RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 TRAV41A0A0B4J266 112 aa10.4□□□□□ -0.74
COL3A1-201ENST00000304636 A0A1W2PPI3 338 aa10.4□□□□□ -0.74
COL3A1-201ENST00000304636 RSPO1Q2MKA7 263 aaPredicted RBP10.4□□□□□ -0.74
COL3A1-201ENST00000304636 GHRHP01286 108 aa10.4□□□□□ -0.74
COL3A1-201ENST00000304636 MINOS1Q5TGZ0 78 aa10.4□□□□□ -0.74
COL3A1-201ENST00000304636 MINOS1-NBL1R4GNA1 71 aa10.4□□□□□ -0.74
COL3A1-201ENST00000304636 TRAV40A0A0B4J280 105 aa10.4□□□□□ -0.74
COL3A1-201ENST00000304636 KIR2DL5BA0A0G2JN68 375 aa10.4□□□□□ -0.74
COL3A1-201ENST00000304636 KIR2DL5BA0A0G2JPC4 375 aa10.4□□□□□ -0.74
COL3A1-201ENST00000304636 C2orf82Q6UX34 121 aa10.4□□□□□ -0.74
COL3A1-201ENST00000304636 KIR2DL5AQ8N109 375 aa10.4□□□□□ -0.74
COL3A1-201ENST00000304636 CSTL1Q9H114 145 aa10.4□□□□□ -0.74
COL3A1-201ENST00000304636 NCOR1P1Q9H4R4 102 aa10.4□□□□□ -0.74
COL3A1-201ENST00000304636 NLRC5Q86WI3 1866 aa10.4□□□□□ -0.74
COL3A1-201ENST00000304636 K7EP34 96 aa10.4□□□□□ -0.75
COL3A1-201ENST00000304636 CFHR2P36980 270 aa10.4□□□□□ -0.75
COL3A1-201ENST00000304636 K7EP13 123 aa10.39□□□□□ -0.75
COL3A1-201ENST00000304636 ZNF672Q499Z4 452 aaPredicted RBP10.39□□□□□ -0.75
COL3A1-201ENST00000304636 TMEM105Q8N8V8 129 aa10.39□□□□□ -0.75
COL3A1-201ENST00000304636 MED12Q93074 2177 aa10.39□□□□□ -0.75
COL3A1-201ENST00000304636 TRBV7-1A0A0A6YYK4 115 aa10.39□□□□□ -0.75
COL3A1-201ENST00000304636 LGALS9BQ3B8N2 356 aa10.39□□□□□ -0.75
COL3A1-201ENST00000304636 LGALS9CQ6DKI2 356 aa10.39□□□□□ -0.75
COL3A1-201ENST00000304636 CFAP161Q6P656 301 aa10.39□□□□□ -0.75
COL3A1-201ENST00000304636 TCF20Q9UGU0 1960 aaKnown RBP10.39□□□□□ -0.75
COL3A1-201ENST00000304636 PYGO2Q9BRQ0 406 aa10.39□□□□□ -0.75
COL3A1-201ENST00000304636 TRGV2A0A075B6R0 118 aa10.39□□□□□ -0.75
COL3A1-201ENST00000304636 RTTNQ86VV8 2226 aa10.38□□□□□ -0.75
COL3A1-201ENST00000304636 TMEM213A2RRL7 107 aa10.38□□□□□ -0.75
COL3A1-201ENST00000304636 SPACA3Q8IXA5 215 aa10.38□□□□□ -0.75
COL3A1-201ENST00000304636 C14orf178Q8N769 122 aaPredicted RBP10.38□□□□□ -0.75
COL3A1-201ENST00000304636 PHF3Q92576 2039 aaKnown RBP10.38□□□□□ -0.75
COL3A1-201ENST00000304636 F8W1H4 67 aa10.38□□□□□ -0.75
COL3A1-201ENST00000304636 IGHG3P01860 377 aa10.38□□□□□ -0.75
COL3A1-201ENST00000304636 PLXNA2O75051 1894 aa10.38□□□□□ -0.75
COL3A1-201ENST00000304636 MBD3L4A6NDZ8 208 aaPredicted RBP10.38□□□□□ -0.75
COL3A1-201ENST00000304636 MBD3L3A6NE82 208 aaPredicted RBP10.38□□□□□ -0.75
COL3A1-201ENST00000304636 MBD3L5A6NJ08 208 aaPredicted RBP10.38□□□□□ -0.75
COL3A1-201ENST00000304636 MAJINQ3KP22 176 aa10.38□□□□□ -0.75
COL3A1-201ENST00000304636 MBD3L2Q8NHZ7 208 aaPredicted RBP10.38□□□□□ -0.75
COL3A1-201ENST00000304636 ZNF876PQ49A33 203 aa10.37□□□□□ -0.75
COL3A1-201ENST00000304636 BVES-AS1Q5T3Y7 98 aa10.37□□□□□ -0.75
COL3A1-201ENST00000304636 VMO1Q7Z5L0 202 aa10.37□□□□□ -0.75
COL3A1-201ENST00000304636 RNF166Q96A37 237 aaPredicted RBP10.37□□□□□ -0.75
COL3A1-201ENST00000304636 M0R1W7 72 aa10.37□□□□□ -0.75
COL3A1-201ENST00000304636 Q8N8P6 123 aa10.37□□□□□ -0.75
COL3A1-201ENST00000304636 RCHY1Q96PM5 261 aa10.37□□□□□ -0.75
COL3A1-201ENST00000304636 SPANXA1Q9NS26 97 aa10.37□□□□□ -0.75
COL3A1-201ENST00000304636 IGFL4Q6B9Z1 124 aa10.37□□□□□ -0.75
COL3A1-201ENST00000304636 APC2O95996 2303 aa10.37□□□□□ -0.75
COL3A1-201ENST00000304636 MGAMO43451 1857 aa10.37□□□□□ -0.75
COL3A1-201ENST00000304636 TRBV19A0A075B6N1 114 aa10.37□□□□□ -0.75
COL3A1-201ENST00000304636 ZNF474Q6S9Z5 364 aaPredicted RBP10.37□□□□□ -0.75
COL3A1-201ENST00000304636 SRRM4A7MD48 611 aaKnown RBP10.36□□□□□ -0.75
COL3A1-201ENST00000304636 FNDC1Q4ZHG4 1894 aaPredicted RBP10.36□□□□□ -0.75
COL3A1-201ENST00000304636 CD59P13987 128 aa10.36□□□□□ -0.75
COL3A1-201ENST00000304636 ZNF833PQ6ZTB9 187 aa10.36□□□□□ -0.75
COL3A1-201ENST00000304636 WDR86Q86TI4 376 aa10.36□□□□□ -0.75
COL3A1-201ENST00000304636 K7EN84 100 aa10.36□□□□□ -0.75
COL3A1-201ENST00000304636 PROK2Q9HC23 129 aa10.36□□□□□ -0.75
COL3A1-201ENST00000304636 TRBV20-1A0A075B6N2 111 aa10.35□□□□□ -0.75
COL3A1-201ENST00000304636 KLRD1Q13241 179 aa10.35□□□□□ -0.75
COL3A1-201ENST00000304636 VWC2Q2TAL6 325 aa10.35□□□□□ -0.75
COL3A1-201ENST00000304636 SLC25A20O43772 301 aa10.35□□□□□ -0.75
COL3A1-201ENST00000304636 STHQ8IWL8 128 aa10.35□□□□□ -0.75
COL3A1-201ENST00000304636 Q8NFD4 153 aa10.35□□□□□ -0.75
COL3A1-201ENST00000304636 WIPF2Q8TF74 440 aaPredicted RBP10.35□□□□□ -0.75
COL3A1-201ENST00000304636 WFDC12Q8WWY7 111 aa10.35□□□□□ -0.75
COL3A1-201ENST00000304636 TMEM14CQ9P0S9 112 aa10.35□□□□□ -0.75
COL3A1-201ENST00000304636 THSD7BQ9C0I4 1608 aa10.35□□□□□ -0.75
COL3A1-201ENST00000304636 FANCMQ8IYD8 2048 aa10.35□□□□□ -0.75
COL3A1-201ENST00000304636 A0A0U1RRA0 63 aa10.35□□□□□ -0.75
COL3A1-201ENST00000304636 A0A1W2PPM0 123 aa10.35□□□□□ -0.75
COL3A1-201ENST00000304636 C9JAW5 83 aa10.35□□□□□ -0.75
COL3A1-201ENST00000304636 SIVA1O15304 175 aa10.35□□□□□ -0.75
COL3A1-201ENST00000304636 C8orf49Q96NF6 230 aa10.35□□□□□ -0.75
COL3A1-201ENST00000304636 TSSC4Q9Y5U2 329 aaPredicted RBP10.35□□□□□ -0.75
COL3A1-201ENST00000304636 SRD5A1P18405 259 aa10.35□□□□□ -0.75
COL3A1-201ENST00000304636 MRPL51Q4U2R6 128 aaKnown RBP10.35□□□□□ -0.75
COL3A1-201ENST00000304636 CITED2Q99967 270 aaPredicted RBP10.35□□□□□ -0.75
COL3A1-201ENST00000304636 ADARB2-AS1A8MUL3 147 aa10.35□□□□□ -0.75
COL3A1-201ENST00000304636 PRR20EP86478 221 aa10.35□□□□□ -0.75
COL3A1-201ENST00000304636 PRR20CP86479 221 aa10.35□□□□□ -0.75
COL3A1-201ENST00000304636 PRR20DP86480 221 aa10.35□□□□□ -0.75
COL3A1-201ENST00000304636 PRR20BP86481 221 aa10.35□□□□□ -0.75
COL3A1-201ENST00000304636 PRR20AP86496 221 aa10.35□□□□□ -0.75
COL3A1-201ENST00000304636 ERCC8Q13216 396 aa10.35□□□□□ -0.75
COL3A1-201ENST00000304636 KLF5Q13887 457 aaPredicted RBP10.35□□□□□ -0.75
COL3A1-201ENST00000304636 IGLC7A0M8Q6 106 aa10.34□□□□□ -0.75
COL3A1-201ENST00000304636 C15orf65H3BRN8 121 aa10.34□□□□□ -0.75
COL3A1-201ENST00000304636 NPC2P61916 151 aa10.34□□□□□ -0.75
COL3A1-201ENST00000304636 LYPD2Q6UXB3 125 aa10.34□□□□□ -0.75
COL3A1-201ENST00000304636 PRSS22Q9GZN4 317 aa10.34□□□□□ -0.75
COL3A1-201ENST00000304636 PLA2G2EQ9NZK7 142 aa10.34□□□□□ -0.75
COL3A1-201ENST00000304636 LGALS1P09382 135 aaKnown RBP10.34□□□□□ -0.75
COL3A1-201ENST00000304636 TMEM86BQ8N661 226 aa10.34□□□□□ -0.75
COL3A1-201ENST00000304636 C17orf58Q2M2W7 97 aa10.34□□□□□ -0.75
COL3A1-201ENST00000304636 LINC00527Q9UJ94 153 aa10.34□□□□□ -0.75
COL3A1-201ENST00000304636 GATA4P43694 442 aa10.34□□□□□ -0.75
COL3A1-201ENST00000304636 NDPQ00604 133 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms