RNA–Protein interactions for RNA: ENST00000367251.7

SYNE1-205, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,837 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-205ENST00000367251 IL15RAQ13261 267 aa7.34□□□□□ -1.23
SYNE1-205ENST00000367251 PYY3Q5JQD4 70 aa7.34□□□□□ -1.23
SYNE1-205ENST00000367251 MORN3Q6PF18 240 aaPredicted RBP7.34□□□□□ -1.23
SYNE1-205ENST00000367251 TMEM256Q8N2U0 113 aa7.34□□□□□ -1.23
SYNE1-205ENST00000367251 NUP35Q8NFH5 326 aa7.34□□□□□ -1.23
SYNE1-205ENST00000367251 SIGLEC9Q9Y336 463 aa7.34□□□□□ -1.23
SYNE1-205ENST00000367251 U3KQA8 63 aa7.34□□□□□ -1.23
SYNE1-205ENST00000367251 PCNX1Q96RV3 2341 aa7.34□□□□□ -1.24
SYNE1-205ENST00000367251 FREM3P0C091 2139 aa7.33□□□□□ -1.24
SYNE1-205ENST00000367251 Q6ZSR3 168 aa7.33□□□□□ -1.24
SYNE1-205ENST00000367251 DERL1Q9BUN8 251 aa7.33□□□□□ -1.24
SYNE1-205ENST00000367251 COL4A6Q14031 1691 aa7.33□□□□□ -1.24
SYNE1-205ENST00000367251 NDUFA3O95167 84 aa7.33□□□□□ -1.24
SYNE1-205ENST00000367251 C21orf62-AS1Q17RA5 79 aa7.33□□□□□ -1.24
SYNE1-205ENST00000367251 C9orf139Q6ZV77 190 aa7.33□□□□□ -1.24
SYNE1-205ENST00000367251 RNF138Q8WVD3 245 aa7.33□□□□□ -1.24
SYNE1-205ENST00000367251 PFN1P07737 140 aaKnown RBP7.33□□□□□ -1.24
SYNE1-205ENST00000367251 SRSF6Q13247 344 aaKnown RBP7.33□□□□□ -1.24
SYNE1-205ENST00000367251 LAGE3Q14657 143 aa7.33□□□□□ -1.24
SYNE1-205ENST00000367251 TMEM249Q2WGJ8 235 aa7.33□□□□□ -1.24
SYNE1-205ENST00000367251 LYPD6BQ8NI32 183 aa7.33□□□□□ -1.24
SYNE1-205ENST00000367251 PLNP26678 52 aa7.33□□□□□ -1.24
SYNE1-205ENST00000367251 CFHR2P36980 270 aa7.33□□□□□ -1.24
SYNE1-205ENST00000367251 C5orf64Q2M2E5 130 aa7.33□□□□□ -1.24
SYNE1-205ENST00000367251 ST6GALNAC3Q8NDV1 305 aa7.33□□□□□ -1.24
SYNE1-205ENST00000367251 ST6GALNAC6Q969X2 333 aa7.33□□□□□ -1.24
SYNE1-205ENST00000367251 CHTOPQ9Y3Y2 248 aaKnown RBP7.33□□□□□ -1.24
SYNE1-205ENST00000367251 C1orf159Q96HA4 380 aa7.32□□□□□ -1.24
SYNE1-205ENST00000367251 FAM223BA6NKX1 122 aa7.32□□□□□ -1.24
SYNE1-205ENST00000367251 SS18Q15532 418 aa7.32□□□□□ -1.24
SYNE1-205ENST00000367251 ZNF833PQ6ZTB9 187 aa7.32□□□□□ -1.24
SYNE1-205ENST00000367251 FAM223AQ8IWN6 122 aa7.32□□□□□ -1.24
SYNE1-205ENST00000367251 LINC00311Q8N616 119 aa7.32□□□□□ -1.24
SYNE1-205ENST00000367251 LINC00477Q96M19 166 aa7.32□□□□□ -1.24
SYNE1-205ENST00000367251 TICRRQ7Z2Z1 1910 aa7.32□□□□□ -1.24
SYNE1-205ENST00000367251 TMEM75Q8N9X5 138 aa7.32□□□□□ -1.24
SYNE1-205ENST00000367251 A0A0G2JNJ9 132 aa7.32□□□□□ -1.24
SYNE1-205ENST00000367251 PMS2P5A8MQ11 134 aa7.32□□□□□ -1.24
SYNE1-205ENST00000367251 IGFL3Q6UXB1 125 aa7.32□□□□□ -1.24
SYNE1-205ENST00000367251 VMO1Q7Z5L0 202 aa7.32□□□□□ -1.24
SYNE1-205ENST00000367251 SHANK2-AS3Q9BTD1 123 aa7.32□□□□□ -1.24
SYNE1-205ENST00000367251 Q9UFV3 132 aa7.32□□□□□ -1.24
SYNE1-205ENST00000367251 RFNGQ9Y644 331 aa7.32□□□□□ -1.24
SYNE1-205ENST00000367251 C9JQL5 133 aa7.32□□□□□ -1.24
SYNE1-205ENST00000367251 SELLP14151 372 aa7.32□□□□□ -1.24
SYNE1-205ENST00000367251 FAM231DQ6ZW35 169 aa7.32□□□□□ -1.24
SYNE1-205ENST00000367251 SCRT1Q9BWW7 348 aa7.32□□□□□ -1.24
SYNE1-205ENST00000367251 A0A1B0GWB2 263 aa7.31□□□□□ -1.24
SYNE1-205ENST00000367251 APOC4P55056 127 aa7.31□□□□□ -1.24
SYNE1-205ENST00000367251 USMG5Q96IX5 58 aa7.31□□□□□ -1.24
SYNE1-205ENST00000367251 ZNF48Q96MX3 618 aaPredicted RBP7.31□□□□□ -1.24
SYNE1-205ENST00000367251 IGHV3-64A0A075B6Q5 118 aa7.31□□□□□ -1.24
SYNE1-205ENST00000367251 H3BUT2 72 aa7.31□□□□□ -1.24
SYNE1-205ENST00000367251 IGHV4-39P01824 125 aa7.31□□□□□ -1.24
SYNE1-205ENST00000367251 ZNF138P52744 262 aa7.31□□□□□ -1.24
SYNE1-205ENST00000367251 C10orf55Q5SWW7 151 aa7.31□□□□□ -1.24
SYNE1-205ENST00000367251 LCN12Q6JVE5 192 aa7.31□□□□□ -1.24
SYNE1-205ENST00000367251 Q86TA4 180 aa7.31□□□□□ -1.24
SYNE1-205ENST00000367251 C20orf144Q9BQM9 153 aa7.31□□□□□ -1.24
SYNE1-205ENST00000367251 ARHGEF17Q96PE2 2063 aaPredicted RBP7.31□□□□□ -1.24
SYNE1-205ENST00000367251 CA1P00915 261 aaPredicted RBP7.31□□□□□ -1.24
SYNE1-205ENST00000367251 ZNF474Q6S9Z5 364 aaPredicted RBP7.31□□□□□ -1.24
SYNE1-205ENST00000367251 NDUFA4L2Q9NRX3 87 aa7.31□□□□□ -1.24
SYNE1-205ENST00000367251 THADAQ6YHU6 1953 aa7.31□□□□□ -1.24
SYNE1-205ENST00000367251 HELZP42694 1942 aaKnown RBP7.31□□□□□ -1.24
SYNE1-205ENST00000367251 TRAV2A0A0B4J234 112 aa7.31□□□□□ -1.24
SYNE1-205ENST00000367251 VWC2LB2RUY7 222 aa7.31□□□□□ -1.24
SYNE1-205ENST00000367251 RSPO1Q2MKA7 263 aaPredicted RBP7.31□□□□□ -1.24
SYNE1-205ENST00000367251 TNFRSF6BO95407 300 aa7.3□□□□□ -1.24
SYNE1-205ENST00000367251 C3orf79P0CE67 100 aa7.3□□□□□ -1.24
SYNE1-205ENST00000367251 YPEL3P61236 119 aaPredicted RBP7.3□□□□□ -1.24
SYNE1-205ENST00000367251 LIME1Q9H400 295 aa7.3□□□□□ -1.24
SYNE1-205ENST00000367251 CACNA1IQ9P0X4 2223 aa7.3□□□□□ -1.24
SYNE1-205ENST00000367251 SH2D1AO60880 128 aa7.3□□□□□ -1.24
SYNE1-205ENST00000367251 NDUFB8O95169 186 aa7.3□□□□□ -1.24
SYNE1-205ENST00000367251 KRTAP27-1Q3LI81 207 aa7.3□□□□□ -1.24
SYNE1-205ENST00000367251 TEX36Q5VZQ5 186 aa7.3□□□□□ -1.24
SYNE1-205ENST00000367251 LYZL1Q6UWQ5 148 aa7.3□□□□□ -1.24
SYNE1-205ENST00000367251 SNHG12Q9BXW3 62 aa7.3□□□□□ -1.24
SYNE1-205ENST00000367251 SYS1-DBNDD2H3BUS1 97 aa7.3□□□□□ -1.24
SYNE1-205ENST00000367251 IGLV1-44P01699 117 aa7.3□□□□□ -1.24
SYNE1-205ENST00000367251 SPOCK3Q9BQ16 436 aa7.3□□□□□ -1.24
SYNE1-205ENST00000367251 CR1LQ2VPA4 569 aa7.3□□□□□ -1.24
SYNE1-205ENST00000367251 C15orf32Q32M92 178 aa7.3□□□□□ -1.24
SYNE1-205ENST00000367251 ZNF876PQ49A33 203 aa7.3□□□□□ -1.24
SYNE1-205ENST00000367251 ZNF524Q96C55 264 aa7.3□□□□□ -1.24
SYNE1-205ENST00000367251 D6R8Y8 96 aa7.3□□□□□ -1.24
SYNE1-205ENST00000367251 SNAI2O43623 268 aa7.3□□□□□ -1.24
SYNE1-205ENST00000367251 IGHV2-5P01817 119 aa7.3□□□□□ -1.24
SYNE1-205ENST00000367251 PPIFP30405 207 aaKnown RBP7.3□□□□□ -1.24
SYNE1-205ENST00000367251 C4orf48Q5BLP8 95 aa7.3□□□□□ -1.24
SYNE1-205ENST00000367251 HS3ST6Q96QI5 342 aa7.3□□□□□ -1.24
SYNE1-205ENST00000367251 DLEU1O43261 78 aa7.29□□□□□ -1.24
SYNE1-205ENST00000367251 NDUFS5O43920 106 aa7.29□□□□□ -1.24
SYNE1-205ENST00000367251 C5orf24Q7Z6I8 188 aa7.29□□□□□ -1.24
SYNE1-205ENST00000367251 EXOC3-AS1Q8N2X6 119 aa7.29□□□□□ -1.24
SYNE1-205ENST00000367251 C8orf31Q8N9H6 132 aa7.29□□□□□ -1.24
SYNE1-205ENST00000367251 C11orf52Q96A22 123 aa7.29□□□□□ -1.24
SYNE1-205ENST00000367251 TMEM14CQ9P0S9 112 aa7.29□□□□□ -1.24
SYNE1-205ENST00000367251 IGKV1-39P01597 117 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms