RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 GGNQ86UU5 652 aa5.25□□□□□ -1.57
VPS35-201ENST00000299138 SMIM27A0A1W2PRY6 76 aa5.25□□□□□ -1.57
VPS35-201ENST00000299138 PMS2P5A8MQ11 134 aa5.25□□□□□ -1.57
VPS35-201ENST00000299138 K7EP34 96 aa5.25□□□□□ -1.57
VPS35-201ENST00000299138 RHOGP84095 191 aa5.25□□□□□ -1.57
VPS35-201ENST00000299138 PLEKHB2Q96CS7 222 aa5.25□□□□□ -1.57
VPS35-201ENST00000299138 CHCHD5Q9BSY4 110 aa5.25□□□□□ -1.57
VPS35-201ENST00000299138 IFI27L2Q9H2X8 130 aa5.25□□□□□ -1.57
VPS35-201ENST00000299138 IGKV1-39P01597 117 aa5.25□□□□□ -1.57
VPS35-201ENST00000299138 IGKV1D-39P04432 117 aa5.25□□□□□ -1.57
VPS35-201ENST00000299138 CTSBP07858 339 aa5.25□□□□□ -1.57
VPS35-201ENST00000299138 MPV17P39210 176 aa5.25□□□□□ -1.57
VPS35-201ENST00000299138 SPXQ9BT56 116 aa5.25□□□□□ -1.57
VPS35-201ENST00000299138 FAM106CPP0CH98 169 aa5.25□□□□□ -1.57
VPS35-201ENST00000299138 FGF6P10767 208 aa5.25□□□□□ -1.57
VPS35-201ENST00000299138 GATA2P23769 480 aaPredicted RBP5.25□□□□□ -1.57
VPS35-201ENST00000299138 CEACAM8P31997 349 aaPredicted RBP5.25□□□□□ -1.57
VPS35-201ENST00000299138 SRXN1Q9BYN0 137 aa5.25□□□□□ -1.57
VPS35-201ENST00000299138 CALYQ9NYX4 217 aa5.25□□□□□ -1.57
VPS35-201ENST00000299138 MYO9BQ13459 2157 aa5.25□□□□□ -1.57
VPS35-201ENST00000299138 EFNB3Q15768 340 aa5.25□□□□□ -1.57
VPS35-201ENST00000299138 Q6ZRM9 215 aa5.25□□□□□ -1.57
VPS35-201ENST00000299138 CIARTQ8N365 385 aaPredicted RBP5.25□□□□□ -1.57
VPS35-201ENST00000299138 MDS2Q8NDY4 140 aa5.25□□□□□ -1.57
VPS35-201ENST00000299138 WFDC11Q8NEX6 87 aa5.25□□□□□ -1.57
VPS35-201ENST00000299138 CCL13Q99616 98 aa5.25□□□□□ -1.57
VPS35-201ENST00000299138 MLST8Q9BVC4 326 aa5.25□□□□□ -1.57
VPS35-201ENST00000299138 TIMM23O14925 209 aa5.24□□□□□ -1.57
VPS35-201ENST00000299138 ZNF474Q6S9Z5 364 aaPredicted RBP5.24□□□□□ -1.57
VPS35-201ENST00000299138 C16orf47Q6ZP98 133 aaPredicted RBP5.24□□□□□ -1.57
VPS35-201ENST00000299138 V9GYV3 84 aa5.24□□□□□ -1.57
VPS35-201ENST00000299138 TFF1P04155 84 aa5.24□□□□□ -1.57
VPS35-201ENST00000299138 CCDC144NLQ6NUI1 221 aa5.24□□□□□ -1.57
VPS35-201ENST00000299138 Q6ZWC4 215 aa5.24□□□□□ -1.57
VPS35-201ENST00000299138 CARD19Q96LW7 228 aa5.24□□□□□ -1.57
VPS35-201ENST00000299138 SYS1-DBNDD2H3BUS1 97 aa5.24□□□□□ -1.57
VPS35-201ENST00000299138 WISP2O76076 250 aa5.24□□□□□ -1.57
VPS35-201ENST00000299138 ZNF138P52744 262 aa5.24□□□□□ -1.57
VPS35-201ENST00000299138 CR1LQ2VPA4 569 aa5.24□□□□□ -1.57
VPS35-201ENST00000299138 ACP7Q6ZNF0 438 aa5.24□□□□□ -1.57
VPS35-201ENST00000299138 ODF3L1Q8IXM7 274 aa5.24□□□□□ -1.57
VPS35-201ENST00000299138 VSIRQ9H7M9 311 aa5.24□□□□□ -1.57
VPS35-201ENST00000299138 K7ERJ3 54 aa5.24□□□□□ -1.57
VPS35-201ENST00000299138 CDKN1AP38936 164 aa5.24□□□□□ -1.57
VPS35-201ENST00000299138 CTRLP40313 264 aa5.24□□□□□ -1.57
VPS35-201ENST00000299138 DNAJC13O75165 2243 aa5.24□□□□□ -1.57
VPS35-201ENST00000299138 TCF20Q9UGU0 1960 aaKnown RBP5.24□□□□□ -1.57
VPS35-201ENST00000299138 IGKV3D-7A0A0C4DH55 119 aa5.24□□□□□ -1.57
VPS35-201ENST00000299138 FAM236AA0A1B0GUQ0 79 aa5.24□□□□□ -1.57
VPS35-201ENST00000299138 FAM236BA0A1B0GV22 79 aa5.24□□□□□ -1.57
VPS35-201ENST00000299138 KLRD1Q13241 179 aa5.24□□□□□ -1.57
VPS35-201ENST00000299138 TAL2Q16559 108 aa5.24□□□□□ -1.57
VPS35-201ENST00000299138 C6orf226Q5I0X4 101 aa5.24□□□□□ -1.57
VPS35-201ENST00000299138 C1orf195Q5TG92 126 aa5.24□□□□□ -1.57
VPS35-201ENST00000299138 DEFB125Q8N687 156 aa5.24□□□□□ -1.57
VPS35-201ENST00000299138 SAP25Q8TEE9 199 aa5.24□□□□□ -1.57
VPS35-201ENST00000299138 CRLF1O75462 422 aa5.24□□□□□ -1.57
VPS35-201ENST00000299138 SEC61GP60059 68 aa5.24□□□□□ -1.57
VPS35-201ENST00000299138 ZNF524Q96C55 264 aa5.24□□□□□ -1.57
VPS35-201ENST00000299138 SLC25A45Q8N413 288 aa5.23□□□□□ -1.57
VPS35-201ENST00000299138 ZFAND3Q9H8U3 227 aa5.23□□□□□ -1.57
VPS35-201ENST00000299138 A0A1W2PPM0 123 aa5.23□□□□□ -1.57
VPS35-201ENST00000299138 SRRM5B3KS81 715 aa5.23□□□□□ -1.57
VPS35-201ENST00000299138 ZC2HC1BQ5TFG8 222 aa5.23□□□□□ -1.57
VPS35-201ENST00000299138 CDCP2Q5VXM1 449 aa5.23□□□□□ -1.57
VPS35-201ENST00000299138 AMTNQ6UX39 209 aa5.23□□□□□ -1.57
VPS35-201ENST00000299138 DEPPQ9NTK1 212 aa5.23□□□□□ -1.57
VPS35-201ENST00000299138 TRGV4A0A0C4DH28 118 aa5.23□□□□□ -1.57
VPS35-201ENST00000299138 A0A0G2JRQ6 117 aa5.23□□□□□ -1.57
VPS35-201ENST00000299138 IGKV1D-33P01593 117 aa5.23□□□□□ -1.57
VPS35-201ENST00000299138 IGKV1-33P01594 117 aa5.23□□□□□ -1.57
VPS35-201ENST00000299138 C1orf210Q8IVY1 113 aa5.23□□□□□ -1.57
VPS35-201ENST00000299138 RASL10AQ92737 203 aa5.23□□□□□ -1.57
VPS35-201ENST00000299138 NTN3O00634 580 aaPredicted RBP5.23□□□□□ -1.57
VPS35-201ENST00000299138 SPATA31B1PQ5VZV4 182 aa5.23□□□□□ -1.57
VPS35-201ENST00000299138 PPP1R32Q7Z5V6 425 aa5.23□□□□□ -1.57
VPS35-201ENST00000299138 PRIMA1Q86XR5 153 aa5.23□□□□□ -1.57
VPS35-201ENST00000299138 TRAV40A0A0B4J280 105 aa5.23□□□□□ -1.57
VPS35-201ENST00000299138 FOXH1O75593 365 aa5.23□□□□□ -1.57
VPS35-201ENST00000299138 FOXG1P55316 489 aaPredicted RBP5.23□□□□□ -1.57
VPS35-201ENST00000299138 NDPQ00604 133 aa5.23□□□□□ -1.57
VPS35-201ENST00000299138 PRR4Q16378 134 aa5.23□□□□□ -1.57
VPS35-201ENST00000299138 Q6ZT83 130 aa5.23□□□□□ -1.57
VPS35-201ENST00000299138 C18orf32Q8TCD1 76 aa5.23□□□□□ -1.57
VPS35-201ENST00000299138 NTN5Q8WTR8 489 aaPredicted RBP5.23□□□□□ -1.57
VPS35-201ENST00000299138 IGLC7A0M8Q6 106 aa5.22□□□□□ -1.57
VPS35-201ENST00000299138 SRRM4A7MD48 611 aaKnown RBP5.22□□□□□ -1.57
VPS35-201ENST00000299138 FABP5P3A8MUU1 101 aa5.22□□□□□ -1.57
VPS35-201ENST00000299138 HLA-DRB4P13762 266 aa5.22□□□□□ -1.57
VPS35-201ENST00000299138 FAM104BQ5XKR9 115 aa5.22□□□□□ -1.57
VPS35-201ENST00000299138 C5orf24Q7Z6I8 188 aa5.22□□□□□ -1.57
VPS35-201ENST00000299138 SLC50A1Q9BRV3 221 aa5.22□□□□□ -1.57
VPS35-201ENST00000299138 IDI2-AS1Q9NZ38 188 aa5.22□□□□□ -1.57
VPS35-201ENST00000299138 HLA-DRB4X5D2U9 266 aa5.22□□□□□ -1.57
VPS35-201ENST00000299138 IGHV4-28A0A0C4DH34 117 aa5.22□□□□□ -1.57
VPS35-201ENST00000299138 TMEM167AQ8TBQ9 72 aa5.22□□□□□ -1.57
VPS35-201ENST00000299138 PIFOQ8TCI5 191 aa5.22□□□□□ -1.57
VPS35-201ENST00000299138 TIMM21Q9BVV7 248 aa5.22□□□□□ -1.57
VPS35-201ENST00000299138 OTORQ9NRC9 128 aa5.22□□□□□ -1.57
VPS35-201ENST00000299138 MYMXA0A1B0GTQ4 84 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms