJ9 63 aa6.83□□□□□ -1.32
SYNE1-215ENST00000460912 ZFP36P26651 326 aaKnown RBP6.83□□□□□ -1.32
SYNE1-215ENST00000460912 SRSF2Q01130 221 aaKnown RBP6.83□□□□□ -1.32
SYNE1-215ENST00000460912 OR1N2Q8NGR9 330 aa6.83□□□□□ -1.32
SYNE1-215ENST00000460912 NGBQ9NPG2 151 aa6.83□□□□□ -1.32
SYNE1-215ENST00000460912 LINC00614P0C842 121 aa6.83□□□□□ -1.32
SYNE1-215ENST00000460912 IGLC3P0DOY3 106 aa6.83□□□□□ -1.32
SYNE1-215ENST00000460912 RBX1P62877 108 aa6.83□□□□□ -1.32
SYNE1-215ENST00000460912 PRB3Q04118 309 aaPredicted RBP6.83□□□□□ -1.32
SYNE1-215ENST00000460912 KIAA1644Q3SXP7 199 aa6.83□□□□□ -1.32
SYNE1-215ENST00000460912 FAM181BA6NEQ2 426 aa6.82□□□□□ -1.32
SYNE1-215ENST00000460912 SLC35B1P78383 322 aa6.82□□□□□ -1.32
SYNE1-215ENST00000460912 OR4B1Q8NGF8 309 aa6.82□□□□□ -1.32
SYNE1-215ENST00000460912 INSIG2Q9Y5U4 225 aa6.82□□□□□ -1.32
SYNE1-215ENST00000460912 PKDREJQ9NTG1 2253 aa6.82□□□□□ -1.32
SYNE1-215ENST00000460912 A0A1B0GV72 72 aa6.82□□□□□ -1.32
SYNE1-215ENST00000460912 PGPA6NDG6 321 aa6.82□□□□□ -1.32
SYNE1-215ENST00000460912 NBR2O15453 112 aa6.82□□□□□ -1.32
SYNE1-215ENST00000460912 SAP30O75446 220 aa6.82□□□□□ -1.32
SYNE1-215ENST00000460912 LIPFP07098 398 aa6.82□□□□□ -1.32
SYNE1-215ENST00000460912 CRIP2P52943 208 aaPredicted RBP6.82□□□□□ -1.32
SYNE1-215ENST00000460912 TCL1AP56279 114 aa6.82□□□□□ -1.32
SYNE1-215ENST00000460912 GAGE1Q13065 139 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms