RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 PTPRBP23467 1997 aa5.14□□□□□ -1.59
MCF2-205ENST00000437564 TRBV5-4A0A0C4DH59 114 aa5.13□□□□□ -1.59
MCF2-205ENST00000437564 UBE2L5PA0A1B0GUS4 154 aa5.13□□□□□ -1.59
MCF2-205ENST00000437564 LINC01553A4QN01 128 aa5.13□□□□□ -1.59
MCF2-205ENST00000437564 NCBP2LA6PVI3 153 aaKnown RBP5.13□□□□□ -1.59
MCF2-205ENST00000437564 SCRG1O75711 98 aa5.13□□□□□ -1.59
MCF2-205ENST00000437564 BGLAPP02818 100 aa5.13□□□□□ -1.59
MCF2-205ENST00000437564 HOXD3P31249 432 aaPredicted RBP5.13□□□□□ -1.59
MCF2-205ENST00000437564 UBE2D1P51668 147 aa5.13□□□□□ -1.59
MCF2-205ENST00000437564 HERVK_113P61574 105 aa5.13□□□□□ -1.59
MCF2-205ENST00000437564 CENPWQ5EE01 88 aa5.13□□□□□ -1.59
MCF2-205ENST00000437564 WFDC3Q8IUB2 231 aa5.13□□□□□ -1.59
MCF2-205ENST00000437564 TMEM52Q8NDY8 209 aa5.13□□□□□ -1.59
MCF2-205ENST00000437564 WFDC11Q8NEX6 87 aa5.13□□□□□ -1.59
MCF2-205ENST00000437564 NTN5Q8WTR8 489 aaPredicted RBP5.13□□□□□ -1.59
MCF2-205ENST00000437564 FOXC2Q99958 501 aa5.13□□□□□ -1.59
MCF2-205ENST00000437564 HES7Q9BYE0 225 aa5.13□□□□□ -1.59
MCF2-205ENST00000437564 AAMDCQ9H7C9 122 aa5.13□□□□□ -1.59
MCF2-205ENST00000437564 R4GMQ9 66 aa5.13□□□□□ -1.59
MCF2-205ENST00000437564 TMSB15BA0A087X1C1 80 aa5.13□□□□□ -1.59
MCF2-205ENST00000437564 TRBV7-6A0A0J9YX20 115 aa5.13□□□□□ -1.59
MCF2-205ENST00000437564 PIRTP0C851 137 aa5.13□□□□□ -1.59
MCF2-205ENST00000437564 FKBP1AP62942 108 aaKnown RBP5.13□□□□□ -1.59
MCF2-205ENST00000437564 SRSF12Q8WXF0 261 aaKnown RBP5.13□□□□□ -1.59
MCF2-205ENST00000437564 ZNF503Q96F45 646 aa5.13□□□□□ -1.59
MCF2-205ENST00000437564 EMC6Q9BV81 110 aa5.13□□□□□ -1.59
MCF2-205ENST00000437564 NPCDR1Q9BY65 106 aa5.13□□□□□ -1.59
MCF2-205ENST00000437564 DAZ1Q9NQZ3 744 aaKnown RBP5.13□□□□□ -1.59
MCF2-205ENST00000437564 KNCNA6PVL3 124 aa5.12□□□□□ -1.59
MCF2-205ENST00000437564 CCL16O15467 120 aa5.12□□□□□ -1.59
MCF2-205ENST00000437564 SLURP2P0DP57 97 aa5.12□□□□□ -1.59
MCF2-205ENST00000437564 CA6P23280 308 aa5.12□□□□□ -1.59
MCF2-205ENST00000437564 MYCNOSP40205 109 aa5.12□□□□□ -1.59
MCF2-205ENST00000437564 CACNG7P62955 275 aa5.12□□□□□ -1.59
MCF2-205ENST00000437564 CEMP1Q6PRD7 247 aaPredicted RBP5.12□□□□□ -1.59
MCF2-205ENST00000437564 ZNF793Q6ZN11 406 aa5.12□□□□□ -1.59
MCF2-205ENST00000437564 ZFP2Q6ZN57 461 aa5.12□□□□□ -1.59
MCF2-205ENST00000437564 C1orf147Q96MC9 270 aaPredicted RBP5.12□□□□□ -1.59
MCF2-205ENST00000437564 SRXN1Q9BYN0 137 aa5.12□□□□□ -1.59
MCF2-205ENST00000437564 RNF181Q9P0P0 153 aa5.12□□□□□ -1.59
MCF2-205ENST00000437564 X6R8D5 127 aa5.12□□□□□ -1.59
MCF2-205ENST00000437564 SCN3AQ9NY46 2000 aa5.12□□□□□ -1.59
MCF2-205ENST00000437564 COL4A4P53420 1690 aaPredicted RBP5.12□□□□□ -1.59
MCF2-205ENST00000437564 TRBV19A0A075B6N1 114 aa5.11□□□□□ -1.59
MCF2-205ENST00000437564 A0A087WWL8 130 aa5.11□□□□□ -1.59
MCF2-205ENST00000437564 UPK2O00526 184 aa5.11□□□□□ -1.59
MCF2-205ENST00000437564 IGLV3-25P01717 112 aa5.11□□□□□ -1.59
MCF2-205ENST00000437564 TCRAP04437 139 aa5.11□□□□□ -1.59
MCF2-205ENST00000437564 HMGN2P05204 90 aaKnown RBP5.11□□□□□ -1.59
MCF2-205ENST00000437564 PCBD1P61457 104 aa5.11□□□□□ -1.59
MCF2-205ENST00000437564 RPL18AQ02543 176 aaKnown RBP5.11□□□□□ -1.59
MCF2-205ENST00000437564 SRSF9Q13242 221 aaKnown RBP eCLIP5.11□□□□□ -1.59
MCF2-205ENST00000437564 PLPP4Q5VZY2 271 aa5.11□□□□□ -1.59
MCF2-205ENST00000437564 DCAF4L2Q8NA75 395 aa5.11□□□□□ -1.59
MCF2-205ENST00000437564 OR8A1Q8NGG7 326 aa5.11□□□□□ -1.59
MCF2-205ENST00000437564 IGF2BP2-AS1Q96M15 143 aa5.11□□□□□ -1.59
MCF2-205ENST00000437564 AMMECR1Q9Y4X0 333 aaPredicted RBP5.11□□□□□ -1.59
MCF2-205ENST00000437564 PLXNB2O15031 1838 aa5.11□□□□□ -1.59
MCF2-205ENST00000437564 GREB1Q4ZG55 1949 aa5.11□□□□□ -1.59
MCF2-205ENST00000437564 ARID1AO14497 2285 aa5.11□□□□□ -1.59
MCF2-205ENST00000437564 TRBV10-2A0A0K0K1G8 114 aa5.11□□□□□ -1.59
MCF2-205ENST00000437564 LINC01549A6NIU2 74 aa5.11□□□□□ -1.59
MCF2-205ENST00000437564 LINC01548A6NM66 108 aa5.11□□□□□ -1.59
MCF2-205ENST00000437564 H3BS24 57 aa5.11□□□□□ -1.59
MCF2-205ENST00000437564 BUB3O43684 328 aa5.11□□□□□ -1.59
MCF2-205ENST00000437564 DAZ2Q13117 558 aaKnown RBP5.11□□□□□ -1.59
MCF2-205ENST00000437564 FXYD3Q14802 87 aa5.11□□□□□ -1.59
MCF2-205ENST00000437564 ATXN8Q156A1 80 aa5.11□□□□□ -1.59
MCF2-205ENST00000437564 LINC00114Q6XXX2 140 aa5.11□□□□□ -1.59
MCF2-205ENST00000437564 DAZ4Q86SG3 579 aaKnown RBP5.11□□□□□ -1.59
MCF2-205ENST00000437564 Q8NA96 180 aa5.11□□□□□ -1.59
MCF2-205ENST00000437564 CNRIP1Q96F85 164 aaPredicted RBP5.11□□□□□ -1.59
MCF2-205ENST00000437564 CYYR1Q96J86 154 aa5.11□□□□□ -1.59
MCF2-205ENST00000437564 GFRA4Q9GZZ7 299 aa5.11□□□□□ -1.59
MCF2-205ENST00000437564 DAZ3Q9NR90 486 aaKnown RBP5.11□□□□□ -1.59
MCF2-205ENST00000437564 CALYQ9NYX4 217 aa5.11□□□□□ -1.59
MCF2-205ENST00000437564 PTPRSQ13332 1948 aa5.11□□□□□ -1.59
MCF2-205ENST00000437564 MDC1Q14676 2089 aaKnown RBP5.11□□□□□ -1.59
MCF2-205ENST00000437564 PTPRDP23468 1912 aa5.1□□□□□ -1.59
MCF2-205ENST00000437564 H3BP45 60 aa5.1□□□□□ -1.59
MCF2-205ENST00000437564 H3BSH0 61 aa5.1□□□□□ -1.59
MCF2-205ENST00000437564 PEX7O00628 323 aa5.1□□□□□ -1.59
MCF2-205ENST00000437564 EFNA2O43921 213 aa5.1□□□□□ -1.59
MCF2-205ENST00000437564 LOXL3P58215 753 aa5.1□□□□□ -1.59
MCF2-205ENST00000437564 TWIST1Q15672 202 aa5.1□□□□□ -1.59
MCF2-205ENST00000437564 ARTNQ5T4W7 220 aa5.1□□□□□ -1.59
MCF2-205ENST00000437564 SDIM1Q6ZPB5 146 aa5.1□□□□□ -1.59
MCF2-205ENST00000437564 LINC00305Q7Z4B0 112 aa5.1□□□□□ -1.59
MCF2-205ENST00000437564 PRSS3P2Q8NHM4 247 aa5.1□□□□□ -1.59
MCF2-205ENST00000437564 NT5CQ8TCD5 201 aa5.1□□□□□ -1.59
MCF2-205ENST00000437564 PRSS22Q9GZN4 317 aa5.1□□□□□ -1.59
MCF2-205ENST00000437564 PCDH15Q96QU1 1955 aa5.1□□□□□ -1.59
MCF2-205ENST00000437564 HBDP02042 147 aa5.09□□□□□ -1.59
MCF2-205ENST00000437564 ARL14EPLP0DKL9 152 aa5.09□□□□□ -1.59
MCF2-205ENST00000437564 LMO2P25791 158 aa5.09□□□□□ -1.59
MCF2-205ENST00000437564 UBE2E1P51965 193 aa5.09□□□□□ -1.59
MCF2-205ENST00000437564 NCBP2P52298 156 aaKnown RBP eCLIP5.09□□□□□ -1.59
MCF2-205ENST00000437564 FXYD4P59646 89 aa5.09□□□□□ -1.59
MCF2-205ENST00000437564 ERCC8Q13216 396 aa5.09□□□□□ -1.59
MCF2-205ENST00000437564 FAM104BQ5XKR9 115 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms