RNA–Protein interactions for RNA: ENST00000249499.7

HOXD9-201, Transcript of homeobox D9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD9, Length 1,870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9-201ENST00000249499 PRR27Q6MZM9 219 aa17.79■□□□□ 0.44
HOXD9-201ENST00000249499 CCDC140Q96MF4 163 aa17.79■□□□□ 0.44
HOXD9-201ENST00000249499 H3BUA1 57 aa17.78■□□□□ 0.44
HOXD9-201ENST00000249499 J3QLI3 93 aa17.78■□□□□ 0.44
HOXD9-201ENST00000249499 CLEC3BP05452 202 aa17.78■□□□□ 0.44
HOXD9-201ENST00000249499 BCL6BQ8N143 479 aaPredicted RBP17.78■□□□□ 0.44
HOXD9-201ENST00000249499 RPP21Q9H633 154 aaKnown RBP17.78■□□□□ 0.44
HOXD9-201ENST00000249499 ZFAND3Q9H8U3 227 aa17.78■□□□□ 0.44
HOXD9-201ENST00000249499 UNC79Q9P2D8 2635 aa17.78■□□□□ 0.44
HOXD9-201ENST00000249499 FBN2P35556 2912 aa17.78■□□□□ 0.44
HOXD9-201ENST00000249499 A0A096LNT2 108 aa17.78■□□□□ 0.44
HOXD9-201ENST00000249499 FBLL1A6NHQ2 334 aaKnown RBP17.78■□□□□ 0.44
HOXD9-201ENST00000249499 TOMM20LQ6UXN7 152 aa17.78■□□□□ 0.44
HOXD9-201ENST00000249499 TMEM136Q6ZRR5 245 aa17.78■□□□□ 0.44
HOXD9-201ENST00000249499 OR4B1Q8NGF8 309 aa17.78■□□□□ 0.44
HOXD9-201ENST00000249499 GFRA4Q9GZZ7 299 aa17.78■□□□□ 0.44
HOXD9-201ENST00000249499 SPG11Q96JI7 2443 aa17.77■□□□□ 0.44
HOXD9-201ENST00000249499 FAM231BA6NCW3 169 aa17.77■□□□□ 0.43
HOXD9-201ENST00000249499 SH2D7A6NKC9 451 aaPredicted RBP17.77■□□□□ 0.43
HOXD9-201ENST00000249499 DIRC3C9JPN6 131 aa17.77■□□□□ 0.43
HOXD9-201ENST00000249499 IGHG2P01859 326 aa17.77■□□□□ 0.43
HOXD9-201ENST00000249499 TCL1AP56279 114 aa17.77■□□□□ 0.43
HOXD9-201ENST00000249499 RELQ04864 619 aaPredicted RBP17.77■□□□□ 0.43
HOXD9-201ENST00000249499 ATP5G2Q06055 141 aa17.77■□□□□ 0.43
HOXD9-201ENST00000249499 ATP5L2Q7Z4Y8 100 aa17.77■□□□□ 0.43
HOXD9-201ENST00000249499 NRGNQ92686 78 aa17.77■□□□□ 0.43
HOXD9-201ENST00000249499 SGK494Q96LW2 274 aa17.77■□□□□ 0.43
HOXD9-201ENST00000249499 A8MWL6 223 aa17.76■□□□□ 0.43
HOXD9-201ENST00000249499 NPIPB6E9PJ23 425 aa17.76■□□□□ 0.43
HOXD9-201ENST00000249499 P01737 135 aa17.76■□□□□ 0.43
HOXD9-201ENST00000249499 AMBPP02760 352 aa17.76■□□□□ 0.43
HOXD9-201ENST00000249499 PSG3Q16557 428 aa17.76■□□□□ 0.43
HOXD9-201ENST00000249499 TMEM18Q96B42 140 aa17.76■□□□□ 0.43
HOXD9-201ENST00000249499 DAZAP1Q96EP5 407 aaKnown RBP17.76■□□□□ 0.43
HOXD9-201ENST00000249499 ZNF331Q9NQX6 463 aaPredicted RBP17.76■□□□□ 0.43
HOXD9-201ENST00000249499 H3BUX3 64 aa17.75■□□□□ 0.43
HOXD9-201ENST00000249499 CA1P00915 261 aaPredicted RBP17.75■□□□□ 0.43
HOXD9-201ENST00000249499 CSN1S1P47710 185 aa17.75■□□□□ 0.43
HOXD9-201ENST00000249499 SOX21Q9Y651 276 aaPredicted RBP17.75■□□□□ 0.43
HOXD9-201ENST00000249499 ITPR2Q14571 2701 aa17.75■□□□□ 0.43
HOXD9-201ENST00000249499 NUP35Q8NFH5 326 aa17.75■□□□□ 0.43
HOXD9-201ENST00000249499 A0A087X0K7 114 aa17.74■□□□□ 0.43
HOXD9-201ENST00000249499 Q0VG73 95 aa17.74■□□□□ 0.43
HOXD9-201ENST00000249499 C1orf194Q5T5A4 169 aa17.74■□□□□ 0.43
HOXD9-201ENST00000249499 CLEC19AQ6UXS0 136 aa17.74■□□□□ 0.43
HOXD9-201ENST00000249499 PRNTQ86SH4 94 aa17.74■□□□□ 0.43
HOXD9-201ENST00000249499 GBGT1Q8N5D6 347 aa17.74■□□□□ 0.43
HOXD9-201ENST00000249499 NEU1Q99519 415 aa17.74■□□□□ 0.43
HOXD9-201ENST00000249499 ZNF580Q9UK33 172 aa17.74■□□□□ 0.43
HOXD9-201ENST00000249499 PSG8Q9UQ74 426 aa17.74■□□□□ 0.43
HOXD9-201ENST00000249499 CSMD2Q7Z408 3487 aa17.74■□□□□ 0.43
HOXD9-201ENST00000249499 TRAV8-1A0A0A6YYK1 113 aa17.73■□□□□ 0.43
HOXD9-201ENST00000249499 CRISP2P16562 243 aa17.73■□□□□ 0.43
HOXD9-201ENST00000249499 LOXL1Q08397 574 aaPredicted RBP17.73■□□□□ 0.43
HOXD9-201ENST00000249499 BEX4Q9NWD9 120 aaPredicted RBP17.73■□□□□ 0.43
HOXD9-201ENST00000249499 ABCA12Q86UK0 2595 aa17.73■□□□□ 0.43
HOXD9-201ENST00000249499 C16orf54Q6UWD8 224 aa17.73■□□□□ 0.43
HOXD9-201ENST00000249499 LINC00322Q6ZN03 302 aaPredicted RBP17.73■□□□□ 0.43
HOXD9-201ENST00000249499 MS4A10Q96PG2 267 aa17.73■□□□□ 0.43
HOXD9-201ENST00000249499 GSN-AS1Q9NRJ2 163 aa17.73■□□□□ 0.43
HOXD9-201ENST00000249499 HIGD1CA8MV81 97 aa17.72■□□□□ 0.43
HOXD9-201ENST00000249499 BUB3O43684 328 aa17.72■□□□□ 0.43
HOXD9-201ENST00000249499 AVPP01185 164 aa17.72■□□□□ 0.43
HOXD9-201ENST00000249499 FRMD6-AS1P0C7T7 363 aa17.72■□□□□ 0.43
HOXD9-201ENST00000249499 ESDP10768 282 aa17.72■□□□□ 0.43
HOXD9-201ENST00000249499 MRPL54Q6P161 138 aaKnown RBP17.72■□□□□ 0.43
HOXD9-201ENST00000249499 LRRC75A-AS1Q8N1F1 130 aa17.72■□□□□ 0.43
HOXD9-201ENST00000249499 USMG5Q96IX5 58 aa17.71■□□□□ 0.43
HOXD9-201ENST00000249499 GNB4Q9HAV0 340 aa17.71■□□□□ 0.43
HOXD9-201ENST00000249499 APCP25054 2843 aa17.71■□□□□ 0.43
HOXD9-201ENST00000249499 SPINK4O60575 86 aa17.71■□□□□ 0.43
HOXD9-201ENST00000249499 PPIFP30405 207 aaKnown RBP17.71■□□□□ 0.43
HOXD9-201ENST00000249499 SLC35B1P78383 322 aa17.71■□□□□ 0.43
HOXD9-201ENST00000249499 LY6EQ16553 131 aa17.71■□□□□ 0.43
HOXD9-201ENST00000249499 C9orf152Q5JTZ5 239 aa17.71■□□□□ 0.43
HOXD9-201ENST00000249499 SMAD5-AS1Q9Y6J3 95 aa17.71■□□□□ 0.43
HOXD9-201ENST00000249499 TRGV3P03979 118 aa17.7■□□□□ 0.42
HOXD9-201ENST00000249499 COX8CQ7Z4L0 72 aa17.7■□□□□ 0.42
HOXD9-201ENST00000249499 CIARTQ8N365 385 aaPredicted RBP17.7■□□□□ 0.42
HOXD9-201ENST00000249499 METTL26Q96S19 204 aa17.7■□□□□ 0.42
HOXD9-201ENST00000249499 CLPSL1A2RUU4 121 aa17.69■□□□□ 0.42
HOXD9-201ENST00000249499 M0R3E3 92 aa17.69■□□□□ 0.42
HOXD9-201ENST00000249499 OR10J3Q5JRS4 329 aa17.69■□□□□ 0.42
HOXD9-201ENST00000249499 A0A1B0GXF2 115 aa17.69■□□□□ 0.42
HOXD9-201ENST00000249499 RAB4BP61018 213 aa17.69■□□□□ 0.42
HOXD9-201ENST00000249499 JOSD1Q15040 202 aaPredicted RBP17.69■□□□□ 0.42
HOXD9-201ENST00000249499 U3KQE9 123 aa17.69■□□□□ 0.42
HOXD9-201ENST00000249499 APCSP02743 223 aa17.68■□□□□ 0.42
HOXD9-201ENST00000249499 FOXA3P55318 350 aaPredicted RBP17.68■□□□□ 0.42
HOXD9-201ENST00000249499 OR5R1Q8NH85 324 aa17.68■□□□□ 0.42
HOXD9-201ENST00000249499 SLC50A1Q9BRV3 221 aa17.68■□□□□ 0.42
HOXD9-201ENST00000249499 RBPMS2Q6ZRY4 209 aaKnown RBP17.67■□□□□ 0.42
HOXD9-201ENST00000249499 ZC2HC1AQ96GY0 325 aa17.67■□□□□ 0.42
HOXD9-201ENST00000249499 CSMD1Q96PZ7 3565 aa17.67■□□□□ 0.42
HOXD9-201ENST00000249499 IGHV3-35A0A0C4DH35 117 aa17.67■□□□□ 0.42
HOXD9-201ENST00000249499 GRIFINA4D1Z8 144 aa17.67■□□□□ 0.42
HOXD9-201ENST00000249499 PAFAH1B2P68402 229 aa17.67■□□□□ 0.42
HOXD9-201ENST00000249499 SAPCD1Q5SSQ6 148 aa17.67■□□□□ 0.42
HOXD9-201ENST00000249499 TMEM256Q8N2U0 113 aa17.67■□□□□ 0.42
HOXD9-201ENST00000249499 TP53TG3Q9ULZ0 132 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms