RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 RPRMLQ8N4K4 120 aa10.73□□□□□ -0.69
SKA3-201ENST00000298260 OR4X2Q8NGF9 303 aa10.73□□□□□ -0.69
SKA3-201ENST00000298260 OR9G4Q8NGQ1 327 aa10.73□□□□□ -0.69
SKA3-201ENST00000298260 C20orf78Q9BR46 151 aa10.73□□□□□ -0.69
SKA3-201ENST00000298260 SOX21Q9Y651 276 aaPredicted RBP10.73□□□□□ -0.69
SKA3-201ENST00000298260 ANKRD11Q6UB99 2663 aaPredicted RBP10.72□□□□□ -0.69
SKA3-201ENST00000298260 IGHV3-72A0A0B4J1Y9 119 aa10.72□□□□□ -0.69
SKA3-201ENST00000298260 GP9P14770 177 aa10.72□□□□□ -0.69
SKA3-201ENST00000298260 GATA3P23771 443 aa10.72□□□□□ -0.69
SKA3-201ENST00000298260 CRIP1P50238 77 aa10.72□□□□□ -0.69
SKA3-201ENST00000298260 CT83Q5H943 113 aa10.72□□□□□ -0.69
SKA3-201ENST00000298260 SFTA2Q6UW10 78 aa10.72□□□□□ -0.69
SKA3-201ENST00000298260 GTSCR1Q86UQ5 136 aa10.72□□□□□ -0.69
SKA3-201ENST00000298260 IFI27L1Q96BM0 104 aa10.72□□□□□ -0.69
SKA3-201ENST00000298260 ZNF492Q9P255 531 aa10.72□□□□□ -0.69
SKA3-201ENST00000298260 SVEP1Q4LDE5 3571 aa10.72□□□□□ -0.69
SKA3-201ENST00000298260 TMEM238LA0A1B0GVL6 79 aa10.72□□□□□ -0.69
SKA3-201ENST00000298260 K7EQM0 130 aa10.72□□□□□ -0.69
SKA3-201ENST00000298260 CACNG8Q8WXS5 425 aa10.72□□□□□ -0.69
SKA3-201ENST00000298260 PRELID3AQ96N28 172 aa10.72□□□□□ -0.69
SKA3-201ENST00000298260 GFRA4Q9GZZ7 299 aa10.72□□□□□ -0.69
SKA3-201ENST00000298260 RPUSD1Q9UJJ7 312 aaKnown RBP10.72□□□□□ -0.69
SKA3-201ENST00000298260 NDUFS7O75251 213 aa10.71□□□□□ -0.69
SKA3-201ENST00000298260 POU2AF1Q16633 256 aa10.71□□□□□ -0.69
SKA3-201ENST00000298260 C8orf49Q96NF6 230 aa10.71□□□□□ -0.69
SKA3-201ENST00000298260 CHAC1Q9BUX1 264 aa10.71□□□□□ -0.69
SKA3-201ENST00000298260 M0R3E3 92 aa10.71□□□□□ -0.69
SKA3-201ENST00000298260 SLC25A17O43808 307 aa10.71□□□□□ -0.69
SKA3-201ENST00000298260 CD59P13987 128 aa10.71□□□□□ -0.69
SKA3-201ENST00000298260 LYZP61626 148 aa10.71□□□□□ -0.69
SKA3-201ENST00000298260 LGALS9BQ3B8N2 356 aa10.71□□□□□ -0.69
SKA3-201ENST00000298260 LGALS9CQ6DKI2 356 aa10.71□□□□□ -0.69
SKA3-201ENST00000298260 PHLDA1Q8WV24 401 aaPredicted RBP10.71□□□□□ -0.69
SKA3-201ENST00000298260 SSUH2Q9Y2M2 353 aa10.71□□□□□ -0.69
SKA3-201ENST00000298260 ZGRF1Q86YA3 2104 aa10.71□□□□□ -0.7
SKA3-201ENST00000298260 A0A1W2PNU3 283 aaPredicted RBP10.71□□□□□ -0.7
SKA3-201ENST00000298260 ATP1A1-AS1Q5TC04 95 aa10.71□□□□□ -0.7
SKA3-201ENST00000298260 LYZL1Q6UWQ5 148 aa10.71□□□□□ -0.7
SKA3-201ENST00000298260 TMEM189A5PLL7 270 aa10.7□□□□□ -0.7
SKA3-201ENST00000298260 NDUFS8O00217 210 aa10.7□□□□□ -0.7
SKA3-201ENST00000298260 NPYP01303 97 aa10.7□□□□□ -0.7
SKA3-201ENST00000298260 CCL3L1P16619 93 aa10.7□□□□□ -0.7
SKA3-201ENST00000298260 FCER1GP30273 86 aa10.7□□□□□ -0.7
SKA3-201ENST00000298260 DLX1P56177 255 aa10.7□□□□□ -0.7
SKA3-201ENST00000298260 RIGQ13278 110 aa10.7□□□□□ -0.7
SKA3-201ENST00000298260 SLC25A48Q6ZT89 311 aaKnown RBP10.7□□□□□ -0.7
SKA3-201ENST00000298260 PPP1R35Q8TAP8 253 aa10.7□□□□□ -0.7
SKA3-201ENST00000298260 NCOR2Q9Y618 2525 aa10.7□□□□□ -0.7
SKA3-201ENST00000298260 RAI1Q7Z5J4 1906 aaPredicted RBP10.7□□□□□ -0.7
SKA3-201ENST00000298260 PRRG2O14669 202 aa10.7□□□□□ -0.7
SKA3-201ENST00000298260 TNFRSF1AP19438 455 aa10.7□□□□□ -0.7
SKA3-201ENST00000298260 FAM169BQ8N8A8 192 aa10.7□□□□□ -0.7
SKA3-201ENST00000298260 FAM222BQ8WU58 562 aa10.7□□□□□ -0.7
SKA3-201ENST00000298260 A0A1W2PPI3 338 aa10.69□□□□□ -0.7
SKA3-201ENST00000298260 WI2-2373I1.2A0A1W2PRP0 233 aa10.69□□□□□ -0.7
SKA3-201ENST00000298260 NBASA2RRP1 2371 aa10.69□□□□□ -0.7
SKA3-201ENST00000298260 TRBV25-1A0A075B6N4 114 aa10.69□□□□□ -0.7
SKA3-201ENST00000298260 PRR33A8MZF0 331 aa10.69□□□□□ -0.7
SKA3-201ENST00000298260 NTN3O00634 580 aaPredicted RBP10.69□□□□□ -0.7
SKA3-201ENST00000298260 HBDP02042 147 aa10.69□□□□□ -0.7
SKA3-201ENST00000298260 C6orf15Q6UXA7 325 aaPredicted RBP10.69□□□□□ -0.7
SKA3-201ENST00000298260 COL25A1Q9BXS0 654 aaPredicted RBP10.69□□□□□ -0.7
SKA3-201ENST00000298260 MRPL51Q4U2R6 128 aaKnown RBP10.68□□□□□ -0.7
SKA3-201ENST00000298260 DEFB124Q8NES8 71 aa10.68□□□□□ -0.7
SKA3-201ENST00000298260 GEMIN7Q9H840 131 aaKnown RBP10.68□□□□□ -0.7
SKA3-201ENST00000298260 IGKV3-15P01624 115 aa10.68□□□□□ -0.7
SKA3-201ENST00000298260 EVI2AP22794 236 aa10.68□□□□□ -0.7
SKA3-201ENST00000298260 PLA2G2CQ5R387 149 aa10.68□□□□□ -0.7
SKA3-201ENST00000298260 MAPKAPK5-AS1Q8N8E1 139 aa10.68□□□□□ -0.7
SKA3-201ENST00000298260 MSRB1Q9NZV6 116 aa10.68□□□□□ -0.7
SKA3-201ENST00000298260 TRGV5A0A0B4J1U4 118 aa10.67□□□□□ -0.7
SKA3-201ENST00000298260 IGLL5B9A064 214 aa10.67□□□□□ -0.7
SKA3-201ENST00000298260 ZCCHC24Q8N2G6 241 aaKnown RBP10.67□□□□□ -0.7
SKA3-201ENST00000298260 ZNF479Q96JC4 524 aa10.67□□□□□ -0.7
SKA3-201ENST00000298260 IGHV1-18A0A0C4DH31 117 aa10.67□□□□□ -0.7
SKA3-201ENST00000298260 KIR2DL2P43627 348 aaPredicted RBP10.67□□□□□ -0.7
SKA3-201ENST00000298260 HHLA3Q9XRX5 114 aa10.67□□□□□ -0.7
SKA3-201ENST00000298260 S4R3C0 116 aa10.67□□□□□ -0.7
SKA3-201ENST00000298260 RELNP78509 3460 aa10.67□□□□□ -0.7
SKA3-201ENST00000298260 LINC01548A6NM66 108 aa10.66□□□□□ -0.7
SKA3-201ENST00000298260 SIVA1O15304 175 aa10.66□□□□□ -0.7
SKA3-201ENST00000298260 PRSS1P07477 247 aa10.66□□□□□ -0.7
SKA3-201ENST00000298260 SCGB1A1P11684 91 aa10.66□□□□□ -0.7
SKA3-201ENST00000298260 GATA1P15976 413 aaPredicted RBP10.66□□□□□ -0.7
SKA3-201ENST00000298260 ZNF562Q6V9R5 426 aa10.66□□□□□ -0.7
SKA3-201ENST00000298260 THAP8Q8NA92 274 aa10.66□□□□□ -0.7
SKA3-201ENST00000298260 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.66□□□□□ -0.7
SKA3-201ENST00000298260 GLMPQ8WWB7 406 aa10.66□□□□□ -0.7
SKA3-201ENST00000298260 DPF1Q92782 380 aa10.66□□□□□ -0.7
SKA3-201ENST00000298260 SPATA25Q9BR10 227 aa10.66□□□□□ -0.7
SKA3-201ENST00000298260 WNK2Q9Y3S1 2297 aa10.66□□□□□ -0.7
SKA3-201ENST00000298260 SPTA1P02549 2419 aa10.66□□□□□ -0.7
SKA3-201ENST00000298260 ENSAO43768 121 aaKnown RBP10.66□□□□□ -0.7
SKA3-201ENST00000298260 CNTFRP26992 372 aa10.66□□□□□ -0.7
SKA3-201ENST00000298260 FOXI2Q6ZQN5 318 aa10.66□□□□□ -0.7
SKA3-201ENST00000298260 PLSCR4Q9NRQ2 329 aa10.66□□□□□ -0.7
SKA3-201ENST00000298260 CKS2P33552 79 aa10.66□□□□□ -0.7
SKA3-201ENST00000298260 TCF15Q12870 199 aa10.66□□□□□ -0.7
SKA3-201ENST00000298260 ZC2HC1BQ5TFG8 222 aa10.66□□□□□ -0.7
SKA3-201ENST00000298260 ORMDL3Q8N138 153 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms