RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 ZNF414Q96IQ9 312 aa17.18■□□□□ 0.34
PNKP-220ENST00000627232 BMPR1BO00238 502 aa17.17■□□□□ 0.34
PNKP-220ENST00000627232 AVPP01185 164 aa17.17■□□□□ 0.34
PNKP-220ENST00000627232 LTAP01374 205 aa17.17■□□□□ 0.34
PNKP-220ENST00000627232 IGF1P05019 195 aa17.17■□□□□ 0.34
PNKP-220ENST00000627232 SIGLEC15Q6ZMC9 328 aa17.17■□□□□ 0.34
PNKP-220ENST00000627232 NHLRC2Q8NBF2 726 aa17.17■□□□□ 0.34
PNKP-220ENST00000627232 MLST8Q9BVC4 326 aa17.17■□□□□ 0.34
PNKP-220ENST00000627232 RPH3ALQ9UNE2 315 aa17.17■□□□□ 0.34
PNKP-220ENST00000627232 TRAPPC1Q9Y5R8 145 aa17.17■□□□□ 0.34
PNKP-220ENST00000627232 SMIM27A0A1W2PRY6 76 aa17.16■□□□□ 0.34
PNKP-220ENST00000627232 FAM223BA6NKX1 122 aa17.16■□□□□ 0.34
PNKP-220ENST00000627232 BRI3O95415 125 aa17.16■□□□□ 0.34
PNKP-220ENST00000627232 RPL7P18124 248 aaKnown RBP17.16■□□□□ 0.34
PNKP-220ENST00000627232 GPR183P32249 361 aa17.16■□□□□ 0.34
PNKP-220ENST00000627232 FAM223AQ8IWN6 122 aa17.16■□□□□ 0.34
PNKP-220ENST00000627232 BCL6BQ8N143 479 aaPredicted RBP17.16■□□□□ 0.34
PNKP-220ENST00000627232 ZNF705GA8MUZ8 300 aaPredicted RBP17.16■□□□□ 0.34
PNKP-220ENST00000627232 GATCO43716 136 aaKnown RBP17.16■□□□□ 0.34
PNKP-220ENST00000627232 IGHG2P01859 326 aa17.16■□□□□ 0.34
PNKP-220ENST00000627232 MEOX2P50222 304 aa17.16■□□□□ 0.34
PNKP-220ENST00000627232 ATP5G2Q06055 141 aa17.16■□□□□ 0.34
PNKP-220ENST00000627232 COX19Q49B96 90 aa17.16■□□□□ 0.34
PNKP-220ENST00000627232 COA6Q5JTJ3 125 aaKnown RBP17.16■□□□□ 0.34
PNKP-220ENST00000627232 EXOC3-AS1Q8N2X6 119 aa17.16■□□□□ 0.34
PNKP-220ENST00000627232 MBD6Q96DN6 1003 aa17.16■□□□□ 0.34
PNKP-220ENST00000627232 CCDC140Q96MF4 163 aa17.16■□□□□ 0.34
PNKP-220ENST00000627232 SOX21Q9Y651 276 aaPredicted RBP17.16■□□□□ 0.34
PNKP-220ENST00000627232 ZNF462Q96JM2 2506 aa17.15■□□□□ 0.34
PNKP-220ENST00000627232 CLEC3BP05452 202 aa17.15■□□□□ 0.34
PNKP-220ENST00000627232 RAB9AP51151 201 aa17.15■□□□□ 0.34
PNKP-220ENST00000627232 LY6EQ16553 131 aa17.15■□□□□ 0.34
PNKP-220ENST00000627232 OR8I2Q8N0Y5 310 aa17.15■□□□□ 0.34
PNKP-220ENST00000627232 GRAMD2BQ96HH9 432 aa17.15■□□□□ 0.34
PNKP-220ENST00000627232 C17orf77Q96MU5 243 aa17.15■□□□□ 0.34
PNKP-220ENST00000627232 SERTAD4Q9NUC0 356 aa17.15■□□□□ 0.34
PNKP-220ENST00000627232 ZNF492Q9P255 531 aa17.15■□□□□ 0.34
PNKP-220ENST00000627232 FLNCQ14315 2725 aa17.15■□□□□ 0.34
PNKP-220ENST00000627232 H3BUA1 57 aa17.14■□□□□ 0.33
PNKP-220ENST00000627232 SMIM6P0DI80 62 aa17.14■□□□□ 0.33
PNKP-220ENST00000627232 C9orf152Q5JTZ5 239 aa17.14■□□□□ 0.33
PNKP-220ENST00000627232 HIST3H2BBQ8N257 126 aa17.14■□□□□ 0.33
PNKP-220ENST00000627232 ARL6IP6Q8N6S5 226 aa17.14■□□□□ 0.33
PNKP-220ENST00000627232 NUDT10Q8NFP7 164 aa17.14■□□□□ 0.33
PNKP-220ENST00000627232 NUDT11Q96G61 164 aa17.14■□□□□ 0.33
PNKP-220ENST00000627232 ZFAND3Q9H8U3 227 aa17.14■□□□□ 0.33
PNKP-220ENST00000627232 PSG9Q00887 426 aa17.13■□□□□ 0.33
PNKP-220ENST00000627232 DEFB113Q30KQ7 82 aa17.13■□□□□ 0.33
PNKP-220ENST00000627232 TOMM20LQ6UXN7 152 aa17.13■□□□□ 0.33
PNKP-220ENST00000627232 CLEC19AQ6UXS0 136 aa17.13■□□□□ 0.33
PNKP-220ENST00000627232 Q86TA4 180 aa17.13■□□□□ 0.33
PNKP-220ENST00000627232 TMEM75Q8N9X5 138 aa17.13■□□□□ 0.33
PNKP-220ENST00000627232 MS4A10Q96PG2 267 aa17.13■□□□□ 0.33
PNKP-220ENST00000627232 C12orf57Q99622 126 aa17.13■□□□□ 0.33
PNKP-220ENST00000627232 K7EQM0 130 aa17.12■□□□□ 0.33
PNKP-220ENST00000627232 AAMDCQ9H7C9 122 aa17.12■□□□□ 0.33
PNKP-220ENST00000627232 IFITM10A6NMD0 228 aa17.11■□□□□ 0.33
PNKP-220ENST00000627232 ZNF253O75346 499 aa17.11■□□□□ 0.33
PNKP-220ENST00000627232 IGLV2-11P01706 119 aa17.11■□□□□ 0.33
PNKP-220ENST00000627232 KRTAP10-9P60411 292 aa17.11■□□□□ 0.33
PNKP-220ENST00000627232 RELQ04864 619 aaPredicted RBP17.11■□□□□ 0.33
PNKP-220ENST00000627232 GOLT1AQ6ZVE7 132 aa17.11■□□□□ 0.33
PNKP-220ENST00000627232 TMEM183AQ8IXX5 376 aa17.11■□□□□ 0.33
PNKP-220ENST00000627232 SERTM2A0A1B0GWG4 89 aa17.11■□□□□ 0.33
PNKP-220ENST00000627232 IZUMO1RA6ND01 250 aa17.11■□□□□ 0.33
PNKP-220ENST00000627232 SGK494Q96LW2 274 aa17.11■□□□□ 0.33
PNKP-220ENST00000627232 GNB1LQ9BYB4 327 aa17.11■□□□□ 0.33
PNKP-220ENST00000627232 ZNF580Q9UK33 172 aa17.11■□□□□ 0.33
PNKP-220ENST00000627232 UBR5O95071 2799 aaPredicted RBP17.11■□□□□ 0.33
PNKP-220ENST00000627232 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP17.1■□□□□ 0.337e-7■■■■□ 24.2
PNKP-220ENST00000627232 XKRY2A2RUG3 117 aa17.1■□□□□ 0.33
PNKP-220ENST00000627232 TGFAP01135 160 aa17.1■□□□□ 0.33
PNKP-220ENST00000627232 TRGV3P03979 118 aa17.1■□□□□ 0.33
PNKP-220ENST00000627232 COL8A1P27658 744 aa17.1■□□□□ 0.33
PNKP-220ENST00000627232 S100A2P29034 98 aa17.1■□□□□ 0.33
PNKP-220ENST00000627232 GFI1BQ5VTD9 330 aa17.1■□□□□ 0.33
PNKP-220ENST00000627232 PRR27Q6MZM9 219 aa17.1■□□□□ 0.33
PNKP-220ENST00000627232 WDR73Q6P4I2 378 aa17.1■□□□□ 0.33
PNKP-220ENST00000627232 GNB4Q9HAV0 340 aa17.1■□□□□ 0.33
PNKP-220ENST00000627232 MYO18BQ8IUG5 2567 aa17.09■□□□□ 0.33
PNKP-220ENST00000627232 DIRC3C9JPN6 131 aa17.09■□□□□ 0.33
PNKP-220ENST00000627232 MT-ND6P03923 174 aa17.09■□□□□ 0.33
PNKP-220ENST00000627232 PPIFP30405 207 aaKnown RBP17.09■□□□□ 0.33
PNKP-220ENST00000627232 CT83Q5H943 113 aa17.09■□□□□ 0.33
PNKP-220ENST00000627232 GPR61Q9BZJ8 451 aa17.09■□□□□ 0.33
PNKP-220ENST00000627232 PRSS22Q9GZN4 317 aa17.09■□□□□ 0.33
PNKP-220ENST00000627232 ZFP30Q9Y2G7 519 aa17.09■□□□□ 0.33
PNKP-220ENST00000627232 C19orf71A6NCJ1 209 aa17.08■□□□□ 0.32
PNKP-220ENST00000627232 RNF223E7ERA6 249 aa17.08■□□□□ 0.32
PNKP-220ENST00000627232 CBLN1P23435 193 aa17.08■□□□□ 0.32
PNKP-220ENST00000627232 IER3P46695 156 aa17.08■□□□□ 0.32
PNKP-220ENST00000627232 RASL11AQ6T310 242 aa17.08■□□□□ 0.32
PNKP-220ENST00000627232 TSKUQ8WUA8 353 aa17.08■□□□□ 0.32
PNKP-220ENST00000627232 USMG5Q96IX5 58 aa17.08■□□□□ 0.32
PNKP-220ENST00000627232 LINC00527Q9UJ94 153 aa17.08■□□□□ 0.32
PNKP-220ENST00000627232 ZFYVE26Q68DK2 2539 aa17.07■□□□□ 0.32
PNKP-220ENST00000627232 A0A087X0K7 114 aa17.07■□□□□ 0.32
PNKP-220ENST00000627232 IGHV4-31P0DP07 118 aa17.07■□□□□ 0.32
PNKP-220ENST00000627232 CSN1S1P47710 185 aa17.07■□□□□ 0.32
PNKP-220ENST00000627232 PSG3Q16557 428 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms