RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 HOXD3P31249 432 aaPredicted RBP16.62■□□□□ 0.25
UPF1-207ENST00000599848 RNASE7Q9H1E1 156 aaKnown RBP16.62■□□□□ 0.25
UPF1-207ENST00000599848 C1orf122Q6ZSJ8 110 aa16.61■□□□□ 0.25
UPF1-207ENST00000599848 Q6P435 159 aa16.61■□□□□ 0.25
UPF1-207ENST00000599848 SHANK2-AS3Q9BTD1 123 aa16.61■□□□□ 0.25
UPF1-207ENST00000599848 ERG28Q9UKR5 140 aa16.61■□□□□ 0.25
UPF1-207ENST00000599848 LHBP01229 141 aa16.61■□□□□ 0.25
UPF1-207ENST00000599848 GFI1BQ5VTD9 330 aa16.61■□□□□ 0.25
UPF1-207ENST00000599848 ATOH7Q8N100 152 aa16.61■□□□□ 0.25
UPF1-207ENST00000599848 ATP6V0E1O15342 81 aa16.6■□□□□ 0.25
UPF1-207ENST00000599848 SPXQ9BT56 116 aa16.6■□□□□ 0.25
UPF1-207ENST00000599848 RIPPLY3P57055 190 aa16.6■□□□□ 0.25
UPF1-207ENST00000599848 VWC2Q2TAL6 325 aa16.6■□□□□ 0.25
UPF1-207ENST00000599848 LINC00311Q8N616 119 aa16.6■□□□□ 0.25
UPF1-207ENST00000599848 GATD1Q8NB37 220 aa16.6■□□□□ 0.25
UPF1-207ENST00000599848 PSME4Q14997 1843 aa16.6■□□□□ 0.25
UPF1-207ENST00000599848 SRSF2Q01130 221 aaKnown RBP16.6■□□□□ 0.25
UPF1-207ENST00000599848 FXYD7P58549 80 aa16.6■□□□□ 0.25
UPF1-207ENST00000599848 CKAP5Q14008 2032 aa16.6■□□□□ 0.25
UPF1-207ENST00000599848 TMEM126AQ9H061 195 aa16.59■□□□□ 0.25
UPF1-207ENST00000599848 DDTP30046 118 aa16.59■□□□□ 0.25
UPF1-207ENST00000599848 LSM4Q9Y4Z0 139 aaKnown RBP16.59■□□□□ 0.25
UPF1-207ENST00000599848 IGHV3-73A0A0B4J1V6 119 aa16.59■□□□□ 0.25
UPF1-207ENST00000599848 EVI2AP22794 236 aa16.59■□□□□ 0.25
UPF1-207ENST00000599848 LIME1Q9H400 295 aa16.59■□□□□ 0.25
UPF1-207ENST00000599848 VPREB3Q9UKI3 123 aa16.59■□□□□ 0.25
UPF1-207ENST00000599848 IFITM3Q01628 133 aa16.58■□□□□ 0.25
UPF1-207ENST00000599848 SH2D1AO60880 128 aa16.58■□□□□ 0.24
UPF1-207ENST00000599848 TCTEX1D4Q5JR98 221 aa16.58■□□□□ 0.24
UPF1-207ENST00000599848 ST6GALNAC6Q969X2 333 aa16.58■□□□□ 0.24
UPF1-207ENST00000599848 XCL2Q9UBD3 114 aa16.58■□□□□ 0.24
UPF1-207ENST00000599848 MYOFQ9NZM1 2061 aa16.58■□□□□ 0.24
UPF1-207ENST00000599848 AKAP6Q13023 2319 aa16.58■□□□□ 0.24
UPF1-207ENST00000599848 SNRNP200O75643 2136 aaKnown RBP16.57■□□□□ 0.24
UPF1-207ENST00000599848 TET1Q8NFU7 2136 aa16.57■□□□□ 0.24
UPF1-207ENST00000599848 CLPSP04118 112 aa16.57■□□□□ 0.24
UPF1-207ENST00000599848 CD300EQ496F6 205 aaPredicted RBP16.57■□□□□ 0.24
UPF1-207ENST00000599848 KLF17Q5JT82 389 aaPredicted RBP16.57■□□□□ 0.24
UPF1-207ENST00000599848 COL4A1P02462 1669 aa16.57■□□□□ 0.24
UPF1-207ENST00000599848 TMEM95Q3KNT9 176 aa16.57■□□□□ 0.24
UPF1-207ENST00000599848 SPCS1Q9Y6A9 102 aa16.57■□□□□ 0.24
UPF1-207ENST00000599848 SH2D6Q7Z4S9 175 aa16.56■□□□□ 0.24
UPF1-207ENST00000599848 TMEM170AQ8WVE7 144 aa16.56■□□□□ 0.24
UPF1-207ENST00000599848 TMEM249Q2WGJ8 235 aa16.56■□□□□ 0.24
UPF1-207ENST00000599848 TMEM14EPQ6UXP3 125 aa16.56■□□□□ 0.24
UPF1-207ENST00000599848 VWC2LB2RUY7 222 aa16.56■□□□□ 0.24
UPF1-207ENST00000599848 CSTL1Q9H114 145 aa16.56■□□□□ 0.24
UPF1-207ENST00000599848 TRAV1-1A0A0B4J248 108 aa16.55■□□□□ 0.24
UPF1-207ENST00000599848 LY6HO94772 140 aa16.55■□□□□ 0.24
UPF1-207ENST00000599848 DMRTC2Q8IXT2 367 aaPredicted RBP16.55■□□□□ 0.24
UPF1-207ENST00000599848 AZU1P20160 251 aa16.55■□□□□ 0.24
UPF1-207ENST00000599848 PRIMA1Q86XR5 153 aa16.55■□□□□ 0.24
UPF1-207ENST00000599848 EXOC3-AS1Q8N2X6 119 aa16.55■□□□□ 0.24
UPF1-207ENST00000599848 LYZL1Q6UWQ5 148 aa16.55■□□□□ 0.24
UPF1-207ENST00000599848 PNRC2Q9NPJ4 139 aaKnown RBP16.55■□□□□ 0.24
UPF1-207ENST00000599848 NHP2Q9NX24 153 aaKnown RBP16.55■□□□□ 0.24
UPF1-207ENST00000599848 TRAV5A0A0B4J249 113 aa16.55■□□□□ 0.24
UPF1-207ENST00000599848 RNASE2P10153 161 aaKnown RBP16.55■□□□□ 0.24
UPF1-207ENST00000599848 IGHV1OR15-1A0A075B7D0 117 aa16.54■□□□□ 0.24
UPF1-207ENST00000599848 TEX36Q5VZQ5 186 aa16.54■□□□□ 0.24
UPF1-207ENST00000599848 OCC1Q8TAD7 63 aa16.54■□□□□ 0.24
UPF1-207ENST00000599848 RALGAPA1Q6GYQ0 2036 aa16.54■□□□□ 0.24
UPF1-207ENST00000599848 TMEM256Q8N2U0 113 aa16.54■□□□□ 0.24
UPF1-207ENST00000599848 TMEM243Q9BU79 118 aa16.54■□□□□ 0.24
UPF1-207ENST00000599848 LHFPL1Q86WI0 220 aa16.54■□□□□ 0.24
UPF1-207ENST00000599848 TRAV13-1A0A0B4J241 112 aa16.54■□□□□ 0.24
UPF1-207ENST00000599848 DMRT1Q9Y5R6 373 aa16.54■□□□□ 0.24
UPF1-207ENST00000599848 SBF2Q86WG5 1849 aa16.54■□□□□ 0.24
UPF1-207ENST00000599848 DOCK6Q96HP0 2047 aa16.54■□□□□ 0.24
UPF1-207ENST00000599848 IGHV4-39P01824 125 aa16.53■□□□□ 0.24
UPF1-207ENST00000599848 SHISA3A0PJX4 238 aa16.53■□□□□ 0.24
UPF1-207ENST00000599848 RNF222A6NCQ9 220 aa16.53■□□□□ 0.24
UPF1-207ENST00000599848 C22orf46C9J442 243 aa16.53■□□□□ 0.24
UPF1-207ENST00000599848 MESP1Q9BRJ9 268 aa16.53■□□□□ 0.24
UPF1-207ENST00000599848 TIMM21Q9BVV7 248 aa16.53■□□□□ 0.24
UPF1-207ENST00000599848 IGKV1-27A0A075B6S5 117 aa16.53■□□□□ 0.24
UPF1-207ENST00000599848 NEGR1Q7Z3B1 354 aa16.53■□□□□ 0.24
UPF1-207ENST00000599848 THAP8Q8NA92 274 aa16.53■□□□□ 0.24
UPF1-207ENST00000599848 MAPK1IP1LQ8NDC0 245 aa16.52■□□□□ 0.24
UPF1-207ENST00000599848 TRAV8-2A0A0B4J237 113 aa16.52■□□□□ 0.24
UPF1-207ENST00000599848 J3QRE1 110 aa16.52■□□□□ 0.24
UPF1-207ENST00000599848 ATP6V0BQ99437 205 aa16.52■□□□□ 0.24
UPF1-207ENST00000599848 KLK5Q9Y337 293 aaPredicted RBP16.52■□□□□ 0.24
UPF1-207ENST00000599848 A0A0A6YYD4 124 aa16.52■□□□□ 0.23
UPF1-207ENST00000599848 PFN1P07737 140 aaKnown RBP16.52■□□□□ 0.23
UPF1-207ENST00000599848 CDKN1BP46527 198 aa16.52■□□□□ 0.23
UPF1-207ENST00000599848 CD300CQ08708 224 aa16.52■□□□□ 0.23
UPF1-207ENST00000599848 SSBP4Q9BWG4 385 aaPredicted RBP16.52■□□□□ 0.23
UPF1-207ENST00000599848 KAAG1Q9UBP8 84 aa16.52■□□□□ 0.23
UPF1-207ENST00000599848 A0A0U1RRA0 63 aa16.51■□□□□ 0.23
UPF1-207ENST00000599848 Q71RC1 249 aaPredicted RBP16.51■□□□□ 0.23
UPF1-207ENST00000599848 MGST2Q99735 147 aa16.51■□□□□ 0.23
UPF1-207ENST00000599848 C14orf178Q8N769 122 aaPredicted RBP16.51■□□□□ 0.23
UPF1-207ENST00000599848 DICER1Q9UPY3 1922 aaKnown RBP16.51■□□□□ 0.23
UPF1-207ENST00000599848 H3BMM0 161 aa16.51■□□□□ 0.23
UPF1-207ENST00000599848 HSD52Q0P140 79 aa16.51■□□□□ 0.23
UPF1-207ENST00000599848 GFRA4Q9GZZ7 299 aa16.51■□□□□ 0.23
UPF1-207ENST00000599848 RPRMLQ8N4K4 120 aa16.51■□□□□ 0.23
UPF1-207ENST00000599848 SNHG12Q9BXW3 62 aa16.51■□□□□ 0.23
UPF1-207ENST00000599848 GAGE12JA6NER3 117 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms