RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 CCL26Q9Y258 94 aa3.28□□□□□ -1.88
SMAD4-216ENST00000593223 PKDREJQ9NTG1 2253 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 UBR4Q5T4S7 5183 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 PRKDCP78527 4128 aaKnown RBP3.27□□□□□ -1.89
SMAD4-216ENST00000593223 IGKV1-27A0A075B6S5 117 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 A0A1B0GW64 132 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 DHRS12A0PJE2 317 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 MEIS3P1A6NDR6 274 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 DNASE2O00115 360 aaPredicted RBP3.27□□□□□ -1.89
SMAD4-216ENST00000593223 NCR2O95944 276 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 BGLAPP02818 100 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 P0DMU3 169 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 FAM231AP0DMU4 169 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 FAM231CP0DMU5 169 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 COX7A1P24310 79 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 OPRM1P35372 400 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 GNG4P50150 75 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 ARPP19P56211 112 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 DEFA1P59665 94 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 HOXC5Q00444 222 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 EIF3IQ13347 325 aaKnown RBP3.27□□□□□ -1.89
SMAD4-216ENST00000593223 ZNF181Q2M3W8 571 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 HSD17B12Q53GQ0 312 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 LYRM7Q5U5X0 104 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 GLT8D1Q68CQ7 371 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 ZNF773Q6PK81 442 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 H1FOOQ8IZA3 346 aaPredicted RBP3.27□□□□□ -1.89
SMAD4-216ENST00000593223 TMEM61Q8N0U2 210 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 ZNF664Q8N3J9 261 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 SLC22A24Q8N4F4 322 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 DRAM1Q8N682 238 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 OR10D4PQ8NGN7 298 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 OR5H6Q8NGV6 325 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 ABHD14BQ96IU4 210 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 DERL3Q96Q80 235 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 THTPAQ9BU02 230 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 MED28Q9H204 178 aa3.27□□□□□ -1.89
SMAD4-216ENST00000593223 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.27□□□□□ -1.892e-7■■□□□ 13.6
SMAD4-216ENST00000593223 PLIN4Q96Q06 1357 aa3.26□□□□□ -1.89
SMAD4-216ENST00000593223 DOCK9Q9BZ29 2069 aa3.26□□□□□ -1.89
SMAD4-216ENST00000593223 TRDV1A0A1B0GX56 115 aa3.26□□□□□ -1.89
SMAD4-216ENST00000593223 ZNF705GA8MUZ8 300 aaPredicted RBP3.26□□□□□ -1.89
SMAD4-216ENST00000593223 C9JQL5 133 aa3.26□□□□□ -1.89
SMAD4-216ENST00000593223 CHTF8P0CG12 524 aa3.26□□□□□ -1.89
SMAD4-216ENST00000593223 IL3RAP26951 378 aa3.26□□□□□ -1.89
SMAD4-216ENST00000593223 POLR2IP36954 125 aaKnown RBP3.26□□□□□ -1.89
SMAD4-216ENST00000593223 OPRK1P41145 380 aa3.26□□□□□ -1.89
SMAD4-216ENST00000593223 GABARAPL2P60520 117 aa3.26□□□□□ -1.89
SMAD4-216ENST00000593223 RPS11P62280 158 aaKnown RBP eCLIP3.26□□□□□ -1.89
SMAD4-216ENST00000593223 CRADDP78560 199 aa3.26□□□□□ -1.89
SMAD4-216ENST00000593223 CDK6Q00534 326 aa3.26□□□□□ -1.89
SMAD4-216ENST00000593223 EGFEM1PQ0D2K5 195 aa3.26□□□□□ -1.89
SMAD4-216ENST00000593223 IL17AQ16552 155 aa3.26□□□□□ -1.89
SMAD4-216ENST00000593223 ORMDL2Q53FV1 153 aa3.26□□□□□ -1.89
SMAD4-216ENST00000593223 CASC10Q5T4H9 136 aa3.26□□□□□ -1.89
SMAD4-216ENST00000593223 HRCT1Q6UXD1 115 aa3.26□□□□□ -1.89
SMAD4-216ENST00000593223 Q6ZS49 121 aa3.26□□□□□ -1.89
SMAD4-216ENST00000593223 PRNTQ86SH4 94 aa3.26□□□□□ -1.89
SMAD4-216ENST00000593223 LRP11Q86VZ4 500 aa3.26□□□□□ -1.89
SMAD4-216ENST00000593223 MMGT1Q8N4V1 131 aa3.26□□□□□ -1.89
SMAD4-216ENST00000593223 OR11G2Q8NGC1 345 aa3.26□□□□□ -1.89
SMAD4-216ENST00000593223 OR4C16Q8NGL9 310 aa3.26□□□□□ -1.89
SMAD4-216ENST00000593223 MAGOHBQ96A72 148 aaKnown RBP3.26□□□□□ -1.89
SMAD4-216ENST00000593223 CCL13Q99616 98 aa3.26□□□□□ -1.89
SMAD4-216ENST00000593223 SLC25A21Q9BQT8 299 aaPredicted RBP3.26□□□□□ -1.89
SMAD4-216ENST00000593223 NKX6-2Q9C056 277 aaPredicted RBP3.26□□□□□ -1.89
SMAD4-216ENST00000593223 RNF122Q9H9V4 155 aa3.26□□□□□ -1.89
SMAD4-216ENST00000593223 FBXL12Q9NXK8 326 aa3.26□□□□□ -1.89
SMAD4-216ENST00000593223 SCN3BQ9NY72 215 aa3.26□□□□□ -1.89
SMAD4-216ENST00000593223 NAT8Q9UHE5 227 aa3.26□□□□□ -1.89
SMAD4-216ENST00000593223 SCP2D1Q9UJQ7 156 aa3.26□□□□□ -1.89
SMAD4-216ENST00000593223 CYSLTR1Q9Y271 337 aa3.26□□□□□ -1.89
SMAD4-216ENST00000593223 AMMECR1Q9Y4X0 333 aaPredicted RBP3.26□□□□□ -1.89
SMAD4-216ENST00000593223 F11RQ9Y624 299 aaKnown RBP3.26□□□□□ -1.89
SMAD4-216ENST00000593223 TRAV9-1A0A075B6T8 112 aa3.25□□□□□ -1.89
SMAD4-216ENST00000593223 B4DEV8 164 aa3.25□□□□□ -1.89
SMAD4-216ENST00000593223 CLDN25C9JDP6 229 aa3.25□□□□□ -1.89
SMAD4-216ENST00000593223 M0R381 172 aa3.25□□□□□ -1.89
SMAD4-216ENST00000593223 CCL25O15444 150 aa3.25□□□□□ -1.89
SMAD4-216ENST00000593223 FSTL3O95633 263 aa3.25□□□□□ -1.89
SMAD4-216ENST00000593223 IGLV3-27P01718 113 aa3.25□□□□□ -1.89
SMAD4-216ENST00000593223 COX6B1P14854 86 aa3.25□□□□□ -1.89
SMAD4-216ENST00000593223 NTF3P20783 257 aa3.25□□□□□ -1.89
SMAD4-216ENST00000593223 IMPA1P29218 277 aa3.25□□□□□ -1.89
SMAD4-216ENST00000593223 CA7P43166 264 aa3.25□□□□□ -1.89
SMAD4-216ENST00000593223 SLC38A11Q08AI6 406 aa3.25□□□□□ -1.89
SMAD4-216ENST00000593223 GUCA2BQ16661 112 aa3.25□□□□□ -1.89
SMAD4-216ENST00000593223 RTL8BQ17RB0 113 aa3.25□□□□□ -1.89
SMAD4-216ENST00000593223 AMMECR1LQ6DCA0 310 aa3.25□□□□□ -1.89
SMAD4-216ENST00000593223 RFLNAQ6ZTI6 216 aa3.25□□□□□ -1.89
SMAD4-216ENST00000593223 PRR15Q8IV56 129 aa3.25□□□□□ -1.89
SMAD4-216ENST00000593223 MKXQ8IYA7 352 aa3.25□□□□□ -1.89
SMAD4-216ENST00000593223 YIPF7Q8N8F6 280 aa3.25□□□□□ -1.89
SMAD4-216ENST00000593223 OR4S1Q8NGB4 309 aa3.25□□□□□ -1.89
SMAD4-216ENST00000593223 MRPL30Q8TCC3 161 aaKnown RBP3.25□□□□□ -1.89
SMAD4-216ENST00000593223 RPS4Y2Q8TD47 263 aa3.25□□□□□ -1.89
SMAD4-216ENST00000593223 ZNF799Q96GE5 643 aa3.25□□□□□ -1.89
SMAD4-216ENST00000593223 AP1S3Q96PC3 154 aa3.25□□□□□ -1.89
SMAD4-216ENST00000593223 TRIB3Q96RU7 358 aa3.25□□□□□ -1.89
SMAD4-216ENST00000593223 MGLLQ99685 303 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms