RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 TP73-AS1Q9UF72 201 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 TAC3Q9UHF0 121 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 AK3Q9UIJ7 227 aa2.35□□□□□ -2.03
NUP88-209ENST00000574855 MRPS16Q9Y3D3 137 aaKnown RBP2.35□□□□□ -2.03
NUP88-209ENST00000574855 EML6Q6ZMW3 1958 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 TRAV30A0A087WSZ9 112 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 IGKV1D-43A0A0B4J1Z2 117 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 TMEM212A6NML5 194 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 C9JQL5 133 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 RBFOX2O43251 390 aaKnown RBP eCLIP2.34□□□□□ -2.03
NUP88-209ENST00000574855 LYZL6O75951 148 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 TNFP01375 233 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 IGKV1-39P01597 117 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 TRGC2P03986 189 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 IGKV1D-39P04432 117 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 SEC11BP0C7V7 166 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 PIPP12273 146 aaPredicted RBP2.34□□□□□ -2.03
NUP88-209ENST00000574855 ZNF823P16415 610 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 ZNF83P51522 516 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 SNRPGP62308 76 aaKnown RBP2.34□□□□□ -2.03
NUP88-209ENST00000574855 SP6Q3SY56 376 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 VMA21Q3ZAQ7 101 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 AMMECR1LQ6DCA0 310 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 SLC48A1Q6P1K1 146 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 PDPNQ86YL7 162 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 GPHB5Q86YW7 130 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 Q8N7P7 452 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 SLC25A29Q8N8R3 303 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 ZDHHC22Q8N966 263 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 ZNF709Q8N972 641 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 OR5H2Q8NGV7 314 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 DCANP1Q8TF63 244 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 TOMM6Q96B49 74 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 CMBLQ96DG6 245 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 C2orf50Q96LR7 162 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 AP1S3Q96PC3 154 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 DERL3Q96Q80 235 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 MGLLQ99685 303 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 NAA38Q9BRA0 125 aaKnown RBP2.34□□□□□ -2.03
NUP88-209ENST00000574855 BCL2L10Q9HD36 194 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 LHX9Q9NQ69 397 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 BAIAP2Q9UQB8 552 aa2.34□□□□□ -2.03
NUP88-209ENST00000574855 MICAL3Q7RTP6 2002 aa2.34□□□□□ -2.04
NUP88-209ENST00000574855 TDRD6O60522 2096 aaKnown RBP2.33□□□□□ -2.04
NUP88-209ENST00000574855 DSCAML1Q8TD84 2053 aa2.33□□□□□ -2.04
NUP88-209ENST00000574855 TET1Q8NFU7 2136 aa2.33□□□□□ -2.04
NUP88-209ENST00000574855 TANC1Q9C0D5 1861 aa2.33□□□□□ -2.04
NUP88-209ENST00000574855 LRP4O75096 1905 aa2.33□□□□□ -2.04
NUP88-209ENST00000574855 MYLKQ15746 1914 aa2.33□□□□□ -2.04
NUP88-209ENST00000574855 IGKV1-6A0A0C4DH72 117 aa2.33□□□□□ -2.04
NUP88-209ENST00000574855 TMEM218A2RU14 115 aa2.33□□□□□ -2.04
NUP88-209ENST00000574855 IGLL5B9A064 214 aa2.33□□□□□ -2.04
NUP88-209ENST00000574855 HMGN4O00479 90 aa2.33□□□□□ -2.04
NUP88-209ENST00000574855 NPFFO15130 113 aa2.33□□□□□ -2.04
NUP88-209ENST00000574855 PLA2G10O15496 165 aa2.33□□□□□ -2.04
NUP88-209ENST00000574855 ZNF73O43830 326 aaPredicted RBP2.33□□□□□ -2.04
NUP88-209ENST00000574855 LY6G6DO95868 133 aa2.33□□□□□ -2.04
NUP88-209ENST00000574855 HMGN2P05204 90 aaKnown RBP2.33□□□□□ -2.04
NUP88-209ENST00000574855 IFI6P09912 130 aa2.33□□□□□ -2.04
NUP88-209ENST00000574855 LINC00869P0C866 280 aa2.33□□□□□ -2.04
NUP88-209ENST00000574855 ZNF705DP0CH99 300 aaPredicted RBP2.33□□□□□ -2.04
NUP88-209ENST00000574855 ZNF728P0DKX0 622 aa2.33□□□□□ -2.04
NUP88-209ENST00000574855 NFYBP25208 207 aa2.33□□□□□ -2.04
NUP88-209ENST00000574855 RBMXP38159 391 aaKnown RBP2.33□□□□□ -2.04
NUP88-209ENST00000574855 ZNF80P51504 273 aaPredicted RBP2.33□□□□□ -2.04
NUP88-209ENST00000574855 RBM11P57052 281 aaKnown RBP2.33□□□□□ -2.04
NUP88-209ENST00000574855 LSM3P62310 102 aaKnown RBP2.33□□□□□ -2.04
NUP88-209ENST00000574855 Q1RN00 199 aa2.33□□□□□ -2.04
NUP88-209ENST00000574855 MPV17L2Q567V2 206 aa2.33□□□□□ -2.04
NUP88-209ENST00000574855 C12orf73Q69YU5 71 aa2.33□□□□□ -2.04
NUP88-209ENST00000574855 SLC25A34Q6PIV7 304 aa2.33□□□□□ -2.04
NUP88-209ENST00000574855 LCA10Q71F78 164 aa2.33□□□□□ -2.04
NUP88-209ENST00000574855 H1FOOQ8IZA3 346 aaPredicted RBP2.33□□□□□ -2.04
NUP88-209ENST00000574855 C10orf111Q8N326 155 aa2.33□□□□□ -2.04
NUP88-209ENST00000574855 RPP25LQ8N5L8 163 aaKnown RBP2.33□□□□□ -2.04
NUP88-209ENST00000574855 CD177Q8N6Q3 437 aa2.33□□□□□ -2.04
NUP88-209ENST00000574855 OR5C1Q8NGR4 320 aa2.33□□□□□ -2.04
NUP88-209ENST00000574855 OR5H6Q8NGV6 325 aa2.33□□□□□ -2.04
NUP88-209ENST00000574855 CHAC1Q9BUX1 264 aa2.33□□□□□ -2.04
NUP88-209ENST00000574855 TSSK6Q9BXA6 273 aa2.33□□□□□ -2.04
NUP88-209ENST00000574855 SNHG12Q9BXW3 62 aa2.33□□□□□ -2.04
NUP88-209ENST00000574855 FGF23Q9GZV9 251 aaPredicted RBP2.33□□□□□ -2.04
NUP88-209ENST00000574855 BOKQ9UMX3 212 aaPredicted RBP2.33□□□□□ -2.04
NUP88-209ENST00000574855 KIF25-AS1Q9Y6Z4 181 aa2.33□□□□□ -2.04
NUP88-209ENST00000574855 COL4A6Q14031 1691 aa2.33□□□□□ -2.04
NUP88-209ENST00000574855 ANAPC1Q9H1A4 1944 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 IGHV3-72A0A0B4J1Y9 119 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 IGKV1-12A0A0C4DH73 117 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 TLCD2A6NGC4 264 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 GGT3PA6NGU5 568 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 IFITM5A6NNB3 132 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 GGTLC3B5MD39 225 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 ZNF670-ZNF695F2Z2N8 137 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 TAX1BP3O14907 124 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 UBE2L6O14933 153 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 SERF1AO75920 110 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 IGKV1-5P01602 117 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 IGKV1D-12P01611 117 aa2.32□□□□□ -2.04
NUP88-209ENST00000574855 HIST1H1BP16401 226 aaKnown RBP2.32□□□□□ -2.04
NUP88-209ENST00000574855 GNG4P50150 75 aa2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms