RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 LYNX1P0DP58 116 aa12.94□□□□□ -0.34
CLCNKA-203ENST00000439316 HINT1P49773 126 aaPredicted RBP12.94□□□□□ -0.34
CLCNKA-203ENST00000439316 LINC00173Q6ZV60 143 aa12.94□□□□□ -0.34
CLCNKA-203ENST00000439316 ORAOV1Q8WV07 137 aa12.94□□□□□ -0.34
CLCNKA-203ENST00000439316 PPP1R14DQ9NXH3 145 aa12.94□□□□□ -0.34
CLCNKA-203ENST00000439316 TOX4O94842 621 aa12.94□□□□□ -0.34
CLCNKA-203ENST00000439316 PLGLAQ15195 96 aa12.94□□□□□ -0.34
CLCNKA-203ENST00000439316 BPIFA4PQ86YQ2 179 aa12.94□□□□□ -0.34
CLCNKA-203ENST00000439316 GATD1Q8NB37 220 aa12.94□□□□□ -0.34
CLCNKA-203ENST00000439316 ZC2HC1AQ96GY0 325 aa12.94□□□□□ -0.34
CLCNKA-203ENST00000439316 ST20Q9HBF5 79 aa12.94□□□□□ -0.34
CLCNKA-203ENST00000439316 RNF24Q9Y225 148 aa12.94□□□□□ -0.34
CLCNKA-203ENST00000439316 AKAP6Q13023 2319 aa12.94□□□□□ -0.34
CLCNKA-203ENST00000439316 C19orf84I3L1E1 186 aa12.93□□□□□ -0.34
CLCNKA-203ENST00000439316 OR5AL1P0C617 328 aa12.93□□□□□ -0.34
CLCNKA-203ENST00000439316 SIGLEC15Q6ZMC9 328 aa12.93□□□□□ -0.34
CLCNKA-203ENST00000439316 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.92□□□□□ -0.34
CLCNKA-203ENST00000439316 HLA-DRB1P01911 266 aa12.92□□□□□ -0.34
CLCNKA-203ENST00000439316 LIPFP07098 398 aa12.92□□□□□ -0.34
CLCNKA-203ENST00000439316 LYPD1Q8N2G4 141 aa12.92□□□□□ -0.34
CLCNKA-203ENST00000439316 A0A1B0GUT8 65 aa12.92□□□□□ -0.34
CLCNKA-203ENST00000439316 TIMM23O14925 209 aa12.92□□□□□ -0.34
CLCNKA-203ENST00000439316 MRPS12O15235 138 aaKnown RBP12.92□□□□□ -0.34
CLCNKA-203ENST00000439316 LDLRAD2Q5SZI1 272 aa12.92□□□□□ -0.34
CLCNKA-203ENST00000439316 C17orf77Q96MU5 243 aa12.92□□□□□ -0.34
CLCNKA-203ENST00000439316 CNIH1O95406 144 aa12.91□□□□□ -0.34
CLCNKA-203ENST00000439316 ZNF491Q8N8L2 437 aa12.91□□□□□ -0.34
CLCNKA-203ENST00000439316 PSG8Q9UQ74 426 aa12.91□□□□□ -0.34
CLCNKA-203ENST00000439316 RIGQ13278 110 aa12.9□□□□□ -0.34
CLCNKA-203ENST00000439316 PSG3Q16557 428 aa12.9□□□□□ -0.34
CLCNKA-203ENST00000439316 UNQ5815/PRO19632Q6UWF5 114 aa12.9□□□□□ -0.34
CLCNKA-203ENST00000439316 ZNF843Q8N446 348 aa12.9□□□□□ -0.34
CLCNKA-203ENST00000439316 RNF125Q96EQ8 232 aa12.9□□□□□ -0.34
CLCNKA-203ENST00000439316 TMEM191AQ9H0A3 160 aa12.9□□□□□ -0.34
CLCNKA-203ENST00000439316 UTP20O75691 2785 aaKnown RBP12.9□□□□□ -0.34
CLCNKA-203ENST00000439316 K7EQM0 130 aa12.9□□□□□ -0.34
CLCNKA-203ENST00000439316 ARMS2P0C7Q2 107 aa12.9□□□□□ -0.34
CLCNKA-203ENST00000439316 HTR1DP28221 377 aa12.9□□□□□ -0.34
CLCNKA-203ENST00000439316 PET117Q6UWS5 81 aa12.9□□□□□ -0.34
CLCNKA-203ENST00000439316 LY6G5BQ8NDX9 201 aa12.9□□□□□ -0.34
CLCNKA-203ENST00000439316 COX11Q9Y6N1 276 aa12.9□□□□□ -0.34
CLCNKA-203ENST00000439316 CHD6Q8TD26 2715 aa12.9□□□□□ -0.34
CLCNKA-203ENST00000439316 LRRK2Q5S007 2527 aa12.9□□□□□ -0.35
CLCNKA-203ENST00000439316 A0A1B0GW15 77 aa12.89□□□□□ -0.35
CLCNKA-203ENST00000439316 WI2-2373I1.2A0A1W2PRP0 233 aa12.89□□□□□ -0.35
CLCNKA-203ENST00000439316 NBR2O15453 112 aa12.89□□□□□ -0.35
CLCNKA-203ENST00000439316 TCF21O43680 179 aa12.89□□□□□ -0.35
CLCNKA-203ENST00000439316 ZNF414Q96IQ9 312 aa12.89□□□□□ -0.35
CLCNKA-203ENST00000439316 ONECUT1Q9UBC0 465 aa12.89□□□□□ -0.35
CLCNKA-203ENST00000439316 A0A1W2PPR1 153 aa12.89□□□□□ -0.35
CLCNKA-203ENST00000439316 hDV102S1A0JD36 115 aa12.89□□□□□ -0.35
CLCNKA-203ENST00000439316 IL4P05112 153 aa12.89□□□□□ -0.35
CLCNKA-203ENST00000439316 ZNF138P52744 262 aa12.89□□□□□ -0.35
CLCNKA-203ENST00000439316 Q6AWC8 147 aa12.89□□□□□ -0.35
CLCNKA-203ENST00000439316 CFHR4Q92496 578 aa12.89□□□□□ -0.35
CLCNKA-203ENST00000439316 TMUB1Q9BVT8 246 aa12.89□□□□□ -0.35
CLCNKA-203ENST00000439316 MAP1LC3CQ9BXW4 147 aa12.89□□□□□ -0.35
CLCNKA-203ENST00000439316 HSPB8Q9UJY1 196 aa12.89□□□□□ -0.35
CLCNKA-203ENST00000439316 NDUFA3O95167 84 aa12.88□□□□□ -0.35
CLCNKA-203ENST00000439316 CRIP1P50238 77 aa12.88□□□□□ -0.35
CLCNKA-203ENST00000439316 NPBQ8NG41 125 aa12.88□□□□□ -0.35
CLCNKA-203ENST00000439316 NEU4Q8WWR8 484 aaPredicted RBP12.88□□□□□ -0.35
CLCNKA-203ENST00000439316 RAB1BQ9H0U4 201 aa12.88□□□□□ -0.35
CLCNKA-203ENST00000439316 FAM208BQ5VWN6 2430 aa12.88□□□□□ -0.35
CLCNKA-203ENST00000439316 UBR5O95071 2799 aaPredicted RBP12.88□□□□□ -0.35
CLCNKA-203ENST00000439316 ABCA1O95477 2261 aa12.87□□□□□ -0.35
CLCNKA-203ENST00000439316 ZNF738Q8NE65 137 aa12.87□□□□□ -0.35
CLCNKA-203ENST00000439316 OR11H6Q8NGC7 330 aa12.87□□□□□ -0.35
CLCNKA-203ENST00000439316 ASCL2Q99929 193 aa12.87□□□□□ -0.35
CLCNKA-203ENST00000439316 TP73-AS1Q9UF72 201 aa12.87□□□□□ -0.35
CLCNKA-203ENST00000439316 PDE6HQ13956 83 aa12.87□□□□□ -0.35
CLCNKA-203ENST00000439316 Q6ZVH6 145 aa12.87□□□□□ -0.35
CLCNKA-203ENST00000439316 DPM3Q9P2X0 92 aa12.87□□□□□ -0.35
CLCNKA-203ENST00000439316 CCL25O15444 150 aa12.86□□□□□ -0.35
CLCNKA-203ENST00000439316 FCGR2BP31994 310 aaPredicted RBP12.86□□□□□ -0.35
CLCNKA-203ENST00000439316 ZNF48Q96MX3 618 aaPredicted RBP12.86□□□□□ -0.35
CLCNKA-203ENST00000439316 SCRT2Q9NQ03 307 aa12.86□□□□□ -0.35
CLCNKA-203ENST00000439316 TACC2O95359 2948 aa12.86□□□□□ -0.35
CLCNKA-203ENST00000439316 TRAV30A0A087WSZ9 112 aa12.85□□□□□ -0.35
CLCNKA-203ENST00000439316 HSBP1L1C9JCN9 74 aa12.85□□□□□ -0.35
CLCNKA-203ENST00000439316 M0R3E3 92 aa12.85□□□□□ -0.35
CLCNKA-203ENST00000439316 CSN3P07498 182 aa12.85□□□□□ -0.35
CLCNKA-203ENST00000439316 RELQ04864 619 aaPredicted RBP12.85□□□□□ -0.35
CLCNKA-203ENST00000439316 LINC01545Q5VT33 79 aa12.85□□□□□ -0.35
CLCNKA-203ENST00000439316 SLC25A34Q6PIV7 304 aa12.85□□□□□ -0.35
CLCNKA-203ENST00000439316 ZNF493Q6ZR52 646 aa12.85□□□□□ -0.35
CLCNKA-203ENST00000439316 AP5S1Q9NUS5 200 aa12.85□□□□□ -0.35
CLCNKA-203ENST00000439316 CRYBG3Q68DQ2 2970 aa12.85□□□□□ -0.35
CLCNKA-203ENST00000439316 IGLV11-55A0A075B6I3 123 aa12.85□□□□□ -0.35
CLCNKA-203ENST00000439316 PTTG1IPP53801 180 aa12.85□□□□□ -0.35
CLCNKA-203ENST00000439316 KLF17Q5JT82 389 aaPredicted RBP12.85□□□□□ -0.35
CLCNKA-203ENST00000439316 S100A7AQ86SG5 101 aa12.85□□□□□ -0.35
CLCNKA-203ENST00000439316 C8orf49Q96NF6 230 aa12.85□□□□□ -0.35
CLCNKA-203ENST00000439316 MS4A6AQ9H2W1 248 aa12.85□□□□□ -0.35
CLCNKA-203ENST00000439316 HILPDAQ9Y5L2 63 aa12.85□□□□□ -0.35
CLCNKA-203ENST00000439316 NPIPB5A8MRT5 1133 aa12.84□□□□□ -0.35
CLCNKA-203ENST00000439316 ODF3BA8MYP8 253 aa12.84□□□□□ -0.35
CLCNKA-203ENST00000439316 GNG7O60262 68 aa12.84□□□□□ -0.35
CLCNKA-203ENST00000439316 UBE2V1Q13404 147 aa12.84□□□□□ -0.35
CLCNKA-203ENST00000439316 C11orf71Q6IPW1 123 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms