RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 CDIP1Q9H305 208 aa11.78□□□□□ -0.52
PTPRA-201ENST00000216877 TRAV8-2A0A0B4J237 113 aa11.78□□□□□ -0.52
PTPRA-201ENST00000216877 CCDC179H3BU77 68 aa11.78□□□□□ -0.52
PTPRA-201ENST00000216877 SNCGO76070 127 aa11.78□□□□□ -0.52
PTPRA-201ENST00000216877 CT45A10P0DMU9 189 aa11.78□□□□□ -0.52
PTPRA-201ENST00000216877 KLRD1Q13241 179 aa11.78□□□□□ -0.52
PTPRA-201ENST00000216877 ZNF146Q15072 292 aa11.78□□□□□ -0.52
PTPRA-201ENST00000216877 ORMDL3Q8N138 153 aa11.78□□□□□ -0.52
PTPRA-201ENST00000216877 PIP4P2Q8N4L2 257 aa11.78□□□□□ -0.52
PTPRA-201ENST00000216877 ZNF502Q8TBZ5 544 aa11.78□□□□□ -0.52
PTPRA-201ENST00000216877 DLL1O00548 723 aa11.77□□□□□ -0.52
PTPRA-201ENST00000216877 ZNF134P52741 427 aa11.77□□□□□ -0.52
PTPRA-201ENST00000216877 HCP5Q6MZN7 132 aa11.77□□□□□ -0.52
PTPRA-201ENST00000216877 ZNRF1Q8ND25 227 aa11.77□□□□□ -0.52
PTPRA-201ENST00000216877 TRAV40A0A0B4J280 105 aa11.77□□□□□ -0.53
PTPRA-201ENST00000216877 SRSF6Q13247 344 aaKnown RBP11.77□□□□□ -0.53
PTPRA-201ENST00000216877 SCGB1D4Q6XE38 83 aa11.77□□□□□ -0.53
PTPRA-201ENST00000216877 TET2Q6N021 2002 aaPredicted RBP11.77□□□□□ -0.53
PTPRA-201ENST00000216877 IGKCP01834 107 aa11.77□□□□□ -0.53
PTPRA-201ENST00000216877 CD69Q07108 199 aa11.77□□□□□ -0.53
PTPRA-201ENST00000216877 TWIST1Q15672 202 aa11.77□□□□□ -0.53
PTPRA-201ENST00000216877 TBC1D28Q2M2D7 210 aa11.77□□□□□ -0.53
PTPRA-201ENST00000216877 ZNF766Q5HY98 468 aa11.77□□□□□ -0.53
PTPRA-201ENST00000216877 C10orf55Q5SWW7 151 aa11.77□□□□□ -0.53
PTPRA-201ENST00000216877 UTF1Q5T230 341 aa11.77□□□□□ -0.53
PTPRA-201ENST00000216877 PPP1R35Q8TAP8 253 aa11.77□□□□□ -0.53
PTPRA-201ENST00000216877 H7C2G1 150 aa11.76□□□□□ -0.53
PTPRA-201ENST00000216877 HOXA3O43365 443 aaPredicted RBP11.76□□□□□ -0.53
PTPRA-201ENST00000216877 RRN3P1Q2M238 152 aa11.76□□□□□ -0.53
PTPRA-201ENST00000216877 KRTAP27-1Q3LI81 207 aa11.76□□□□□ -0.53
PTPRA-201ENST00000216877 GGNQ86UU5 652 aa11.76□□□□□ -0.53
PTPRA-201ENST00000216877 RPEQ96AT9 228 aa11.76□□□□□ -0.53
PTPRA-201ENST00000216877 ZNRD1Q9P1U0 126 aa11.76□□□□□ -0.53
PTPRA-201ENST00000216877 MAGEA5P43359 124 aa11.76□□□□□ -0.53
PTPRA-201ENST00000216877 LYZP61626 148 aa11.76□□□□□ -0.53
PTPRA-201ENST00000216877 FXYD5Q96DB9 178 aa11.76□□□□□ -0.53
PTPRA-201ENST00000216877 DEFB127Q9H1M4 99 aa11.76□□□□□ -0.53
PTPRA-201ENST00000216877 TCRAP04437 139 aa11.76□□□□□ -0.53
PTPRA-201ENST00000216877 C6orf15Q6UXA7 325 aaPredicted RBP11.76□□□□□ -0.53
PTPRA-201ENST00000216877 KLK15Q9H2R5 256 aa11.76□□□□□ -0.53
PTPRA-201ENST00000216877 ABCA4P78363 2273 aa11.76□□□□□ -0.53
PTPRA-201ENST00000216877 EIF4EBP1Q13541 118 aaPredicted RBP11.75□□□□□ -0.53
PTPRA-201ENST00000216877 LINC00312Q9Y6C7 94 aa11.75□□□□□ -0.53
PTPRA-201ENST00000216877 TRGV8A0A0C4DH27 118 aa11.75□□□□□ -0.53
PTPRA-201ENST00000216877 TMEM8BA6NDV4 472 aa11.75□□□□□ -0.53
PTPRA-201ENST00000216877 CYB561P49447 251 aa11.75□□□□□ -0.53
PTPRA-201ENST00000216877 KLF17Q5JT82 389 aaPredicted RBP11.75□□□□□ -0.53
PTPRA-201ENST00000216877 ZNF562Q6V9R5 426 aa11.75□□□□□ -0.53
PTPRA-201ENST00000216877 NFE4Q86UQ8 179 aa11.75□□□□□ -0.53
PTPRA-201ENST00000216877 CNEP1R1Q8N9A8 125 aa11.75□□□□□ -0.53
PTPRA-201ENST00000216877 TM2D2Q9BX73 214 aa11.75□□□□□ -0.53
PTPRA-201ENST00000216877 PRO3102Q9H379 93 aa11.75□□□□□ -0.53
PTPRA-201ENST00000216877 LINC01549A6NIU2 74 aa11.75□□□□□ -0.53
PTPRA-201ENST00000216877 C16orf97H3BN30 126 aa11.75□□□□□ -0.53
PTPRA-201ENST00000216877 PATE2Q6UY27 113 aa11.75□□□□□ -0.53
PTPRA-201ENST00000216877 DLX4Q92988 240 aaPredicted RBP11.75□□□□□ -0.53
PTPRA-201ENST00000216877 HARBI1Q96MB7 349 aa11.75□□□□□ -0.53
PTPRA-201ENST00000216877 HAX1O00165 279 aa11.74□□□□□ -0.53
PTPRA-201ENST00000216877 IGKV1-16P04430 117 aa11.74□□□□□ -0.53
PTPRA-201ENST00000216877 PRDX2P32119 198 aa11.74□□□□□ -0.53
PTPRA-201ENST00000216877 SLC25A48Q6ZT89 311 aaKnown RBP11.74□□□□□ -0.53
PTPRA-201ENST00000216877 SPINK14Q6IE38 97 aa11.74□□□□□ -0.53
PTPRA-201ENST00000216877 FMC1Q96HJ9 113 aa11.74□□□□□ -0.53
PTPRA-201ENST00000216877 A0A096LNJ9 63 aa11.74□□□□□ -0.53
PTPRA-201ENST00000216877 SAA2P0DJI9 122 aaPredicted RBP11.74□□□□□ -0.53
PTPRA-201ENST00000216877 LYZL1Q6UWQ5 148 aa11.74□□□□□ -0.53
PTPRA-201ENST00000216877 OR10X1Q8NGY0 326 aa11.74□□□□□ -0.53
PTPRA-201ENST00000216877 SAP25Q8TEE9 199 aa11.74□□□□□ -0.53
PTPRA-201ENST00000216877 DPF1Q92782 380 aa11.74□□□□□ -0.53
PTPRA-201ENST00000216877 NCBP2LA6PVI3 153 aaKnown RBP11.73□□□□□ -0.53
PTPRA-201ENST00000216877 NPYP01303 97 aa11.73□□□□□ -0.53
PTPRA-201ENST00000216877 Q6AWC8 147 aa11.73□□□□□ -0.53
PTPRA-201ENST00000216877 ZFP2Q6ZN57 461 aa11.73□□□□□ -0.53
PTPRA-201ENST00000216877 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.73□□□□□ -0.53
PTPRA-201ENST00000216877 CEP295Q9C0D2 2601 aa11.73□□□□□ -0.53
PTPRA-201ENST00000216877 LINC01548A6NM66 108 aa11.73□□□□□ -0.53
PTPRA-201ENST00000216877 MAPKAPK5-AS1Q8N8E1 139 aa11.73□□□□□ -0.53
PTPRA-201ENST00000216877 CACNA1BQ00975 2339 aa11.73□□□□□ -0.53
PTPRA-201ENST00000216877 K7ESF4 209 aa11.72□□□□□ -0.53
PTPRA-201ENST00000216877 DPM2O94777 84 aa11.72□□□□□ -0.53
PTPRA-201ENST00000216877 TMEM14BQ9NUH8 114 aa11.72□□□□□ -0.53
PTPRA-201ENST00000216877 FOXA2Q9Y261 457 aaPredicted RBP11.72□□□□□ -0.53
PTPRA-201ENST00000216877 RNASE2P10153 161 aaKnown RBP11.72□□□□□ -0.53
PTPRA-201ENST00000216877 MPV17P39210 176 aa11.72□□□□□ -0.53
PTPRA-201ENST00000216877 FHL3Q13643 280 aa11.72□□□□□ -0.53
PTPRA-201ENST00000216877 FAM201AQ5SY85 155 aa11.72□□□□□ -0.53
PTPRA-201ENST00000216877 C1orf229Q6ZS94 237 aaPredicted RBP11.72□□□□□ -0.53
PTPRA-201ENST00000216877 PPDPFLQ8WWR9 84 aa11.72□□□□□ -0.53
PTPRA-201ENST00000216877 YAE1D1Q9NRH1 226 aa11.72□□□□□ -0.53
PTPRA-201ENST00000216877 LYZL6O75951 148 aa11.71□□□□□ -0.53
PTPRA-201ENST00000216877 PRCDQ00LT1 54 aa11.71□□□□□ -0.53
PTPRA-201ENST00000216877 PCOLCEQ15113 449 aa11.71□□□□□ -0.53
PTPRA-201ENST00000216877 PHLDA1Q8WV24 401 aaPredicted RBP11.71□□□□□ -0.53
PTPRA-201ENST00000216877 PRSS22Q9GZN4 317 aa11.71□□□□□ -0.53
PTPRA-201ENST00000216877 C7orf69Q9H7B7 122 aa11.71□□□□□ -0.53
PTPRA-201ENST00000216877 TECTAO75443 2155 aa11.71□□□□□ -0.53
PTPRA-201ENST00000216877 FAM159AQ6UWV7 190 aa11.71□□□□□ -0.53
PTPRA-201ENST00000216877 RNF138Q8WVD3 245 aa11.71□□□□□ -0.53
PTPRA-201ENST00000216877 NCKAP5O14513 1909 aa11.71□□□□□ -0.53
PTPRA-201ENST00000216877 A8MWV9 139 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms