RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 PRR13Q9NZ81 148 aa9.53□□□□□ -0.88
VPS29-201ENST00000360579 SNURFLB1AK76 121 aa9.52□□□□□ -0.89
VPS29-201ENST00000360579 H3BRN7 92 aa9.52□□□□□ -0.89
VPS29-201ENST00000360579 MED6O75586 246 aa9.52□□□□□ -0.89
VPS29-201ENST00000360579 CXCL3P19876 107 aa9.52□□□□□ -0.89
VPS29-201ENST00000360579 RAP2BP61225 183 aa9.52□□□□□ -0.89
VPS29-201ENST00000360579 PSG3Q16557 428 aa9.52□□□□□ -0.89
VPS29-201ENST00000360579 SHANK2-AS3Q9BTD1 123 aa9.52□□□□□ -0.89
VPS29-201ENST00000360579 SCP2D1Q9UJQ7 156 aa9.52□□□□□ -0.89
VPS29-201ENST00000360579 A0A087X0K7 114 aa9.51□□□□□ -0.89
VPS29-201ENST00000360579 DUXBA0A1W2PPF3 345 aa9.51□□□□□ -0.89
VPS29-201ENST00000360579 GAGE12BA1L429 117 aa9.51□□□□□ -0.89
VPS29-201ENST00000360579 SIVA1O15304 175 aa9.51□□□□□ -0.89
VPS29-201ENST00000360579 GAGE7O76087 117 aa9.51□□□□□ -0.89
VPS29-201ENST00000360579 GAGE12FP0CL80 117 aa9.51□□□□□ -0.89
VPS29-201ENST00000360579 GAGE12GP0CL81 117 aa9.51□□□□□ -0.89
VPS29-201ENST00000360579 GAGE12IP0CL82 117 aa9.51□□□□□ -0.89
VPS29-201ENST00000360579 IAPPP10997 89 aa9.51□□□□□ -0.89
VPS29-201ENST00000360579 GATA2P23769 480 aaPredicted RBP9.51□□□□□ -0.89
VPS29-201ENST00000360579 AKR1C1Q04828 323 aa9.51□□□□□ -0.89
VPS29-201ENST00000360579 NFE4Q86UQ8 179 aa9.51□□□□□ -0.89
VPS29-201ENST00000360579 CLVS1Q8IUQ0 354 aaPredicted RBP9.51□□□□□ -0.89
VPS29-201ENST00000360579 OR51S1Q8NGJ8 323 aa9.51□□□□□ -0.89
VPS29-201ENST00000360579 SMIM4Q8WVI0 70 aa9.51□□□□□ -0.89
VPS29-201ENST00000360579 C18orf15Q96N68 181 aa9.51□□□□□ -0.89
VPS29-201ENST00000360579 RNF24Q9Y225 148 aa9.51□□□□□ -0.89
VPS29-201ENST00000360579 HIGD1AQ9Y241 93 aa9.51□□□□□ -0.89
VPS29-201ENST00000360579 FAM229AH3BQW9 127 aa9.5□□□□□ -0.89
VPS29-201ENST00000360579 PITX3O75364 302 aa9.5□□□□□ -0.89
VPS29-201ENST00000360579 SLC25A6P12236 298 aa9.5□□□□□ -0.89
VPS29-201ENST00000360579 ICAM4Q14773 271 aa9.5□□□□□ -0.89
VPS29-201ENST00000360579 TMEM182Q6ZP80 229 aaPredicted RBP9.5□□□□□ -0.89
VPS29-201ENST00000360579 RPUSD4Q96CM3 377 aaKnown RBP9.5□□□□□ -0.89
VPS29-201ENST00000360579 FLG2Q5D862 2391 aaPredicted RBP9.49□□□□□ -0.89
VPS29-201ENST00000360579 PRSS46E5RG02 174 aa9.49□□□□□ -0.89
VPS29-201ENST00000360579 HYPMO75409 117 aa9.49□□□□□ -0.89
VPS29-201ENST00000360579 IL5P05113 134 aa9.49□□□□□ -0.89
VPS29-201ENST00000360579 RABL2AQ9UBK7 228 aaPredicted RBP9.49□□□□□ -0.89
VPS29-201ENST00000360579 RABL2BQ9UNT1 228 aa9.49□□□□□ -0.89
VPS29-201ENST00000360579 A0A096LPF7 62 aa9.48□□□□□ -0.89
VPS29-201ENST00000360579 CXCL2P19875 107 aa9.48□□□□□ -0.89
VPS29-201ENST00000360579 FUSP35637 526 aaKnown RBP eCLIP9.48□□□□□ -0.89
VPS29-201ENST00000360579 DAZ2Q13117 558 aaKnown RBP9.48□□□□□ -0.89
VPS29-201ENST00000360579 CYP2G1PQ6ZSU1 146 aa9.48□□□□□ -0.89
VPS29-201ENST00000360579 TMPRSS5Q9H3S3 457 aa9.48□□□□□ -0.89
VPS29-201ENST00000360579 CTDSPLO15194 276 aa9.47□□□□□ -0.89
VPS29-201ENST00000360579 RGS5O15539 181 aa9.47□□□□□ -0.89
VPS29-201ENST00000360579 SYNGR2O43760 224 aa9.47□□□□□ -0.89
VPS29-201ENST00000360579 OR5G3P0C626 314 aa9.47□□□□□ -0.89
VPS29-201ENST00000360579 PLP1P60201 277 aa9.47□□□□□ -0.89
VPS29-201ENST00000360579 KRTAP10-1P60331 282 aa9.47□□□□□ -0.89
VPS29-201ENST00000360579 SELENOTP62341 195 aa9.47□□□□□ -0.89
VPS29-201ENST00000360579 GFI1BQ5VTD9 330 aa9.47□□□□□ -0.89
VPS29-201ENST00000360579 LCN15Q6UWW0 184 aa9.47□□□□□ -0.89
VPS29-201ENST00000360579 Q6ZSN1 163 aa9.47□□□□□ -0.89
VPS29-201ENST00000360579 ACOT7LQ6ZUV0 252 aa9.47□□□□□ -0.89
VPS29-201ENST00000360579 VSIG2Q96IQ7 327 aa9.47□□□□□ -0.89
VPS29-201ENST00000360579 SLC50A1Q9BRV3 221 aa9.47□□□□□ -0.89
VPS29-201ENST00000360579 TRGV2A0A075B6R0 118 aa9.46□□□□□ -0.9
VPS29-201ENST00000360579 TRAV9-2A0A087WT02 112 aa9.46□□□□□ -0.9
VPS29-201ENST00000360579 A0A087WTM6 91 aa9.46□□□□□ -0.9
VPS29-201ENST00000360579 ANKRD20A5PA0PJZ0 165 aa9.46□□□□□ -0.9
VPS29-201ENST00000360579 SMCO3A2RU48 225 aa9.46□□□□□ -0.9
VPS29-201ENST00000360579 WRBO00258 174 aa9.46□□□□□ -0.9
VPS29-201ENST00000360579 NXPH4O95158 308 aa9.46□□□□□ -0.9
VPS29-201ENST00000360579 LINC00869P0C866 280 aa9.46□□□□□ -0.9
VPS29-201ENST00000360579 ANXA7P20073 488 aaKnown RBP9.46□□□□□ -0.9
VPS29-201ENST00000360579 SPANXN5Q5MJ07 72 aa9.46□□□□□ -0.9
VPS29-201ENST00000360579 TMED4Q7Z7H5 227 aa9.46□□□□□ -0.9
VPS29-201ENST00000360579 CCDC190Q86UF4 302 aa9.46□□□□□ -0.9
VPS29-201ENST00000360579 PYGO2Q9BRQ0 406 aa9.46□□□□□ -0.9
VPS29-201ENST00000360579 MIXL1Q9H2W2 232 aa9.46□□□□□ -0.9
VPS29-201ENST00000360579 MCUBQ9NWR8 336 aa9.46□□□□□ -0.9
VPS29-201ENST00000360579 STRAPQ9Y3F4 350 aaKnown RBP9.46□□□□□ -0.9
VPS29-201ENST00000360579 K7EP13 123 aa9.45□□□□□ -0.9
VPS29-201ENST00000360579 SMR3BP02814 79 aaPredicted RBP9.45□□□□□ -0.9
VPS29-201ENST00000360579 GCSHP23434 173 aa9.45□□□□□ -0.9
VPS29-201ENST00000360579 IL18Q14116 193 aa9.45□□□□□ -0.9
VPS29-201ENST00000360579 KIR3DS1Q14943 382 aa9.45□□□□□ -0.9
VPS29-201ENST00000360579 CTF1Q16619 201 aa9.45□□□□□ -0.9
VPS29-201ENST00000360579 Q6ZTI0 123 aa9.45□□□□□ -0.9
VPS29-201ENST00000360579 LRTM2Q8N967 370 aa9.45□□□□□ -0.9
VPS29-201ENST00000360579 ZNF680Q8NEM1 530 aa9.45□□□□□ -0.9
VPS29-201ENST00000360579 ZNF331Q9NQX6 463 aaPredicted RBP9.45□□□□□ -0.9
VPS29-201ENST00000360579 MDFICQ9P1T7 246 aa9.45□□□□□ -0.9
VPS29-201ENST00000360579 ICOSQ9Y6W8 199 aa9.45□□□□□ -0.9
VPS29-201ENST00000360579 PMS2P5A8MQ11 134 aa9.44□□□□□ -0.9
VPS29-201ENST00000360579 LEPP41159 167 aa9.44□□□□□ -0.9
VPS29-201ENST00000360579 TMEM128Q5BJH2 165 aa9.44□□□□□ -0.9
VPS29-201ENST00000360579 XP32Q5T750 250 aa9.44□□□□□ -0.9
VPS29-201ENST00000360579 ODF3Q96PU9 254 aa9.44□□□□□ -0.9
VPS29-201ENST00000360579 H3BP45 60 aa9.43□□□□□ -0.9
VPS29-201ENST00000360579 MRPS12O15235 138 aaKnown RBP9.43□□□□□ -0.9
VPS29-201ENST00000360579 DNAH10OSP0CZ25 163 aa9.43□□□□□ -0.9
VPS29-201ENST00000360579 C4orf46Q504U0 113 aa9.43□□□□□ -0.9
VPS29-201ENST00000360579 PXDC1Q5TGL8 231 aa9.43□□□□□ -0.9
VPS29-201ENST00000360579 PARD6GQ9BYG4 376 aaPredicted RBP9.43□□□□□ -0.9
VPS29-201ENST00000360579 ARL6Q9H0F7 186 aa9.43□□□□□ -0.9
VPS29-201ENST00000360579 ARV1Q9H2C2 271 aa9.43□□□□□ -0.9
VPS29-201ENST00000360579 TRAV12-3A0A0B4J271 114 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms